genome.fa.s15.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  144  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43430408--43430507	40	2.5	40	85	0	137	34	21	15	30	1.93
43431272--43431349	39	2.0	39	100	0	156	53	17	0	28	1.44
43454477--43454683	53	3.8	53	77	3	216	19	24	18	37	1.94
43454490--43454683	54	3.6	53	77	4	183	18	24	19	37	1.94
43459854--43459899	23	2.0	23	100	0	92	39	17	13	30	1.87
43465410--43465721	46	6.6	47	74	10	230	24	29	19	27	1.98
43465405--43465729	94	3.4	93	75	12	261	24	29	19	27	1.98
43467342--43468279	45	20.9	45	96	1	1697	28	26	20	24	1.99
43470175--43470219	17	2.6	17	92	0	72	37	17	8	35	1.81
43474345--43474394	27	1.9	26	84	8	66	34	14	10	42	1.78
43479510--43479565	27	2.1	27	93	0	94	21	26	14	37	1.92
43486628--43486703	37	2.1	37	83	14	95	43	23	7	25	1.80
43487357--43487392	17	2.1	17	100	0	72	50	19	5	25	1.69
43490998--43491056	15	3.9	15	79	0	55	52	16	16	13	1.75
43492964--43493039	37	2.1	37	83	14	95	44	22	7	25	1.79
43496692--43496721	10	2.8	11	90	10	53	36	26	0	36	1.57
43502935--43502993	25	2.4	23	76	17	66	52	6	0	40	1.28
43503126--43503166	21	2.0	21	90	0	64	7	19	41	31	1.79
43504973--43505024	25	2.1	24	82	10	61	69	0	1	28	0.99
43505196--43505262	30	2.3	29	92	5	116	37	1	29	31	1.67
43508448--43508493	23	2.0	24	82	4	58	54	6	28	10	1.60
43510565--43510607	22	2.0	22	100	0	86	41	4	16	37	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43511274--43511313	21	2.0	21	85	5	55	35	2	10	52	1.48
43523001--43523048	25	2.0	24	88	8	71	47	10	31	10	1.71
43524509--43524547	16	2.4	16	82	0	51	35	5	25	33	1.78
43524815--43524867	12	4.6	12	78	19	51	49	1	0	49	1.12
43526123--43527096	108	9.0	108	99	0	1930	37	16	12	34	1.86
43529368--43529401	17	2.0	17	94	0	59	32	11	2	52	1.53
43530700--43530740	15	2.7	16	74	11	50	7	26	0	65	1.18
43530918--43530965	15	3.3	14	80	8	60	4	18	0	77	0.93
43530918--43530976	21	2.8	21	87	5	75	6	22	0	71	1.09
43531457--43531566	56	2.0	56	90	0	175	30	17	10	41	1.82
43534011--43534320	155	2.0	155	97	0	584	34	16	20	28	1.94
43536135--43536182	15	3.3	14	80	8	60	4	18	0	77	0.93
43536135--43536193	21	2.8	21	87	5	75	6	22	0	71	1.09
43537083--43537162	33	2.5	32	80	15	101	12	10	2	75	1.15
43537081--43537156	32	2.5	30	76	15	84	10	9	2	77	1.08
43537195--43537232	12	2.9	14	80	15	53	21	7	0	71	1.11
43537201--43537244	12	3.8	12	80	17	56	18	2	0	79	0.83
43539169--43539222	25	2.2	25	86	0	72	16	18	18	46	1.85
43539307--43539448	76	1.9	76	88	2	214	43	18	11	26	1.83
43541142--43541167	12	2.2	12	100	0	52	30	15	38	15	1.88
43541813--43541878	29	2.3	29	81	0	69	39	12	25	22	1.89
43541867--43541938	29	2.4	30	90	2	110	43	13	27	15	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43541924--43541998	30	2.5	32	76	10	86	36	12	25	26	1.91
43541986--43542057	30	2.4	30	83	0	90	41	12	27	18	1.86
43541864--43542057	60	3.3	59	69	7	158	39	13	25	21	1.90
43541896--43542067	90	1.9	90	83	2	220	37	14	26	22	1.92
43543163--43543270	42	2.6	41	86	2	135	19	19	37	23	1.94
43543174--43543272	42	2.4	42	89	0	144	18	18	40	23	1.91
43547161--43547244	6	13.0	6	70	18	53	73	0	20	5	1.03
43547216--43547269	13	4.5	13	75	17	55	72	0	20	7	1.08
43547192--43547269	19	4.3	18	74	21	65	73	0	19	7	1.07
43550174--43550371	50	3.8	50	82	4	207	22	28	20	27	1.99
43553030--43553068	10	3.9	10	82	0	51	17	23	17	41	1.91
43567211--43567240	16	1.9	16	93	6	53	50	20	0	30	1.49
43592758--43592868	40	2.8	40	80	4	136	36	21	23	18	1.95
43592909--43593185	41	6.8	41	82	2	288	22	20	25	30	1.98
43592910--43593185	122	2.3	123	85	3	360	22	21	25	30	1.98
43593800--43593862	26	2.3	28	83	8	85	19	1	42	36	1.61
43593844--43593881	8	4.8	8	81	12	51	21	0	42	36	1.53
43593800--43593957	7	22.3	7	67	19	78	19	1	41	37	1.60
43593891--43593919	15	1.9	15	100	0	58	13	0	48	37	1.43
43594242--43594556	50	6.3	50	98	0	603	53	0	5	41	1.23
43594272--43594522	15	19.6	14	64	32	68	54	0	5	40	1.24
43598766--43598877	41	2.7	42	78	10	131	25	11	25	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43600892--43600939	21	2.3	22	79	17	57	43	0	2	54	1.12
43602094--43602143	24	2.0	25	85	11	68	40	2	4	54	1.31
43602441--43602584	67	2.1	67	94	0	252	46	12	2	38	1.53
43602707--43602744	19	2.1	18	95	5	67	60	0	0	39	0.97
43602835--43602892	27	2.0	27	87	9	80	37	0	0	62	0.96
43605573--43605598	5	5.2	5	100	0	52	38	19	19	23	1.93
43605547--43605598	26	2.0	26	81	7	61	34	15	26	23	1.94
43606015--43606063	19	2.8	17	79	14	55	42	0	30	26	1.55
43613122--43613196	38	2.0	37	97	0	132	17	24	21	36	1.94
43615568--43615613	20	2.4	19	85	3	56	23	26	15	34	1.94
43617002--43617038	12	3.0	12	96	4	65	64	0	8	27	1.21
43622167--43622277	56	2.0	56	98	0	213	16	18	29	35	1.93
43625872--43625924	23	2.4	22	76	20	56	9	18	1	69	1.25
43630102--43630154	23	2.4	22	76	20	56	9	18	1	69	1.25
43637515--43637917	202	2.0	202	100	0	806	38	13	15	31	1.87
43639029--43639075	15	3.1	15	81	9	51	68	0	19	12	1.21
43639019--43639075	28	2.0	29	83	13	73	68	0	19	12	1.20
43639105--43639180	12	6.3	12	68	17	50	61	1	25	11	1.38
43639128--43639161	15	2.3	15	89	0	50	67	0	29	2	1.05
43645088--43645128	21	2.0	21	95	0	73	56	7	0	36	1.27
43646481--43646543	31	2.0	31	90	0	99	39	14	19	26	1.90
43650379--43650409	2	15.5	2	100	0	62	0	0	48	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43659784--43659826	22	2.0	22	90	0	68	9	18	27	44	1.80
43659918--43660247	42	7.9	42	95	1	529	33	21	20	24	1.97
43660316--43660349	14	2.4	14	95	0	59	52	20	8	17	1.71
43660573--43660643	21	3.4	21	80	0	79	2	45	18	33	1.64
43666095--43666259	18	9.5	18	66	30	69	33	0	20	45	1.52
43666095--43666259	7	19.0	9	65	32	69	33	0	20	45	1.52
43666140--43666472	76	4.1	77	77	17	339	32	1	20	45	1.60
43666295--43666459	18	9.5	18	66	30	69	33	0	20	45	1.52
43666295--43666459	7	19.0	9	65	32	69	33	0	20	45	1.52
43666068--43666464	200	2.0	200	100	0	794	32	2	20	44	1.65
43666649--43666743	25	3.7	24	90	5	100	35	1	18	44	1.58
43666382--43666906	271	1.9	270	97	1	998	38	8	12	40	1.73
43668972--43669047	7	10.9	7	74	5	64	46	35	1	17	1.56
43669088--43669137	17	3.0	17	94	2	84	50	16	0	34	1.45
43669159--43669509	113	3.1	111	80	7	411	26	23	19	30	1.98
43669294--43669691	188	2.1	188	94	0	688	26	23	18	31	1.97
43669482--43669907	114	3.7	114	79	4	464	26	23	19	30	1.98
43676611--43676833	40	5.6	40	85	3	236	26	27	21	24	1.99
43676765--43676842	40	1.9	41	82	10	97	26	28	21	23	1.99
43694913--43695104	41	4.7	41	87	3	271	31	20	23	23	1.98
43695104--43695196	42	2.2	41	79	7	96	22	13	26	36	1.92
43698863--43698892	15	2.0	15	100	0	60	46	0	20	33	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43699400--43699531	67	2.0	67	98	0	255	37	13	20	28	1.91
43702644--43702831	41	4.6	41	90	0	268	32	19	23	24	1.98
43711398--43711577	41	4.4	41	81	2	184	23	27	13	35	1.93
43711456--43711521	20	3.2	20	69	12	62	19	36	10	33	1.86
43711413--43711570	82	1.9	82	84	5	212	21	29	13	35	1.91
43712790--43712985	48	4.1	48	85	0	239	28	21	27	22	1.99
43718344--43718539	48	4.1	48	85	0	239	28	21	27	22	1.99
43722980--43723173	50	3.9	50	86	0	262	26	21	29	22	1.99
43726412--43726802	50	7.8	50	86	2	525	26	21	31	20	1.98
43728394--43728488	50	1.9	50	88	0	145	23	16	29	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187