genome.fa.s15.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  37  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10737482--10737579	37	2.7	38	77	6	112	39	2	3	55	1.27
10746748--10746805	30	1.9	30	89	0	89	41	3	24	31	1.71
10747017--10747048	13	2.5	13	94	0	55	31	0	12	56	1.37
10747143--10747384	50	4.7	50	86	4	297	26	24	29	19	1.99
10747143--10747392	100	2.4	103	88	6	364	26	24	29	20	1.99
10754342--10754399	30	1.9	30	89	0	89	41	3	24	31	1.71
10754611--10754642	13	2.5	13	94	0	55	31	0	12	56	1.37
10754737--10754978	50	4.7	50	86	4	297	26	24	29	19	1.99
10754737--10754986	100	2.4	103	88	6	364	26	24	29	20	1.99
10775886--10776114	69	3.3	69	84	1	262	36	23	21	18	1.95
10796888--10798643	877	2.0	877	100	0	3512	18	23	22	35	1.96
10807752--10807799	18	2.6	17	81	18	53	43	4	6	45	1.48
10809480--10809605	63	2.0	63	92	0	207	33	17	21	27	1.96
10810276--10810364	31	2.8	32	77	15	103	62	7	1	28	1.30
10811296--10811388	18	5.2	18	90	0	150	27	24	16	31	1.96
10817126--10817156	7	4.4	7	95	0	53	9	0	3	87	0.66
10821809--10821892	43	2.0	43	88	4	125	38	8	8	45	1.65
10822920--10822984	28	2.4	28	94	2	114	41	10	0	47	1.38
10823027--10823085	27	2.2	27	84	0	73	30	27	27	15	1.96
10823641--10823697	19	3.1	19	79	5	80	36	12	0	50	1.40
10823953--10824009	19	3.1	19	79	5	80	50	0	12	36	1.40
10825054--10825125	37	1.9	38	91	2	119	37	1	0	61	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10827203--10827241	20	2.0	20	89	0	60	30	10	7	51	1.64
10827346--10827392	18	2.5	19	75	10	51	42	2	0	55	1.12
10834171--10834270	43	2.3	43	78	11	107	36	28	15	21	1.93
10834740--10834807	32	2.1	33	83	10	86	39	0	30	29	1.57
10834853--10834937	39	2.1	41	86	4	120	22	20	18	38	1.93
10836022--10836060	20	2.0	20	90	5	62	28	0	7	64	1.21
10836024--10836067	20	2.2	20	83	0	52	22	2	6	68	1.25
10836064--10836113	10	5.1	10	76	11	50	44	0	4	52	1.20
10836064--10836110	18	2.4	19	82	10	51	42	0	4	53	1.20
10836064--10836111	19	2.5	20	79	3	53	43	0	4	52	1.20
10836544--10836591	13	3.4	14	77	13	53	45	0	0	54	0.99
10839783--10839820	20	1.9	20	88	0	58	68	0	13	18	1.21
10855422--10855455	14	2.5	13	86	9	50	61	0	0	38	0.96
10862715--10862774	30	2.0	31	93	3	104	48	10	8	33	1.67
10865237--10865324	45	2.0	44	80	17	101	31	2	6	59	1.36
10880479--10880537	23	2.4	23	83	8	64	33	1	5	59	1.29
10891283--10891326	3	14.7	3	90	9	72	68	2	0	29	1.02
10891099--10891282	72	2.6	72	99	0	359	41	23	6	27	1.79
10895540--10895871	72	4.6	72	98	0	639	42	24	6	27	1.78
10895872--10895924	3	17.7	3	100	0	106	67	0	0	32	0.91
10896319--10896384	11	6.4	11	75	18	54	37	1	0	60	1.06
10896296--10896384	39	2.2	39	90	9	144	38	1	0	60	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10896358--10896407	11	4.3	12	75	14	52	40	0	0	60	0.97
10896366--10896414	22	2.2	21	82	10	62	34	0	4	61	1.15
10896527--10896589	5	11.6	5	74	15	54	7	50	38	3	1.47
10896619--10896643	11	2.3	11	100	0	50	40	8	0	52	1.31
10896703--10896752	11	4.3	12	75	14	52	40	0	0	60	0.97
10896606--10896741	39	3.3	39	78	17	150	35	2	0	62	1.08
10896711--10896759	22	2.2	21	82	10	62	34	0	4	61	1.15
10899290--10899356	33	2.0	33	97	0	125	34	10	23	31	1.89
10904100--10904166	33	2.0	33	97	0	125	34	10	23	31	1.89
10918091--10918117	2	13.5	2	100	0	54	48	0	0	51	1.00
10919064--10919172	41	2.6	41	95	1	191	22	29	21	26	1.99
10920275--10920311	18	2.1	18	94	0	65	29	5	0	64	1.15
10928033--10928083	3	16.7	3	87	4	66	60	0	5	33	1.21
10929788--10930067	50	5.6	50	72	8	171	20	20	25	33	1.97
10929490--10930527	96	10.6	96	87	6	1193	22	20	24	32	1.98
10942497--10942547	3	16.7	3	87	4	66	60	0	5	33	1.21
10944663--10944738	19	3.9	21	73	11	63	55	3	2	38	1.33
10947886--10947935	18	2.7	18	85	11	66	42	0	2	56	1.11
10947906--10947947	18	2.3	19	87	4	59	47	0	0	52	1.00
10947893--10947979	44	2.0	44	82	11	106	45	2	2	49	1.27
10950925--10950968	12	3.8	12	85	8	56	77	9	0	13	0.99
10950920--10950984	17	3.8	17	76	11	60	76	7	1	13	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10952662--10952714	3	17.7	3	100	0	106	32	0	0	67	0.91
10952794--10952835	4	10.5	4	85	10	59	21	2	2	73	1.06
10959243--10959275	6	5.7	6	89	3	50	84	0	0	15	0.61
10959284--10959326	19	2.2	19	88	12	61	69	6	16	6	1.32
10960962--10961556	87	6.8	87	95	0	1001	29	22	23	24	1.99
10961696--10961838	44	3.2	44	82	3	128	30	16	26	27	1.96
10963110--10963173	31	2.1	31	82	8	78	10	20	12	56	1.66
10963211--10963236	3	8.7	3	100	0	52	30	0	0	69	0.89
10963495--10963542	19	2.3	22	75	24	66	43	8	4	43	1.53
10963503--10963542	19	2.1	19	100	0	80	42	10	5	42	1.60
10963775--10963828	20	2.7	21	76	18	53	25	14	0	59	1.36
10965683--10965715	10	3.3	10	91	8	50	81	0	0	18	0.68
10965646--10965715	15	4.5	15	70	20	54	74	2	1	21	1.03
10965646--10965711	21	3.0	21	73	20	64	74	3	1	21	1.04
10965646--10965718	16	4.3	18	63	19	50	73	2	1	21	1.03
10965859--10965901	16	2.7	16	92	0	77	44	0	53	2	1.13
10967027--10967064	19	2.0	19	85	10	51	42	0	15	42	1.47
10969934--10969963	14	2.1	14	100	0	60	73	0	6	20	1.05
10970918--10970995	23	3.4	23	92	0	129	23	17	20	38	1.93
10970918--10971010	46	2.0	46	85	0	123	22	18	21	37	1.94
10975728--10975804	29	2.6	29	83	8	84	45	12	15	25	1.82
10978265--10978310	14	3.2	14	77	17	58	43	0	54	2	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10990681--10990827	71	2.1	70	83	6	179	31	21	16	30	1.95
10994971--10994995	3	8.3	3	100	0	50	0	0	32	68	0.90
10998456--10998806	47	7.5	47	88	2	483	43	15	12	29	1.83
10999743--10999840	28	3.5	27	79	9	108	28	26	12	32	1.92
11000401--11000554	77	2.0	77	98	0	299	34	27	5	32	1.79
11004038--11004099	31	2.0	31	96	0	115	37	11	9	41	1.74
11018153--11018221	33	2.1	34	86	2	95	28	26	23	21	1.99
11018186--11018243	28	2.1	27	93	3	98	31	25	22	20	1.98
11018353--11018407	26	2.1	26	89	0	83	36	21	20	21	1.95
11018573--11018981	27	15.3	27	81	1	412	22	17	22	37	1.94
11026767--11026811	22	2.0	22	86	0	63	60	2	8	28	1.39
11031188--11031232	22	2.0	22	83	8	56	57	0	8	33	1.30
11032196--11032327	43	3.1	43	84	0	174	23	14	21	40	1.90
11032169--11032450	86	3.3	86	78	1	278	23	17	19	40	1.91
11033005--11033260	136	1.9	136	97	0	485	39	7	12	40	1.70
11043697--11043798	31	3.3	30	70	8	80	41	2	20	35	1.68
11044041--11044107	26	2.7	24	79	9	64	55	11	2	29	1.51
11044923--11044970	17	2.9	16	81	12	62	16	0	29	54	1.43
11044923--11044970	15	2.9	17	81	12	64	16	0	29	54	1.43
11044985--11045035	21	2.5	22	71	12	54	29	1	7	60	1.36
11045062--11045094	15	2.2	15	94	0	57	33	21	6	39	1.78
11046689--11046728	16	2.5	16	87	0	62	15	12	47	25	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11048189--11048252	29	2.2	29	80	2	74	59	1	3	35	1.23
11048229--11048279	21	2.5	20	87	12	68	64	1	5	27	1.27
11048239--11048279	21	1.9	21	95	5	73	65	2	4	26	1.25
11066804--11066860	31	1.9	28	86	10	78	43	1	0	54	1.10
11070320--11070349	15	2.0	15	100	0	60	66	13	6	13	1.43
11077194--11078307	556	2.0	556	100	0	2228	31	15	23	29	1.96
11078889--11078933	19	2.3	21	82	17	62	17	4	0	77	0.92
11084102--11084162	23	2.7	23	81	0	68	18	19	24	37	1.94
11086983--11087062	36	2.2	36	88	2	117	28	7	25	38	1.83
11087469--11087529	26	2.3	26	91	5	97	32	0	22	44	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187