genome.fa.s15.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  128  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38145221--38145267	24	2.0	24	86	0	67	55	10	12	21	1.67
38146838--38146913	36	2.1	36	95	0	134	13	27	1	57	1.44
38146915--38146953	11	3.5	11	80	19	53	61	2	0	35	1.10
38149323--38149361	19	2.1	19	85	9	53	23	0	12	64	1.28
38149774--38149812	19	2.1	19	85	9	53	23	0	12	64	1.28
38149012--38149914	451	2.0	451	99	0	1788	39	6	17	35	1.77
38154320--38154361	11	3.8	11	87	0	57	9	9	9	71	1.32
38156590--38156802	111	1.9	114	83	10	278	23	4	15	57	1.57
38159583--38159675	21	4.4	21	75	4	71	34	24	22	18	1.96
38161066--38161105	20	1.9	20	85	10	53	52	0	2	45	1.14
38161058--38161114	30	2.0	28	86	6	78	52	0	1	45	1.11
38168452--38168527	32	2.4	32	84	0	89	25	36	22	15	1.93
38168645--38168734	3	30.0	3	95	0	162	66	0	32	1	0.99
38170824--38170858	14	2.5	14	95	0	61	34	20	5	40	1.76
38171528--38171579	6	8.7	6	97	0	95	17	34	34	13	1.89
38172058--38172191	48	2.8	48	97	0	250	47	12	8	31	1.71
38183421--38183541	60	2.0	60	96	0	224	33	30	15	19	1.93
38183871--38184011	70	2.0	70	97	0	264	26	9	19	43	1.82
38184739--38184779	20	2.0	21	85	4	57	39	0	4	56	1.21
38184770--38184857	25	3.4	26	80	13	85	27	6	6	59	1.49
38184796--38184857	27	2.3	26	84	13	74	27	4	6	61	1.41
38191956--38192280	88	3.7	87	87	3	463	28	23	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38192295--38192562	131	2.1	128	89	3	403	29	21	25	22	1.99
38192295--38192595	131	2.3	130	84	8	364	30	21	25	22	1.99
38192920--38193013	44	2.1	44	96	0	170	29	25	19	25	1.98
38192920--38193024	44	2.4	44	91	3	158	29	23	21	24	1.99
38194439--38194479	20	2.0	21	85	4	57	39	0	4	56	1.21
38194470--38194557	25	3.4	26	80	13	85	27	6	6	59	1.49
38194496--38194557	27	2.3	26	84	13	74	27	4	6	61	1.41
38198967--38199054	31	2.8	31	79	3	97	38	18	19	23	1.93
38200603--38200662	30	2.0	31	86	3	86	40	0	40	20	1.52
38203528--38204489	47	20.4	47	97	0	1773	25	30	8	35	1.86
38217650--38217688	20	1.9	20	84	5	51	48	10	2	38	1.51
38217608--38217817	72	2.9	73	64	24	156	44	12	5	37	1.66
38217593--38217876	144	2.0	145	89	4	441	44	12	5	38	1.66
38220460--38220516	22	2.6	22	76	15	55	52	5	3	38	1.41
38221964--38221997	12	2.9	12	86	4	52	32	0	0	67	0.91
38225141--38225171	13	2.4	13	100	0	62	16	12	9	61	1.56
38226535--38227005	42	11.3	42	87	0	658	37	23	18	20	1.94
38226530--38227005	167	2.8	168	87	2	688	37	23	17	21	1.94
38226535--38227005	125	3.8	126	87	1	642	37	23	18	20	1.94
38231976--38232002	4	6.8	4	100	0	54	25	0	25	48	1.52
38234302--38234342	18	2.3	18	91	0	64	29	19	17	34	1.94
38235725--38235789	27	2.4	26	82	12	78	40	9	10	40	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38235735--38235789	27	2.0	27	92	0	92	41	10	9	38	1.72
38236679--38236974	146	2.0	145	89	3	454	42	10	6	40	1.65
38236888--38237065	91	2.0	91	92	1	295	43	8	6	41	1.61
38249904--38250047	37	3.9	37	98	0	270	36	16	21	25	1.94
38249904--38250064	74	2.2	74	92	2	272	36	15	23	24	1.94
38254504--38254546	23	2.0	21	86	9	59	0	32	0	67	0.91
38260168--38260276	54	2.0	54	96	0	200	24	18	14	42	1.88
38268982--38269030	18	2.6	19	80	6	55	30	2	0	67	1.02
38281951--38282006	26	2.2	26	87	6	78	62	1	1	33	1.16
38285372--38285408	18	2.1	18	89	0	56	40	5	27	27	1.78
38288171--38288433	131	2.0	131	96	0	490	40	12	17	30	1.86
38289032--38289069	17	2.2	17	86	9	51	76	2	2	18	1.02
38289033--38289073	22	1.9	21	90	5	64	78	2	2	17	0.98
38291178--38291235	18	3.5	17	79	11	59	37	6	6	48	1.57
38291206--38291234	14	2.0	15	93	6	51	41	3	6	48	1.47
38294355--38294385	15	2.1	15	93	0	53	54	9	12	22	1.67
38295524--38295575	24	2.1	25	82	10	63	55	5	13	25	1.60
38298861--38298927	25	2.7	25	86	2	82	20	26	17	34	1.96
38304434--38304477	13	3.5	13	82	14	56	68	6	0	25	1.14
38306296--38306452	78	2.0	78	86	0	215	31	24	17	26	1.97
38306596--38306663	34	2.0	34	100	0	136	29	17	23	29	1.97
38306607--38306679	34	2.1	34	85	5	94	30	17	21	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38308207--38308241	18	2.0	17	88	5	52	45	0	0	54	0.99
38308474--38308512	16	2.4	16	86	0	51	28	33	2	35	1.71
38308487--38308543	16	3.6	16	95	0	87	33	36	0	29	1.58
38308561--38309010	158	2.9	158	96	0	803	36	13	9	40	1.77
38310272--38310370	52	1.9	52	85	4	137	34	19	20	26	1.96
38310606--38310674	34	2.0	34	100	0	138	5	23	11	59	1.53
38310615--38310677	16	3.8	16	72	15	65	3	23	6	66	1.29
38310673--38310721	25	1.9	26	83	4	64	16	10	10	63	1.52
38313567--38313610	25	1.9	24	82	17	58	45	4	9	40	1.56
38315394--38315447	28	1.9	28	85	14	76	57	5	0	37	1.22
38315213--38315671	223	2.0	224	98	0	884	41	6	7	44	1.59
38315617--38315670	28	1.9	28	85	14	76	57	5	0	37	1.22
38315682--38315715	11	3.3	11	88	12	54	50	0	0	50	1.00
38315658--38315725	20	3.3	19	73	15	64	52	0	4	42	1.21
38318772--38318842	29	2.4	31	77	11	78	73	0	19	7	1.06
38319635--38319730	43	2.2	44	81	7	117	33	20	19	26	1.97
38338190--38338218	9	3.2	9	100	0	58	68	0	0	31	0.89
38339632--38339657	12	2.2	12	100	0	52	73	15	0	11	1.11
38339666--38339696	13	2.4	13	94	0	53	41	12	0	45	1.42
38340317--38340542	78	3.0	75	82	8	262	42	3	34	19	1.69
38343278--38343316	17	2.2	19	86	9	55	30	0	28	41	1.57
38343674--38343901	46	5.0	45	78	4	206	30	19	20	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38345887--38346018	51	2.6	50	82	7	142	35	28	15	21	1.93
38345889--38346073	101	1.8	101	83	3	246	31	26	18	23	1.97
38349784--38349990	112	1.8	112	88	0	315	34	14	17	32	1.91
38355004--38355200	102	1.9	102	98	0	385	33	17	14	34	1.90
38355651--38355800	76	2.0	76	97	0	282	26	10	29	34	1.89
38360044--38360075	12	2.7	12	95	0	55	43	12	34	9	1.75
38365092--38365422	27	12.3	27	84	5	377	44	19	15	21	1.86
38365092--38365422	108	3.1	108	85	4	427	44	19	15	21	1.86
38366323--38366365	20	2.2	20	100	0	86	46	13	16	23	1.83
38371196--38371245	24	2.1	24	100	0	100	20	12	26	42	1.86
38375779--38376470	348	2.0	345	97	1	1323	35	14	19	30	1.92
38379368--38379404	19	1.9	19	88	0	56	18	16	27	37	1.92
38382113--38382138	9	2.9	9	100	0	52	65	0	0	34	0.93
38384818--38385074	129	2.0	129	96	0	469	28	17	28	26	1.97
38385609--38385875	98	2.7	98	98	1	509	28	8	24	38	1.85
38397272--38397785	44	11.8	43	69	14	222	28	20	23	27	1.99
38397265--38397782	217	2.4	217	88	1	752	28	20	23	27	1.99
38397541--38397746	84	2.4	88	79	10	210	27	20	25	26	1.99
38397623--38397787	89	1.9	89	83	5	217	27	21	24	26	1.99
38399963--38400168	98	2.1	98	95	2	369	29	9	22	38	1.86
38404545--38404759	105	2.0	104	80	5	236	25	25	22	26	2.00
38408587--38408649	30	2.1	30	93	0	108	22	3	17	57	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38410222--38410283	21	3.0	20	79	9	63	29	4	6	59	1.43
38418599--38418630	16	1.9	17	93	6	57	53	0	18	28	1.45
38418886--38418944	30	2.0	31	83	6	77	42	0	33	23	1.55
38424244--38424293	24	2.0	27	84	11	70	44	0	4	52	1.20
38425046--38425099	27	2.0	27	89	7	83	18	20	18	42	1.89
38431231--38431282	19	2.9	17	81	10	59	38	11	17	32	1.85
38431241--38431284	19	2.1	22	88	12	67	38	9	18	34	1.82
38436838--38436880	11	4.0	10	82	11	50	81	2	16	0	0.79
38436835--38436877	15	2.9	14	90	10	68	83	2	13	0	0.74
38438120--38439005	88	10.2	88	86	5	1038	24	23	26	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187