genome.fa.s15.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  69  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20245229--20245330	6	17.0	6	84	0	114	45	35	18	0	1.57
20266064--20266124	11	5.5	11	86	5	70	22	29	0	47	1.52
20267931--20267968	18	2.1	18	90	0	58	21	26	10	42	1.85
20268393--20268562	49	3.5	49	95	0	304	44	2	8	44	1.49
20271392--20271709	106	3.0	106	96	0	566	32	17	12	37	1.87
20272424--20272464	16	2.5	17	76	15	50	51	0	2	46	1.14
20279255--20279294	17	2.4	17	95	4	73	37	0	0	62	0.95
20289009--20289063	18	3.1	18	92	5	85	30	1	67	0	1.01
20289009--20289063	6	9.2	6	78	7	58	30	1	67	0	1.01
20290460--20290485	2	13.0	2	100	0	52	50	0	0	50	1.00
20291147--20291228	21	3.6	24	73	20	70	39	8	14	37	1.77
20291147--20291192	21	2.2	21	100	0	92	39	8	13	39	1.75
20291666--20291709	3	14.3	3	86	13	63	36	0	0	63	0.95
20291970--20292069	52	1.9	51	82	6	121	30	7	7	56	1.53
20296570--20296609	4	10.2	4	84	15	57	70	2	0	27	1.01
20301140--20301185	21	2.1	23	84	8	60	39	4	13	43	1.63
20301342--20301380	19	2.0	21	85	10	55	15	10	5	69	1.34
20301601--20301644	3	14.3	3	81	13	54	34	0	0	65	0.93
20301585--20301644	15	4.2	15	71	16	56	31	0	1	66	1.01
20303773--20303809	13	2.9	14	88	11	53	72	0	27	0	0.84
20303773--20303809	14	2.9	13	85	14	51	72	0	27	0	0.84
20305117--20305151	18	1.9	18	94	0	61	60	2	2	34	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20305077--20305152	9	8.0	9	73	15	55	60	1	2	35	1.19
20305059--20305178	39	3.1	37	77	17	120	64	0	3	31	1.16
20307040--20307264	33	6.8	32	67	10	123	32	15	25	27	1.96
20307037--20307165	66	2.0	66	81	6	154	33	17	24	24	1.96
20307041--20307261	99	2.2	99	87	3	336	31	15	25	27	1.96
20307336--20307374	19	2.1	19	100	0	78	43	0	15	41	1.46
20310597--20310631	17	2.1	17	89	5	54	31	14	5	48	1.67
20310674--20311072	200	2.0	200	99	0	789	35	20	8	36	1.82
20320959--20321019	3	20.3	3	100	0	122	0	32	0	67	0.91
20325846--20325883	19	2.0	20	84	5	51	42	18	13	26	1.87
20328639--20328712	29	2.6	29	82	4	96	35	9	6	48	1.62
20350087--20350125	16	2.4	15	84	16	51	48	0	0	51	1.00
20351306--20351363	30	1.9	30	85	0	80	18	39	0	41	1.51
20353485--20353554	31	2.3	31	92	0	113	28	24	10	37	1.88
20353632--20353674	19	2.3	18	88	4	68	62	0	9	27	1.25
20353887--20353925	15	2.6	16	88	8	55	56	5	0	38	1.22
20355501--20355636	72	1.9	72	90	3	220	31	19	19	29	1.96
20356016--20356070	25	2.2	26	86	3	76	50	0	9	40	1.34
20357756--20357802	20	2.4	19	89	3	67	21	2	6	70	1.20
20357757--20357802	19	2.3	20	88	3	67	21	2	4	71	1.14
20357799--20357840	18	2.3	19	84	12	52	28	7	2	61	1.35
20358773--20359095	114	2.9	114	92	0	533	36	15	17	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20360305--20360344	20	2.0	20	90	0	62	37	5	25	32	1.77
20371738--20372033	110	2.7	110	89	0	421	34	18	14	32	1.91
20372189--20372241	22	2.4	23	79	17	60	69	7	7	15	1.34
20372531--20372569	3	12.7	3	89	5	60	66	5	0	28	1.12
20374160--20374500	44	7.8	43	67	14	178	27	23	18	29	1.98
20374139--20374566	132	3.2	132	92	0	721	28	22	18	30	1.98
20374826--20374982	41	3.8	41	77	5	179	29	21	21	27	1.98
20374826--20375502	44	15.7	44	69	10	254	27	21	19	30	1.98
20374829--20375281	85	5.3	85	73	11	377	28	21	20	30	1.98
20374914--20375416	129	3.9	129	85	3	683	28	21	19	31	1.97
20374825--20375230	214	1.9	212	81	7	489	26	21	20	31	1.98
20374914--20375415	258	1.9	258	92	0	844	27	21	19	31	1.97
20374914--20375502	129	4.5	130	83	4	674	27	22	19	30	1.98
20375426--20375591	89	1.9	87	85	5	226	27	22	21	28	1.99
20375257--20375944	44	15.7	45	75	8	358	28	22	19	29	1.98
20375297--20375906	308	2.0	308	88	3	913	28	22	19	29	1.98
20375695--20376036	44	7.8	44	74	8	169	28	21	18	30	1.97
20375425--20376035	265	2.3	265	89	0	911	28	22	19	30	1.98
20378073--20378369	110	2.7	109	88	1	396	32	14	17	34	1.91
20379037--20379097	23	2.7	22	80	9	61	55	3	1	39	1.26
20379089--20379135	17	2.8	17	83	0	58	61	0	0	38	0.96
20380061--20380109	18	2.7	18	78	12	64	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20394070--20394289	108	2.0	108	97	0	413	27	15	30	27	1.96
20396044--20396068	7	3.6	7	100	0	50	48	12	12	28	1.76
20404945--20405056	56	2.0	56	92	0	188	26	32	16	24	1.96
20406864--20406898	18	1.9	18	94	0	61	25	8	25	40	1.84
20415972--20416015	22	2.0	22	86	0	61	63	0	2	34	1.07
20418143--20418178	15	2.5	14	86	8	54	44	8	0	47	1.33
20418726--20418783	22	2.6	22	73	7	64	56	1	3	37	1.26
20422758--20422807	26	2.0	25	96	4	91	62	0	4	34	1.14
20422865--20422899	10	3.6	10	96	3	63	28	5	0	65	1.15
20425867--20425914	21	2.3	21	85	0	60	6	43	16	33	1.73
20439995--20440043	21	2.3	23	75	17	59	38	24	2	34	1.67
20440029--20440064	14	2.6	14	86	0	54	38	27	2	30	1.71
20440000--20440054	21	2.7	20	83	8	74	41	25	1	30	1.66
20440088--20440118	14	2.2	14	94	0	53	29	6	25	38	1.81
20441640--20441666	14	1.9	14	100	0	54	37	3	7	51	1.48
20442198--20442239	22	1.9	23	85	9	61	59	7	2	30	1.37
20445080--20445109	12	2.5	12	94	0	51	33	13	10	43	1.77
20451926--20451982	5	11.0	5	80	10	53	17	5	0	77	0.95
20451927--20451982	6	9.5	6	83	16	57	16	5	0	78	0.92
20454573--20454643	22	3.2	22	62	15	56	46	9	11	32	1.72
20454570--20454658	44	2.0	44	100	0	178	48	8	8	33	1.66
20455890--20456065	41	4.3	41	78	4	203	20	19	26	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20456850--20457129	139	2.0	139	83	2	348	26	9	18	46	1.79
20456850--20457129	70	4.0	69	83	3	319	26	9	18	46	1.79
20456946--20457153	23	9.0	23	70	13	115	27	7	19	45	1.77
20459607--20459634	9	3.1	9	100	0	56	57	10	0	32	1.33
20461014--20461055	21	2.0	21	81	13	50	61	14	11	11	1.56
20463581--20463611	14	2.3	14	94	5	55	83	3	0	12	0.75
20465148--20465442	44	6.8	44	75	6	204	24	22	22	30	1.99
20465107--20465441	131	2.6	131	93	0	553	24	21	23	30	1.99
20465104--20465436	87	3.8	87	75	5	285	24	21	23	30	1.99
20465107--20465485	131	2.9	131	88	2	476	24	21	22	30	1.99
20465458--20466159	90	7.9	90	69	10	340	26	24	20	28	1.99
20465460--20466017	134	4.2	134	96	0	958	27	24	19	28	1.99
20465457--20466154	44	15.7	41	70	13	342	26	24	20	28	1.99
20467400--20467439	7	6.0	7	88	11	66	12	15	0	72	1.12
20467400--20467439	13	3.0	13	88	3	62	12	15	0	72	1.12
20467403--20467439	20	1.9	20	94	5	67	10	13	0	75	1.04
20468350--20468458	45	2.4	47	79	13	113	9	11	2	76	1.12
20468383--20468447	22	2.8	23	75	15	71	9	6	4	80	1.03
20477152--20477185	14	2.3	15	90	5	52	82	5	5	5	0.95
20478647--20478941	44	6.8	44	75	6	213	24	22	22	30	1.99
20478606--20478940	131	2.6	131	94	0	562	24	21	23	30	1.99
20478603--20478935	87	3.8	87	76	5	294	24	21	23	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20478606--20479024	131	3.2	130	85	4	364	24	22	22	30	1.99
20478957--20479658	90	7.9	90	70	10	390	26	24	20	28	1.99
20478959--20479516	134	4.2	134	96	0	976	27	24	20	28	1.99
20478956--20479653	44	15.7	42	71	11	414	26	24	20	28	1.99
20480897--20480936	7	6.0	7	82	11	57	17	12	0	70	1.18
20480897--20480935	13	3.0	13	96	0	69	17	12	0	69	1.19
20484203--20484236	14	2.3	15	90	5	52	82	5	5	5	0.95
20489624--20489657	17	1.9	17	88	5	50	20	14	8	55	1.65
20506017--20506073	30	1.9	30	96	0	105	12	24	36	26	1.91
20509435--20509479	20	2.2	20	81	11	56	44	0	53	2	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187