genome.fa.s15.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  157  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47323617--47323654	20	1.9	20	94	0	67	18	2	21	57	1.52
47325267--47325320	26	2.1	26	89	0	81	20	24	22	33	1.97
47325277--47325332	26	2.2	26	83	0	67	16	25	28	30	1.96
47325321--47325539	32	6.8	33	80	6	225	18	21	23	36	1.94
47325320--47325539	64	3.4	64	80	7	259	18	21	23	37	1.94
47325320--47325534	98	2.2	96	82	6	256	17	21	23	37	1.94
47325616--47325668	26	2.0	26	85	0	70	26	20	18	33	1.96
47329237--47329283	24	2.0	24	82	0	58	25	21	14	38	1.92
47330941--47331008	16	4.2	16	94	0	118	27	0	33	38	1.57
47331244--47331278	18	2.0	17	88	5	52	54	0	0	45	0.99
47331846--47331875	13	2.3	13	94	0	51	56	13	6	23	1.60
47339448--47339536	46	1.9	46	90	0	142	34	10	19	35	1.85
47346696--47346771	11	6.8	11	68	24	52	55	2	1	40	1.22
47346696--47346771	37	2.1	36	83	11	93	55	2	1	40	1.22
47348377--47348408	15	2.1	15	94	0	55	68	9	6	15	1.36
47360002--47360048	24	2.0	24	86	0	67	65	2	0	31	1.04
47371385--47371438	24	2.2	25	83	3	65	70	3	5	20	1.23
47373661--47373699	20	1.9	21	89	5	62	58	5	0	35	1.20
47374722--47374749	3	9.3	3	100	0	56	67	0	0	32	0.91
47375215--47375256	3	14.0	3	87	0	57	61	4	0	33	1.17
47376446--47376477	9	3.6	9	100	0	64	18	9	37	34	1.83
47376907--47376993	45	2.0	44	83	2	111	21	28	24	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47377104--47377357	88	2.9	88	81	1	267	23	23	25	27	2.00
47377282--47377463	44	4.2	44	70	5	118	25	23	21	29	1.99
47377636--47377907	44	6.2	44	84	2	323	30	23	15	29	1.96
47379288--47379386	51	1.9	52	85	6	139	16	17	16	50	1.78
47380261--47380305	7	6.4	7	87	7	65	0	15	0	84	0.62
47380261--47380305	15	3.2	14	87	9	65	0	15	0	84	0.62
47380261--47380305	22	2.1	21	91	4	72	0	15	0	84	0.62
47387295--47387335	7	5.7	7	85	2	55	31	0	0	68	0.90
47387371--47387401	5	6.2	5	100	0	62	41	19	19	19	1.90
47387872--47387900	9	3.2	9	100	0	58	68	0	0	31	0.89
47388155--47388214	30	2.0	31	83	9	79	41	0	38	20	1.52
47388428--47388464	9	4.1	9	92	0	65	29	10	13	45	1.77
47388517--47388547	9	3.4	9	90	0	53	38	22	12	25	1.90
47388850--47388887	20	1.9	20	89	10	60	63	0	2	34	1.09
47390556--47390595	16	2.5	16	83	0	53	10	0	37	52	1.35
47390675--47390731	28	2.0	28	100	0	114	38	14	19	28	1.90
47390703--47391051	124	2.8	125	92	0	601	28	17	22	31	1.96
47396218--47396281	21	3.0	22	72	9	69	37	25	18	18	1.94
47397273--47397328	17	3.5	16	78	14	62	44	1	0	53	1.11
47397285--47397335	14	3.6	14	74	25	54	50	0	0	49	1.00
47397272--47397353	28	2.8	28	80	7	83	43	1	0	54	1.07
47397302--47397340	11	3.4	11	86	13	60	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47403229--47403266	10	3.5	11	86	13	53	63	2	0	34	1.09
47412526--47412559	18	2.0	16	88	11	50	35	0	0	64	0.94
47413984--47414062	21	3.6	21	71	17	61	43	1	7	48	1.39
47417093--47418285	125	9.5	126	88	1	1578	28	17	16	37	1.92
47418543--47419939	126	11.1	126	92	1	2103	27	17	17	37	1.92
47418543--47419939	251	5.6	252	91	1	2105	27	17	17	37	1.92
47420012--47420100	33	2.6	35	84	12	114	47	13	0	39	1.43
47420892--47420926	17	2.0	18	88	5	54	62	5	14	17	1.49
47422349--47422399	19	2.7	18	80	16	59	58	0	1	39	1.09
47422385--47422476	19	4.8	19	69	12	62	60	3	2	33	1.25
47422360--47422422	26	2.4	27	84	10	85	58	0	1	39	1.07
47422406--47422480	37	2.0	37	86	5	105	62	4	2	30	1.27
47422631--47422758	47	2.7	46	74	13	127	29	4	3	62	1.31
47422680--47422747	19	3.7	18	76	17	52	29	2	2	64	1.22
47422643--47422721	28	2.8	28	81	7	79	27	5	2	64	1.27
47422698--47422770	37	1.9	38	83	2	94	31	4	2	61	1.29
47422634--47422840	9	22.4	9	68	12	73	31	3	3	61	1.30
47422752--47422804	26	2.0	28	85	7	74	41	0	1	56	1.10
47422876--47423070	105	1.8	106	86	3	286	38	9	20	31	1.84
47423470--47423499	9	3.4	9	90	9	53	40	0	0	60	0.97
47423609--47423643	14	2.4	14	90	9	52	37	2	0	60	1.12
47424678--47424729	19	2.8	18	80	8	59	50	1	1	46	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47428864--47428898	5	6.8	5	90	6	52	85	14	0	0	0.59
47428864--47428901	16	2.5	15	91	8	67	86	13	0	0	0.56
47432293--47432331	16	2.4	16	82	4	51	48	2	5	43	1.38
47435684--47435729	6	7.5	6	87	2	65	52	0	0	47	1.00
47436843--47436893	20	2.5	20	84	12	61	60	3	7	27	1.42
47438964--47438990	10	2.7	10	100	0	54	0	7	0	92	0.38
47443803--47443876	24	3.0	24	80	7	87	17	24	22	35	1.95
47454831--47454874	23	1.9	23	90	0	70	29	4	22	43	1.73
47456418--47456693	50	5.5	50	87	1	383	21	30	22	26	1.99
47456462--47456741	100	2.8	98	89	5	312	23	30	20	26	1.98
47467119--47467203	21	4.0	22	84	7	95	16	23	25	34	1.95
47467132--47467205	21	3.5	21	87	5	96	14	22	27	35	1.94
47474885--47475041	32	5.2	32	59	17	82	30	21	10	37	1.87
47474873--47475109	60	4.0	60	96	1	422	29	21	9	39	1.85
47478192--47478614	216	1.9	217	89	2	663	28	22	19	30	1.98
47478074--47478958	172	5.1	171	82	7	1008	28	22	19	29	1.98
47478192--47478784	216	2.7	214	83	6	583	28	22	19	29	1.98
47478321--47479002	45	15.7	45	73	14	255	27	23	20	29	1.99
47481308--47481359	26	2.0	26	100	0	104	26	23	15	34	1.94
47491038--47491062	2	12.5	2	100	0	50	52	0	0	48	1.00
47495281--47495336	21	2.7	21	91	0	94	25	8	37	28	1.86
47505051--47505080	13	2.3	13	94	0	51	23	6	13	56	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47505832--47505866	18	2.0	17	88	5	52	45	0	0	54	0.99
47506102--47506169	16	4.2	16	94	0	118	38	33	0	27	1.57
47517495--47517551	14	3.9	15	86	11	75	38	0	0	61	0.96
47517495--47517538	7	6.3	7	92	7	72	38	0	0	61	0.96
47519637--47519750	43	2.7	43	86	6	144	25	16	27	30	1.97
47522019--47522075	28	2.0	28	89	0	87	22	24	26	26	2.00
47522147--47522219	26	2.8	26	82	0	92	34	21	26	17	1.96
47522422--47522886	27	17.2	27	84	3	569	18	18	19	43	1.88
47529193--47529220	14	2.0	14	100	0	56	35	7	0	57	1.26
47539630--47539657	14	2.0	14	100	0	56	35	7	0	57	1.26
47545419--47545566	43	3.5	43	80	8	158	29	15	25	29	1.96
47550875--47550923	18	2.8	18	75	3	55	53	10	14	22	1.71
47560626--47560662	18	2.1	18	90	10	58	45	0	0	54	1.00
47560626--47560675	18	2.9	17	80	13	57	38	0	0	62	0.96
47560660--47560712	17	2.8	19	77	13	56	37	0	1	60	1.08
47563489--47563517	15	1.9	15	100	0	58	13	13	3	68	1.33
47566197--47566267	33	2.2	33	89	0	106	36	29	4	29	1.76
47570681--47570736	25	2.2	26	96	3	105	55	3	0	41	1.17
47594041--47594069	12	2.3	13	94	5	51	20	6	6	65	1.40
47600259--47600520	39	6.7	40	87	7	337	25	22	27	24	2.00
47612941--47612969	13	2.1	14	93	6	51	10	17	0	72	1.11
47615296--47615380	45	1.9	44	83	7	109	37	16	16	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47615702--47615726	12	2.1	12	100	0	50	28	0	8	64	1.22
47621922--47621972	20	2.5	20	74	0	57	45	33	1	19	1.62
47624766--47624873	41	2.6	41	89	0	171	26	30	20	22	1.98
47624859--47624937	41	1.9	41	94	0	140	20	24	24	31	1.98
47624984--47625008	12	2.1	12	100	0	50	52	32	8	8	1.60
47625204--47625251	20	2.5	20	86	3	62	64	2	6	27	1.28
47625300--47625329	5	5.8	5	96	4	51	76	0	0	23	0.78
47630615--47630700	43	2.0	43	100	0	172	37	20	13	27	1.91
47641070--47641106	12	3.0	13	84	11	51	29	40	18	10	1.85
47646639--47646836	101	2.0	101	86	0	279	40	14	9	35	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187