genome.fa.s15.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  114  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33550947--33551042	19	5.2	17	77	13	86	34	1	5	59	1.27
33553824--33553933	35	3.2	35	77	7	111	30	26	20	21	1.98
33557123--33557277	33	4.7	33	90	0	240	20	29	36	13	1.91
33565367--33565589	40	5.6	39	84	4	225	26	28	20	24	1.99
33565367--33565589	120	1.9	119	81	6	272	26	28	20	24	1.99
33574973--33575235	40	6.6	39	86	4	278	25	27	21	25	1.99
33574973--33575235	120	2.2	119	82	4	307	25	27	21	25	1.99
33575167--33575244	40	1.9	41	82	10	97	26	28	20	24	1.99
33584282--33584326	18	2.5	18	92	0	72	2	22	0	75	0.91
33584932--33585072	63	2.2	63	87	2	194	21	24	25	27	2.00
33588605--33588647	20	2.2	20	82	0	50	48	0	2	48	1.14
33590833--33590907	19	3.9	19	75	13	64	66	2	0	30	1.05
33590833--33590952	9	13.0	9	72	11	82	65	2	1	30	1.16
33590849--33590946	36	2.6	36	82	4	115	63	2	2	32	1.17
33590867--33590956	17	5.1	17	75	11	74	62	1	2	34	1.15
33600226--33600294	36	1.9	36	93	0	120	15	11	34	37	1.84
33605660--33605701	14	3.1	14	89	3	68	47	0	14	38	1.44
33605661--33605704	13	3.3	13	84	6	61	50	0	15	34	1.45
33617760--33617799	11	3.4	11	89	10	53	55	10	7	27	1.60
33617765--33617822	14	4.3	14	85	10	68	62	6	12	18	1.52
33619911--33619948	19	2.0	19	90	10	60	68	0	2	28	1.03
33623159--33623207	24	2.0	24	84	7	64	53	4	28	14	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33627478--33627511	17	2.1	17	88	5	52	23	26	17	32	1.97
33627614--33627681	3	22.7	3	96	0	127	67	0	32	0	0.91
33633180--33633242	20	3.2	20	77	8	74	46	23	22	7	1.78
33635159--33635192	15	2.4	14	90	5	50	17	2	2	76	1.04
33635859--33635950	46	2.0	45	91	2	148	36	30	11	19	1.88
33645452--33645478	14	1.9	14	100	0	54	33	7	0	59	1.25
33645638--33645678	18	2.3	18	84	12	57	17	4	14	63	1.47
33648509--33648564	30	1.9	28	86	13	78	14	46	25	14	1.82
33649723--33649945	49	4.7	49	70	11	183	22	29	18	29	1.97
33649677--33649888	93	2.2	95	79	9	229	26	28	18	25	1.98
33651895--33652132	28	8.5	28	94	0	388	32	28	13	26	1.94
33661073--33661198	50	2.5	50	96	0	225	26	25	11	36	1.90
33666343--33666498	48	3.2	47	66	13	111	34	8	0	56	1.34
33669069--33670303	490	2.5	490	97	0	2274	31	11	25	30	1.91
33671603--33671812	40	5.3	40	88	1	269	23	21	30	24	1.99
33671603--33671847	80	3.1	80	82	2	217	24	21	30	24	1.99
33674442--33674619	27	6.6	27	82	3	196	26	15	28	29	1.96
33674443--33674598	82	1.9	81	86	3	224	26	16	28	28	1.97
33674439--33674619	82	2.2	81	82	2	220	27	16	27	29	1.97
33677639--33677672	15	2.3	15	100	0	68	11	11	50	26	1.73
33683951--33683980	11	2.6	12	94	5	53	60	3	0	36	1.14
33685007--33685057	24	2.1	25	88	3	77	5	1	37	54	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33685529--33685735	44	4.8	43	70	7	132	28	20	19	30	1.97
33685576--33685735	85	1.9	85	80	5	189	29	21	20	29	1.98
33685445--33685735	129	2.3	128	85	1	386	27	20	20	31	1.97
33685740--33686418	142	4.8	142	93	0	1130	29	20	16	33	1.94
33686321--33686523	105	1.9	105	91	2	336	29	22	14	33	1.94
33686179--33686652	247	2.0	234	86	7	655	29	20	16	33	1.95
33686418--33688614	129	17.0	129	96	0	3820	28	21	17	31	1.96
33689854--33689892	7	5.7	7	87	6	62	15	17	0	66	1.25
33689854--33689891	13	2.8	13	92	4	58	15	18	0	65	1.27
33690853--33690921	22	3.0	23	70	12	61	8	8	7	75	1.19
33692595--33692774	91	2.0	91	95	0	324	22	24	15	37	1.92
33694812--33694841	11	2.6	12	94	5	53	60	3	0	36	1.14
33694812--33694861	23	2.2	23	82	7	57	60	2	0	38	1.09
33695863--33695913	24	2.1	25	92	3	86	5	3	35	54	1.43
33696229--33696380	51	2.9	52	83	3	207	27	24	14	33	1.94
33696160--33696371	54	4.0	54	76	4	234	26	24	14	34	1.94
33700389--33700433	23	2.0	23	95	0	81	24	20	26	28	1.99
33701146--33701185	20	2.0	20	90	0	62	27	10	12	50	1.72
33705103--33705143	20	2.0	22	85	9	59	48	4	19	26	1.69
33706347--33706454	30	3.6	30	87	0	144	40	25	13	20	1.89
33706465--33706537	30	2.4	30	88	0	101	41	27	12	19	1.87
33706389--33706539	76	2.0	76	97	0	284	39	26	12	21	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33706558--33706701	61	2.4	61	84	0	189	37	26	15	20	1.93
33706598--33706731	61	2.2	61	82	2	153	41	25	11	21	1.87
33708560--33708616	25	2.3	25	87	0	87	33	22	17	26	1.96
33717955--33718058	54	1.9	54	98	0	199	25	25	16	33	1.96
33729391--33729434	17	2.8	16	83	10	63	22	13	2	61	1.43
33729394--33729434	16	2.6	16	85	11	57	21	12	2	63	1.40
33734567--33734639	29	2.5	29	95	0	128	45	13	9	31	1.76
33735727--33735800	28	2.6	28	93	0	121	24	28	25	21	1.99
33735892--33735942	26	2.0	26	88	0	75	39	19	21	19	1.93
33736105--33736458	27	13.1	26	82	7	284	16	18	20	44	1.87
33736105--33736458	54	6.5	53	84	7	356	16	18	20	44	1.87
33736105--33736458	81	4.4	81	86	2	419	16	18	20	44	1.87
33741860--33741886	13	2.1	13	100	0	54	29	0	7	62	1.22
33741985--33742219	50	4.7	49	81	2	245	28	20	29	21	1.98
33741985--33742219	99	2.3	100	81	5	269	28	20	29	21	1.98
33745613--33745659	19	2.5	19	100	0	94	57	4	6	31	1.43
33746900--33746945	18	2.5	19	96	3	85	56	4	6	32	1.45
33750627--33750669	21	2.0	21	90	0	68	32	4	37	25	1.77
33750616--33750666	21	2.7	18	72	21	50	27	3	37	31	1.75
33750624--33750676	21	2.5	21	81	3	61	35	3	33	26	1.75
33768334--33768359	12	2.2	12	100	0	52	46	15	7	30	1.74
33772339--33772391	23	2.3	23	93	0	97	32	26	20	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33775000--33775125	49	2.6	47	81	5	146	30	25	15	28	1.96
33778791--33778942	27	5.6	27	83	4	189	27	15	27	28	1.96
33778792--33778942	82	1.9	81	88	4	232	27	15	27	29	1.96
33778791--33778945	55	2.9	54	83	3	195	27	15	27	29	1.96
33780025--33780106	38	2.2	37	80	8	94	30	20	1	47	1.58
33780415--33780611	99	2.0	99	96	0	367	34	21	11	32	1.89
33782162--33782204	18	2.4	18	84	7	61	62	9	4	23	1.44
33812013--33812044	16	2.1	16	88	11	50	31	6	12	50	1.65
33813863--33813899	17	2.3	17	86	9	51	24	0	8	67	1.17
33825970--33826018	3	16.3	3	100	0	98	67	0	0	32	0.91
33826816--33826849	17	2.0	17	94	0	59	35	2	20	41	1.68
33830325--33830643	148	2.2	148	83	2	381	25	28	14	31	1.95
33832380--33832716	60	5.6	60	80	2	329	28	24	13	32	1.94
33832400--33832716	120	2.6	120	83	0	373	28	24	14	32	1.94
33832842--33832991	50	2.9	51	80	9	162	30	21	13	35	1.91
33835661--33835734	36	2.0	37	82	7	89	48	2	1	47	1.24
33838908--33838936	14	2.0	15	93	6	51	0	44	0	55	0.99
33839250--33839856	185	3.3	183	88	4	891	42	7	25	24	1.81
33843003--33843260	119	2.2	120	85	6	337	25	26	22	25	2.00
33842984--33843267	40	7.1	40	86	5	353	24	27	22	25	2.00
33852434--33852832	47	8.4	47	94	1	645	32	8	29	29	1.86
33854862--33854903	21	2.0	20	86	4	57	30	23	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33856045--33856207	74	2.2	74	91	0	254	39	32	11	16	1.85
33856042--33856169	37	3.5	37	76	4	150	39	32	11	17	1.85
33856042--33856196	37	4.2	36	76	4	139	38	31	12	18	1.87
33861845--33861903	24	2.5	24	82	0	73	20	0	18	61	1.35
33864413--33864469	30	1.9	30	85	7	80	43	10	29	15	1.80
33872897--33872933	18	2.1	18	89	0	56	54	5	0	40	1.24
33876488--33876521	5	6.8	5	93	0	59	38	0	20	41	1.53
33878799--33878956	46	3.4	46	77	7	149	28	23	11	36	1.89
33884594--33884618	11	2.3	11	100	0	50	36	0	0	64	0.94
33885223--33885300	30	2.6	30	77	6	77	25	10	23	41	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187