genome.fa.s15.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  168  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51097892--51097980	46	1.9	45	81	6	106	22	0	28	49	1.50
51098068--51098099	16	2.0	16	100	0	64	37	0	25	37	1.56
51098058--51098127	19	3.8	19	81	11	83	37	1	18	42	1.59
51098662--51098916	126	2.0	126	88	0	375	36	16	16	30	1.91
51101338--51101509	40	4.3	40	87	2	213	25	28	21	24	1.99
51101338--51101562	80	2.8	79	80	7	231	25	28	21	24	1.99
51101494--51101571	40	1.9	41	82	10	97	26	28	20	24	1.99
51108844--51108889	19	2.4	19	89	7	67	21	19	15	43	1.87
51109563--51109592	15	2.0	15	93	0	51	43	20	10	26	1.83
51115773--51115813	18	2.3	18	91	0	64	41	7	29	21	1.80
51115981--51116020	20	2.0	20	90	0	62	32	17	17	32	1.93
51117446--51117580	48	2.8	47	82	6	146	52	5	8	32	1.57
51117682--51117714	17	2.1	16	88	11	50	75	6	0	18	1.00
51123867--51123910	19	2.3	19	100	0	88	36	13	13	36	1.85
51129019--51129121	50	2.1	50	94	0	179	35	19	10	33	1.86
51130563--51130822	129	2.0	129	89	1	396	30	13	12	43	1.81
51133856--51133926	30	2.4	29	80	2	79	32	21	21	25	1.98
51139080--51139120	5	7.8	5	89	10	64	80	0	0	19	0.71
51139138--51139181	22	2.0	22	95	0	79	22	11	18	47	1.80
51141850--51141890	17	2.3	18	83	4	57	78	0	7	14	0.96
51145624--51145701	29	2.7	28	84	11	104	25	15	30	28	1.96
51145654--51145981	174	1.9	174	97	0	620	30	14	24	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51149172--51149265	47	2.0	47	85	0	125	37	15	14	31	1.89
51152839--51152910	29	2.5	29	81	0	81	41	19	12	26	1.87
51154561--51154630	21	3.2	21	64	18	52	21	14	25	38	1.91
51154553--51154643	45	2.0	45	93	0	155	23	14	25	37	1.92
51161210--51161295	45	1.9	45	90	0	136	27	15	23	33	1.94
51168937--51169315	47	8.1	47	91	0	544	34	10	28	26	1.89
51169289--51169379	46	2.0	46	88	0	137	34	6	30	28	1.83
51188628--51188763	65	2.1	67	85	2	186	13	28	14	43	1.83
51190527--51190562	5	7.2	5	87	0	54	41	19	0	38	1.52
51193510--51193534	13	1.9	13	100	0	50	32	16	16	36	1.90
51195385--51195585	47	4.3	47	95	0	366	33	7	29	29	1.85
51199856--51200031	46	3.8	46	77	7	185	23	21	26	28	1.99
51199852--51200023	93	1.8	93	89	0	272	23	22	27	27	1.99
51220502--51220605	54	1.9	54	84	3	138	18	32	19	29	1.95
51222237--51222276	20	2.1	19	85	4	53	30	15	0	55	1.41
51226439--51226489	26	1.9	27	92	4	86	31	17	17	33	1.94
51226539--51226569	16	1.9	16	100	0	62	35	25	12	25	1.92
51228603--51228827	40	5.7	40	87	5	305	24	22	27	25	2.00
51228603--51228860	119	2.2	119	81	6	292	25	21	27	25	1.99
51236596--51236818	39	5.7	40	86	7	273	25	22	27	24	2.00
51236596--51236818	79	2.8	81	85	8	282	25	22	27	24	2.00
51236596--51236851	79	3.3	79	82	9	224	26	21	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51238694--51238726	17	1.9	17	100	0	66	42	6	12	39	1.67
51238807--51238978	43	4.0	43	78	11	167	30	28	16	24	1.97
51245984--51246174	50	3.8	50	83	0	220	28	20	28	22	1.98
51251577--51251606	15	2.1	15	93	6	53	76	0	20	3	0.92
51259115--51259278	43	3.8	43	75	12	140	32	25	16	26	1.96
51261320--51261364	20	2.2	20	96	4	81	28	17	8	44	1.79
51261432--51261496	27	2.4	27	84	0	85	38	21	12	27	1.89
51267820--51267875	15	3.7	15	73	19	53	16	23	0	60	1.35
51267792--51267870	32	2.5	32	87	4	106	12	25	1	60	1.40
51285171--51285200	14	2.1	15	93	6	53	43	30	6	20	1.77
51296100--51296178	27	2.9	28	69	10	65	25	22	10	41	1.85
51296331--51296534	45	4.5	45	86	0	282	22	21	12	43	1.86
51300511--51300563	16	3.3	16	81	0	61	58	1	22	16	1.48
51304537--51304568	13	2.5	13	94	0	55	28	6	37	28	1.81
51306129--51306195	34	2.0	34	84	0	89	31	4	20	43	1.72
51310619--51310687	27	2.6	27	81	9	86	40	11	24	23	1.88
51310619--51310698	27	3.0	25	77	14	79	36	11	26	26	1.90
51310680--51310747	27	2.5	27	78	0	73	38	14	23	23	1.92
51316140--51316166	13	2.1	13	100	0	54	29	0	7	62	1.22
51316268--51316486	50	4.4	50	88	0	285	27	21	28	21	1.99
51317013--51317057	22	2.1	21	91	4	72	13	15	26	44	1.83
51317178--51317279	42	2.5	42	87	7	154	25	19	18	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51317606--51317676	21	3.4	20	84	7	88	4	45	18	32	1.69
51320396--51320698	9	35.0	9	67	20	134	33	0	18	46	1.56
51320389--51320443	23	2.4	24	85	11	80	43	0	14	41	1.45
51320435--51320579	34	4.0	34	75	18	130	31	0	19	48	1.54
51320455--51320625	77	2.2	77	92	0	288	32	1	18	46	1.59
51320585--51320668	34	2.3	38	78	15	99	36	0	15	47	1.46
51320400--51320698	16	18.9	16	64	25	93	33	1	18	47	1.56
51322073--51322124	14	3.4	14	76	23	59	36	19	13	30	1.90
51322564--51322846	148	1.9	148	83	2	372	36	22	18	23	1.95
51323311--51323379	8	9.2	8	76	14	60	43	34	1	20	1.61
51323311--51323386	14	5.1	15	74	12	59	43	32	1	22	1.62
51323311--51323379	15	4.7	15	77	13	72	43	34	1	20	1.61
51323446--51323488	14	3.2	13	78	12	50	44	34	2	18	1.63
51323786--51323834	14	3.4	14	80	2	53	40	44	0	14	1.45
51323996--51324042	20	2.3	20	81	3	58	46	29	4	19	1.68
51324206--51325072	115	7.6	114	77	9	767	27	22	18	30	1.97
51324206--51325071	229	3.8	229	78	7	859	27	22	18	30	1.97
51334644--51334679	17	2.1	17	89	5	54	19	2	11	66	1.35
51334770--51334859	47	1.9	47	95	0	162	38	5	7	47	1.56
51335254--51335299	18	2.6	18	86	3	58	43	0	2	54	1.12
51335533--51335572	16	2.5	16	95	0	71	27	27	7	37	1.84
51335814--51335925	40	2.8	39	82	6	118	41	6	5	47	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51337153--51337193	21	2.0	21	85	0	55	56	2	2	39	1.26
51337510--51337569	30	2.0	30	84	9	79	53	5	3	38	1.39
51342964--51343012	19	2.5	19	80	12	64	53	4	0	42	1.20
51343150--51343211	29	2.1	29	96	0	115	54	6	17	20	1.65
51344090--51344130	17	2.4	18	84	12	59	29	19	14	36	1.92
51344282--51344340	27	2.2	26	84	3	73	25	32	15	27	1.95
51345820--51345877	30	1.9	30	85	0	80	41	5	25	27	1.76
51346268--51346407	50	2.8	50	82	0	154	27	22	27	22	1.99
51350080--51350126	23	2.0	23	83	0	58	65	4	0	29	1.11
51350152--51350178	2	13.5	2	100	0	54	51	48	0	0	1.00
51351897--51351933	18	2.1	17	90	5	56	45	0	0	54	1.00
51352165--51352234	16	4.4	16	92	0	95	32	34	0	32	1.58
51353104--51353150	24	2.0	24	86	0	67	46	17	8	27	1.76
51353191--51353256	27	2.5	26	83	11	80	21	22	18	37	1.94
51356077--51356133	25	2.3	26	81	9	73	21	17	19	42	1.90
51356992--51357059	34	2.0	35	97	2	129	8	1	29	60	1.36
51358015--51358348	137	2.4	138	88	1	485	39	9	7	44	1.64
51361447--51361475	8	3.8	8	90	9	51	24	48	0	27	1.51
51367432--51367500	23	3.1	22	66	19	54	53	10	18	17	1.71
51367417--51367500	43	2.0	43	90	0	132	52	10	17	19	1.73
51371440--51371496	23	2.4	25	80	14	66	26	5	12	56	1.57
51373634--51373671	19	2.0	19	85	10	51	21	39	0	39	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51375026--51375172	64	2.3	65	79	3	163	28	5	29	36	1.79
51395575--51395601	5	5.4	5	100	0	54	0	0	18	81	0.69
51396826--51396913	27	3.3	27	85	3	97	43	19	17	20	1.88
51396849--51397005	54	2.9	53	83	5	147	36	22	19	21	1.95
51396876--51397005	27	4.8	27	90	0	179	34	23	20	21	1.96
51397025--51397096	24	3.0	23	88	6	99	20	8	23	47	1.77
51397159--51397223	27	2.4	27	78	14	73	24	24	16	33	1.96
51397212--51397271	26	2.3	26	85	0	75	20	20	23	36	1.95
51397225--51397277	26	2.0	26	88	0	79	15	20	30	33	1.93
51397268--51397470	32	6.4	32	82	2	230	20	22	20	37	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187