genome.fa.s15.2.7.7.80.10.50.1000.183.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  183  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56099393--56099527	50	2.8	48	78	8	132	22	23	20	32	1.98
56100412--56100546	50	2.8	48	78	8	132	22	23	20	32	1.98
56104652--56104713	31	2.1	30	82	17	76	46	8	16	29	1.75
56104926--56105139	107	2.0	107	94	0	374	22	14	23	39	1.91
56108599--56108895	50	5.8	50	83	3	310	26	21	28	23	1.99
56110479--56110515	19	1.9	19	88	0	56	8	32	0	59	1.27
56113119--56113158	20	2.0	20	90	0	62	20	15	12	52	1.74
56113461--56113588	52	2.5	52	89	3	188	27	30	14	28	1.95
56120057--56120114	28	2.1	28	96	0	107	20	37	20	20	1.94
56122457--56122585	52	2.5	52	86	3	163	27	29	15	27	1.96
56124616--56124713	40	2.5	40	98	0	187	34	15	34	15	1.89
56124616--56124713	20	4.9	20	70	18	87	34	15	34	15	1.89
56127159--56127309	60	2.5	61	76	5	155	25	20	15	37	1.93
56128834--56128989	79	2.0	78	88	1	231	28	23	14	33	1.94
56137117--56137181	20	3.2	20	76	8	69	23	23	18	35	1.96
56148505--56148687	38	4.8	38	89	2	251	35	30	18	15	1.92
56148554--56148625	22	3.5	22	66	24	59	31	33	19	15	1.93
56155043--56155081	19	2.1	19	100	0	78	30	5	0	64	1.15
56155045--56155081	6	6.0	6	93	6	65	32	2	0	64	1.07
56155482--56155506	13	1.9	13	100	0	50	36	24	0	40	1.55
56161551--56161791	29	8.3	29	66	11	93	38	21	15	25	1.92
56161563--56161751	58	3.3	58	82	3	193	37	19	15	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56161589--56161760	58	3.0	58	86	1	229	37	20	15	26	1.92
56165767--56165925	80	2.0	80	98	0	309	37	17	16	27	1.92
56170793--56171040	124	2.0	124	96	0	460	43	18	18	18	1.88
56174147--56174202	25	2.2	25	96	0	103	41	23	5	30	1.76
56182395--56182450	25	2.2	25	96	0	103	41	23	5	30	1.76
56185700--56185727	5	5.6	5	100	0	56	42	0	0	57	0.99
56191891--56191931	20	2.0	20	100	0	82	26	4	14	53	1.61
56199760--56199940	95	1.9	94	81	1	218	28	27	12	31	1.93
56202396--56202919	263	2.0	263	90	1	818	35	20	14	28	1.93
56202789--56203774	493	2.0	493	100	0	1972	29	17	24	28	1.97
56203786--56203812	14	1.9	14	100	0	54	14	25	22	37	1.93
56223170--56223215	21	2.2	21	85	14	60	50	0	10	39	1.38
56231129--56231164	5	7.2	5	100	0	72	38	0	0	61	0.96
56231978--56232014	18	2.2	18	85	9	51	70	2	5	21	1.20
56235351--56235382	16	2.0	16	93	0	55	37	18	9	34	1.83
56241424--56241493	35	2.0	35	100	0	140	20	2	25	51	1.61
56243010--56243196	51	3.7	49	75	7	187	22	15	28	32	1.95
56243207--56243292	45	1.9	45	92	0	145	25	15	24	34	1.94
56248516--56248582	33	2.0	33	100	0	134	38	11	14	34	1.84
56252433--56252474	18	2.3	18	81	18	52	71	4	11	11	1.29
56257562--56257853	29	10.0	29	77	8	245	36	14	28	21	1.92
56257565--56257854	59	5.0	58	76	6	237	36	14	27	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56257538--56257854	88	3.6	88	89	3	428	36	14	27	21	1.92
56267771--56267995	40	5.7	40	86	5	269	25	28	22	24	1.99
56267771--56267995	119	1.9	120	83	6	296	25	28	22	24	1.99
56275760--56275982	79	2.8	78	82	9	265	24	27	22	25	2.00
56275760--56275982	39	5.7	40	86	8	266	24	27	22	25	2.00
56278322--56278472	51	3.0	51	85	2	189	35	24	12	27	1.92
56324788--56324985	50	3.8	50	82	4	189	26	22	28	22	1.99
56326434--56326473	20	2.0	20	90	0	62	27	10	12	50	1.72
56326419--56326485	34	1.9	35	90	3	109	31	8	13	46	1.74
56326413--56326489	14	5.0	15	71	20	52	33	9	14	42	1.77
56332958--56333043	44	2.0	44	92	0	145	25	16	29	29	1.97
56333033--56333177	50	2.9	50	87	0	200	26	22	30	20	1.98
56333032--56333219	50	3.8	50	82	4	177	27	22	28	21	1.99
56333552--56333585	14	2.3	15	90	5	52	11	17	0	70	1.16
56337231--56337370	48	2.9	48	77	3	122	40	21	16	21	1.91
56339524--56339612	28	3.2	28	88	6	128	26	24	25	22	2.00
56343908--56343933	10	2.6	10	100	0	52	19	11	7	61	1.53
56353692--56353730	20	2.0	20	90	10	62	69	2	23	5	1.21
56353692--56353736	20	2.2	20	84	11	56	66	4	22	6	1.33
56355832--56356156	173	1.9	174	88	0	499	28	22	22	26	1.99
56355832--56356158	87	3.8	87	88	2	469	28	22	22	26	1.99
56356270--56356369	44	2.3	45	77	8	107	30	17	22	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56356320--56356498	44	4.1	43	68	11	114	30	17	21	30	1.97
56356273--56356547	129	2.1	129	90	1	426	29	17	21	31	1.96
56356605--56356764	50	3.2	50	75	3	187	32	24	18	24	1.97
56356576--56356818	100	2.4	100	92	0	387	32	25	19	23	1.98
56356624--56356780	50	3.1	50	75	3	190	31	24	18	24	1.97
56356644--56356832	50	3.8	50	75	2	157	34	24	17	22	1.96
56357077--56357109	12	2.8	12	90	0	57	72	0	0	27	0.85
56357550--56357582	18	1.9	17	88	11	50	75	12	0	12	1.04
56366233--56366262	16	1.9	16	93	6	53	50	20	0	30	1.49
56374054--56374098	23	2.0	23	100	0	90	40	17	8	33	1.81
56385994--56386183	95	2.0	95	97	1	364	33	11	12	43	1.78
56405673--56405770	27	3.6	27	80	0	115	40	30	10	18	1.84
56409810--56409919	54	2.0	54	91	3	177	32	6	13	47	1.68
56413347--56413391	19	2.4	18	85	7	63	53	2	0	44	1.13
56415193--56415261	27	2.5	28	83	6	88	23	2	20	53	1.59
56415229--56415305	35	2.2	36	90	4	129	27	2	16	53	1.57
56416620--56416696	14	5.0	15	72	20	61	41	16	9	32	1.80
56416636--56416675	20	2.0	20	90	0	62	50	12	10	27	1.72
56440960--56441022	20	3.3	20	64	28	55	31	19	7	41	1.80
56440959--56441035	37	2.1	37	95	0	136	29	19	9	41	1.82
56441050--56441106	26	2.2	26	100	0	114	35	28	3	33	1.74
56444323--56444448	66	1.9	65	88	1	189	44	23	13	19	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56450075--56450108	14	2.3	15	90	5	52	76	2	5	14	1.09
56453928--56454037	41	2.9	36	73	21	116	19	28	22	30	1.98
56455475--56455625	28	5.2	28	84	5	178	27	22	24	25	2.00
56455727--56455800	26	2.8	27	81	6	89	33	25	25	14	1.94
56456039--56456302	27	10.0	27	79	5	207	20	16	20	43	1.88
56456187--56456270	28	3.0	28	82	1	89	21	13	22	42	1.87
56468439--56468506	29	2.3	29	85	5	93	27	30	13	27	1.94
56468328--56468655	174	1.9	174	97	0	620	30	24	14	30	1.95
56468608--56468686	29	2.7	30	82	13	110	29	30	15	25	1.96
56470782--56470839	30	1.9	30	85	0	80	36	6	25	31	1.83
56471180--56471422	50	4.7	50	86	3	315	26	22	28	21	1.99
56483942--56484227	50	5.6	50	78	3	252	27	20	28	23	1.99
56489171--56489208	19	2.0	19	100	0	76	31	26	10	31	1.90
56495124--56495168	24	1.9	23	86	4	63	17	33	6	42	1.76
56497240--56497277	19	2.0	20	94	5	69	18	34	10	36	1.85
56497242--56497287	20	2.3	19	85	7	56	23	34	10	30	1.89
56499674--56499728	18	3.1	18	78	5	58	76	3	12	7	1.12
56499709--56499771	24	2.5	24	84	7	72	68	3	17	11	1.33
56499710--56499776	12	5.3	12	74	10	53	67	2	17	11	1.35
56499756--56499794	18	2.2	18	90	9	62	64	0	15	20	1.30
56501901--56501938	19	1.9	19	89	5	58	21	31	10	36	1.87
56503048--56503142	45	2.1	45	94	0	163	27	20	21	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56510314--56510352	5	7.6	5	82	5	51	0	38	0	61	0.96
56511046--56511283	27	8.8	27	88	1	309	42	21	19	16	1.89
56511485--56511532	26	1.9	24	86	4	60	14	22	25	37	1.92
56511641--56511723	28	3.0	28	90	0	130	22	24	21	31	1.98
56512476--56512535	20	3.1	20	66	9	52	28	5	21	45	1.73
56514018--56514048	16	1.9	16	100	0	62	29	32	6	32	1.83
56520304--56520526	39	5.7	40	85	8	266	25	22	27	24	2.00
56520304--56520526	79	2.8	81	84	9	282	25	22	27	24	2.00
56520304--56520559	79	3.3	79	81	10	217	26	21	27	24	1.99
56528972--56529159	40	4.7	40	97	0	358	30	20	27	20	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187