genome.fa.s15.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  171  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52100646--52100692	24	1.9	25	83	12	62	38	19	10	31	1.86
52104712--52104782	25	2.7	27	85	8	85	30	23	28	16	1.97
52104864--52104949	25	3.4	25	73	13	70	39	17	22	20	1.92
52112550--52112628	25	3.0	27	72	10	65	30	25	27	16	1.97
52114253--52114311	25	2.4	26	83	11	79	40	20	22	16	1.91
52126781--52126958	27	6.6	27	83	3	205	26	15	28	29	1.96
52126782--52126937	82	1.9	81	88	3	233	26	15	28	29	1.96
52126778--52126958	82	2.2	81	83	2	229	27	15	27	29	1.96
52131207--52131448	43	5.6	43	87	0	304	18	16	24	40	1.90
52131201--52131452	129	2.0	129	88	0	378	18	15	24	41	1.90
52131207--52131489	86	3.3	82	78	9	280	19	15	22	41	1.90
52131203--52131489	129	2.2	129	83	3	328	19	15	22	41	1.90
52134315--52134362	19	2.5	19	86	6	62	50	0	27	22	1.50
52140346--52140542	59	3.1	59	64	24	148	37	10	10	41	1.75
52140280--52140542	131	2.0	131	99	0	517	36	9	12	41	1.75
52147099--52147176	29	2.7	28	84	11	104	25	14	30	29	1.94
52147129--52147456	174	1.9	174	96	0	611	30	14	24	31	1.94
52155037--52155114	29	2.7	28	84	11	104	25	14	30	29	1.94
52155067--52155394	174	1.9	174	96	0	611	30	14	24	30	1.95
52168869--52168896	12	2.3	12	100	0	56	7	21	42	28	1.79
52170430--52170463	16	2.1	17	88	5	52	35	20	5	38	1.77
52177115--52177205	35	2.6	36	87	3	139	20	24	23	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52177152--52177321	76	2.2	76	84	4	209	22	19	24	33	1.97
52180177--52180212	18	2.0	18	94	0	63	38	2	50	8	1.47
52183018--52183056	18	2.2	17	86	13	53	33	0	20	46	1.51
52187645--52187686	21	2.0	21	86	13	59	61	4	2	30	1.29
52190224--52190257	15	2.2	16	89	5	52	61	5	5	26	1.42
52192291--52192417	50	2.5	51	87	3	168	24	18	26	29	1.98
52192291--52192427	51	2.7	50	86	3	177	24	18	27	29	1.98
52203173--52203225	27	2.0	27	88	0	79	9	28	20	41	1.83
52209314--52209346	11	3.0	11	100	0	66	36	0	0	63	0.95
52209451--52209503	18	3.0	18	77	2	63	50	1	1	45	1.23
52209454--52209529	35	2.2	35	84	11	95	52	2	1	43	1.23
52209512--52209564	21	2.5	20	82	14	54	47	3	3	45	1.39
52212631--52212778	25	6.0	25	81	6	142	35	18	21	24	1.96
52212916--52212949	13	2.5	14	85	9	52	47	11	5	35	1.65
52216117--52216399	84	3.4	84	100	0	566	30	25	14	29	1.95
52220016--52220086	25	2.8	25	87	4	90	30	21	26	21	1.98
52222891--52222950	10	6.4	9	75	9	50	73	0	3	23	0.98
52222871--52222951	18	4.3	18	74	17	67	69	0	2	28	1.02
52237307--52237345	20	2.0	20	90	10	62	56	7	20	15	1.63
52242503--52242680	45	4.0	44	81	5	180	35	26	14	23	1.93
52249096--52249227	50	2.6	50	80	2	140	28	24	27	19	1.99
52249160--52249338	49	3.6	49	87	3	227	32	20	24	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52249541--52249579	20	2.0	20	90	10	62	56	5	23	15	1.59
52253054--52253083	14	2.1	14	93	0	51	30	6	13	50	1.67
52255895--52256218	51	6.4	50	74	4	272	29	13	26	30	1.94
52255891--52256218	102	3.2	102	88	0	496	29	13	26	30	1.94
52256208--52256315	50	2.2	49	91	1	171	31	15	23	29	1.95
52273231--52273273	10	4.0	10	80	16	50	39	0	2	58	1.11
52276859--52276896	3	12.7	3	83	10	51	28	0	0	71	0.87
52276920--52276960	18	2.3	18	87	8	57	34	0	9	56	1.32
52298845--52298911	30	2.2	31	86	2	91	28	16	5	49	1.69
52315435--52315485	20	2.6	19	84	6	66	64	1	0	33	1.05
52315435--52315486	19	2.7	18	80	13	59	63	1	0	34	1.06
52315946--52315995	21	2.3	22	86	3	75	32	30	0	38	1.58
52315967--52316025	29	2.0	30	93	3	102	30	33	0	35	1.58
52315946--52316047	51	2.0	52	88	5	154	32	31	0	36	1.58
52315946--52316025	11	7.6	11	68	16	53	31	32	0	36	1.58
52315996--52316048	22	2.4	23	87	12	76	32	32	0	35	1.58
52316079--52316149	34	2.2	31	92	7	115	35	0	0	64	0.94
52318455--52319374	29	31.6	29	87	0	1282	42	24	0	31	1.58
52322452--52322726	124	2.2	124	93	1	471	33	20	15	30	1.94
52324910--52324960	27	1.9	26	84	4	66	49	0	23	27	1.51
52331384--52331422	14	2.8	14	100	0	78	15	0	35	48	1.45
52333976--52334015	11	3.7	11	83	3	55	20	2	10	67	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52337777--52337830	27	2.0	28	82	10	69	29	14	25	29	1.95
52342847--52343201	178	2.0	178	90	1	559	36	23	9	31	1.86
52343731--52343775	21	2.2	20	84	4	54	53	15	4	26	1.61
52350366--52350589	40	5.7	40	83	8	248	25	22	26	25	2.00
52350366--52350589	79	2.8	80	80	10	262	25	22	26	25	2.00
52350366--52350622	79	3.3	79	79	10	199	26	21	26	25	2.00
52357918--52358088	85	2.0	86	96	1	317	33	12	20	33	1.90
52358442--52358664	39	5.7	40	86	5	262	25	22	27	24	2.00
52358442--52358664	79	2.8	81	85	8	291	25	22	27	24	2.00
52358494--52358697	79	2.6	79	84	5	227	26	21	27	24	1.99
52358596--52358811	109	2.0	109	95	0	387	28	19	25	25	1.99
52363256--52363807	276	2.0	276	100	0	1104	30	18	23	28	1.97
52368630--52368808	27	6.6	27	84	3	207	30	27	15	26	1.96
52368651--52368806	82	1.9	81	88	3	233	29	28	15	26	1.96
52371582--52371845	119	2.2	120	86	4	365	24	22	27	25	2.00
52371582--52371845	40	6.7	40	84	7	324	24	22	27	25	2.00
52371582--52371845	79	3.3	79	89	4	363	24	22	27	25	2.00
52373383--52373463	39	2.1	39	95	0	144	25	30	23	19	1.98
52375449--52375475	9	3.0	9	100	0	54	11	0	0	88	0.50
52376581--52376678	6	18.2	5	80	14	83	76	2	2	19	0.98
52376581--52376666	6	14.3	6	80	8	86	76	2	2	18	1.00
52376581--52376676	11	8.8	11	75	12	92	77	2	2	18	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52376604--52376676	21	3.4	21	86	9	85	79	2	1	16	0.92
52385497--52385720	40	5.6	40	87	3	306	24	23	26	25	2.00
52385501--52385720	83	2.7	80	88	5	302	23	24	27	25	2.00
52394041--52394171	47	2.8	47	89	0	190	27	32	9	31	1.88
52397320--52397349	15	2.0	15	100	0	60	20	26	13	40	1.89
52402049--52402172	42	2.9	42	84	6	133	33	25	15	25	1.95
52403286--52403310	13	1.9	13	100	0	50	48	20	0	32	1.50
52417559--52417645	29	3.0	29	89	3	140	28	31	13	26	1.94
52417560--52417669	57	1.9	57	83	0	139	29	30	13	27	1.94
52421935--52422069	29	4.8	29	79	7	136	25	31	14	28	1.95
52423431--52423466	16	2.2	17	90	5	56	11	5	30	52	1.59
52425174--52425257	43	2.0	42	81	11	100	27	27	17	27	1.98
52428575--52428782	53	3.9	54	80	6	206	22	23	16	37	1.94
52428599--52428782	55	3.4	54	80	5	228	22	23	16	36	1.94
52429543--52429600	30	1.9	30	92	3	98	32	24	8	34	1.86
52435919--52435976	25	2.3	25	82	11	66	65	3	10	20	1.38
52443254--52443332	24	3.3	25	83	3	92	20	15	30	34	1.93
52447448--52447636	9	20.6	9	82	4	234	34	3	20	42	1.68
52450172--52450533	28	12.9	28	99	0	670	27	10	26	35	1.89
52465028--52465063	18	1.9	19	88	5	56	2	19	5	72	1.17
52468092--52468134	16	2.7	16	88	0	59	51	13	23	11	1.74
52468092--52468134	8	5.4	8	80	0	50	51	13	23	11	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52468154--52468191	19	2.0	19	89	0	58	15	18	36	28	1.92
52468311--52468457	28	5.1	28	76	11	138	28	12	31	27	1.93
52476647--52476709	22	2.9	21	77	13	65	33	23	22	20	1.97
52477150--52477499	27	13.0	27	79	2	227	29	8	20	41	1.81
52477152--52477499	54	6.4	54	78	2	261	29	8	20	41	1.81
52477431--52477499	26	2.6	26	88	4	93	27	7	21	43	1.79
52477481--52477564	27	3.1	27	84	0	123	30	21	14	33	1.93
52477826--52477927	47	2.1	47	96	1	186	26	27	16	29	1.97
52478521--52478551	15	2.1	15	93	0	53	29	32	16	22	1.95
52479552--52479634	43	1.9	43	83	9	107	27	30	18	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187