genome.fa.s15.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  151  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45452203--45452251	23	2.1	23	85	14	66	12	0	10	77	0.99
45452215--45452248	18	1.9	17	88	5	50	17	0	8	73	1.08
45456729--45456813	30	2.9	30	80	1	82	31	20	14	34	1.92
45459464--45459675	18	11.8	18	81	3	203	3	15	28	52	1.59
45459464--45459672	54	3.9	54	82	2	231	3	14	28	52	1.59
45464102--45464162	28	2.1	29	82	8	72	34	0	4	60	1.18
45464112--45464147	18	1.9	19	88	5	56	38	0	5	55	1.23
45464232--45464261	9	3.3	9	90	0	51	30	10	13	46	1.75
45465928--45465979	3	17.3	3	83	0	59	26	5	3	63	1.34
45466242--45466339	43	2.3	43	96	0	178	32	25	17	24	1.97
45472150--45472182	18	1.9	17	88	11	50	48	0	15	36	1.45
45474049--45474153	46	2.3	46	91	3	167	38	13	21	26	1.91
45473186--45474143	151	6.4	151	97	1	1770	35	14	21	28	1.93
45474117--45474188	37	2.0	37	91	5	121	34	16	23	25	1.95
45476628--45477082	110	4.1	110	83	5	596	30	17	17	34	1.93
45477880--45477904	3	8.3	3	100	0	50	32	68	0	0	0.90
45478423--45478458	6	6.0	6	100	0	72	16	16	0	66	1.25
45478864--45478927	16	3.7	17	76	15	60	45	15	1	37	1.56
45479973--45480009	18	2.1	18	90	10	58	59	0	5	35	1.20
45488459--45488776	152	2.1	148	84	5	399	43	5	9	41	1.61
45489021--45489099	27	3.1	25	80	8	88	16	25	21	36	1.94
45489128--45489182	24	2.2	25	78	12	60	23	27	16	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45496468--45496526	24	2.5	24	83	8	84	22	30	18	28	1.97
45496699--45496757	24	2.4	24	81	16	68	20	27	23	28	1.99
45497237--45497307	11	6.8	11	73	23	73	32	1	0	66	1.01
45497237--45497307	17	3.4	22	78	20	73	32	1	0	66	1.01
45497226--45497327	51	2.0	52	94	3	179	36	1	0	61	1.07
45497300--45497368	33	2.2	31	84	5	84	36	1	0	62	1.04
45499030--45499076	24	2.0	24	84	16	62	51	17	0	31	1.46
45499775--45499804	15	2.1	14	93	6	51	6	20	0	73	1.05
45505261--45505405	41	3.5	41	84	0	200	24	28	18	28	1.98
45505873--45506341	114	4.1	113	96	1	814	39	14	4	41	1.65
45507318--45507342	13	1.9	13	100	0	50	68	24	0	8	1.16
45508660--45508711	21	2.5	20	84	9	68	42	19	0	38	1.51
45511513--45511566	23	2.3	23	83	6	63	24	40	18	16	1.90
45513546--45513621	25	3.0	25	74	12	66	35	22	22	19	1.96
45513658--45513754	25	3.9	25	72	21	80	39	18	23	18	1.92
45514059--45514140	40	2.0	40	100	0	164	26	26	7	39	1.82
45518959--45519135	21	8.4	21	73	2	122	43	17	20	18	1.88
45518959--45519135	42	4.2	42	77	2	167	43	17	20	18	1.88
45518957--45519122	84	2.0	84	81	2	199	43	17	20	18	1.88
45519587--45519640	21	2.8	20	78	16	69	38	14	0	46	1.45
45523882--45523940	27	2.1	28	87	3	84	42	0	0	57	0.98
45523906--45523953	15	3.1	15	77	14	53	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45523910--45523968	31	1.9	31	82	6	75	44	1	0	54	1.10
45527137--45527307	73	2.4	71	91	2	270	25	25	26	22	2.00
45527207--45527575	114	3.2	114	91	0	605	24	22	27	25	2.00
45527821--45527866	22	2.1	22	83	0	56	26	0	28	45	1.54
45527869--45527919	15	3.5	15	79	12	61	19	0	47	33	1.50
45528189--45528223	14	2.5	14	90	9	54	22	0	45	31	1.53
45531011--45531582	254	2.3	243	87	4	797	45	12	12	28	1.79
45531502--45531554	24	2.2	25	82	3	63	69	5	0	24	1.09
45533988--45534172	95	2.0	94	87	1	271	14	24	16	45	1.84
45535335--45535541	43	4.8	43	84	0	254	25	17	29	27	1.98
45537376--45537488	42	2.7	42	83	5	147	23	23	21	30	1.99
45537918--45537968	21	2.4	21	90	0	75	1	41	19	37	1.63
45542329--45542369	9	4.6	9	88	8	57	36	7	21	34	1.82
45565500--45566622	175	6.4	175	97	0	2062	27	23	19	30	1.98
45574863--45575006	72	2.0	72	97	0	270	13	29	15	41	1.85
45575641--45575810	84	2.0	84	98	0	331	19	27	17	35	1.94
45578532--45578691	32	4.9	32	92	2	239	17	25	18	39	1.92
45580649--45580700	20	2.8	18	76	21	54	51	7	1	38	1.42
45587641--45587680	12	3.3	12	89	0	62	65	0	5	30	1.14
45602480--45602540	26	2.4	26	86	2	79	44	11	6	37	1.67
45602696--45602750	25	2.2	25	81	12	60	49	5	1	43	1.36
45605443--45605477	16	2.2	16	89	0	52	62	22	0	14	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45605449--45605492	22	2.0	22	81	0	52	61	25	0	13	1.32
45607340--45607392	21	2.5	21	90	6	81	30	35	9	24	1.87
45608601--45608665	29	2.2	29	83	5	76	53	13	10	21	1.70
45608601--45608688	31	2.9	29	79	6	86	53	12	12	21	1.71
45610442--45610488	20	2.3	20	92	0	76	61	2	2	34	1.20
45610514--45610566	11	5.2	10	73	13	54	64	0	0	35	0.94
45610414--45610566	20	7.7	19	71	15	73	64	1	3	30	1.20
45610747--45610819	21	3.6	20	74	18	62	28	9	0	61	1.27
45610748--45610839	20	4.7	19	74	15	71	29	8	0	61	1.25
45611613--45611643	11	2.9	11	95	4	55	29	0	0	70	0.87
45615836--45615885	25	2.0	25	96	0	91	16	22	32	30	1.95
45615841--45615883	13	3.4	13	74	6	52	18	20	32	27	1.96
45620945--45620973	9	3.0	10	90	10	51	58	0	20	20	1.39
45621235--45621303	26	2.7	26	88	8	97	36	8	20	34	1.83
45630030--45630072	19	2.3	19	88	8	61	27	2	2	67	1.15
45630043--45630095	21	2.6	21	82	8	56	26	3	1	67	1.17
45634290--45634381	13	7.0	13	84	7	114	32	2	7	57	1.39
45634310--45634413	27	3.9	27	76	5	86	34	2	7	54	1.44
45634417--45634450	15	2.3	15	94	0	59	41	14	2	41	1.61
45634601--45634696	40	2.4	40	91	3	149	37	4	4	54	1.39
45634601--45634687	27	3.3	26	85	3	93	37	4	3	54	1.38
45634563--45634696	13	10.2	13	74	10	103	38	3	4	52	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45637694--45637741	25	1.9	25	100	0	96	39	4	8	47	1.53
45637813--45637846	16	2.1	16	94	0	59	50	5	2	41	1.42
45642767--45642795	12	2.3	13	94	5	51	13	0	3	82	0.79
45642980--45643040	32	2.0	30	84	9	79	39	6	1	52	1.37
45643537--45643864	109	3.0	109	93	0	543	31	17	18	33	1.94
45649597--45649627	16	1.9	16	93	0	53	19	16	38	25	1.92
45655162--45655763	44	13.8	44	65	11	173	30	17	24	27	1.97
45655157--45655848	131	5.3	131	91	1	1084	29	18	24	27	1.98
45655284--45655632	87	4.0	87	66	13	205	28	19	24	26	1.98
45655332--45655777	44	10.2	44	66	16	185	30	18	23	27	1.98
45657464--45657492	12	2.3	13	94	5	51	13	0	3	82	0.79
45657664--45657699	16	2.2	17	90	5	56	36	11	0	52	1.37
45657671--45657731	32	2.0	30	84	9	79	39	6	1	52	1.37
45657799--45657832	16	2.2	15	89	5	50	38	2	0	58	1.13
45662025--45662082	29	2.0	29	96	0	107	36	0	29	34	1.58
45662736--45662782	24	1.9	25	83	12	62	17	21	19	42	1.89
45662736--45662782	25	1.9	25	83	12	62	17	21	19	42	1.89
45662840--45662940	26	3.9	25	87	5	112	16	21	19	41	1.90
45663010--45663071	24	2.6	24	77	10	72	16	20	22	40	1.91
45663018--45663128	25	4.5	24	70	11	84	18	19	20	40	1.92
45671257--45671444	81	2.3	82	88	5	267	36	16	28	18	1.93
45671257--45671444	41	4.6	41	88	4	258	36	16	28	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45671323--45671386	20	3.2	20	68	4	65	39	17	31	12	1.87
45683667--45683697	14	2.3	13	94	5	53	45	6	0	48	1.28
45683811--45684214	215	1.9	216	87	1	605	32	16	10	40	1.83
45686733--45686777	15	2.9	17	71	25	53	37	26	6	28	1.82
45691152--45691208	28	2.0	28	83	12	73	17	1	3	77	1.00
45691151--45691204	15	3.4	16	80	12	58	16	1	3	77	1.00
45698026--45698051	5	5.2	5	100	0	52	38	19	19	23	1.93
45698000--45698051	26	2.0	26	81	7	61	34	15	26	23	1.94
45698696--45698755	30	2.0	31	86	3	86	40	0	40	20	1.52
45698891--45698931	21	2.0	21	85	9	57	43	0	34	21	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187