genome.fa.s15.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  169  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51397265--51397470	64	3.2	64	84	2	254	19	22	20	37	1.94
51397268--51397478	96	2.2	95	88	1	307	20	22	20	36	1.95
51407841--51407928	40	2.2	40	79	2	97	26	28	22	22	1.99
51407864--51408008	40	3.6	40	82	4	175	23	24	24	26	2.00
51409340--51409466	63	2.0	63	98	0	245	22	18	10	48	1.79
51412557--51412604	19	2.6	18	76	3	51	37	20	6	35	1.78
51412721--51412801	39	2.1	39	92	0	135	46	12	9	30	1.74
51417802--51417892	27	3.3	27	82	4	92	26	29	14	29	1.95
51423859--51423935	34	2.3	35	84	8	106	23	22	22	32	1.98
51434711--51435219	47	10.6	47	89	5	748	31	8	31	29	1.86
51434711--51435168	246	1.9	247	95	0	828	31	7	30	30	1.85
51435340--51435415	37	2.1	37	89	0	116	22	18	32	26	1.97
51445770--51445944	46	3.8	45	78	11	176	29	28	20	21	1.98
51445777--51445948	93	1.8	93	91	0	281	29	28	20	22	1.98
51449346--51449611	27	10.0	27	72	8	170	32	12	23	32	1.91
51449346--51449566	53	4.2	53	78	5	205	33	12	23	30	1.92
51449346--51449611	80	3.3	79	80	4	230	32	12	23	32	1.91
51449365--51449602	53	4.5	53	76	9	180	32	12	23	31	1.91
51449365--51449602	106	2.2	106	81	9	288	32	12	23	31	1.91
51456785--51456962	27	6.6	27	83	3	205	26	15	28	29	1.96
51456786--51456941	82	1.9	81	88	3	233	26	15	28	29	1.96
51456782--51456962	82	2.2	81	83	2	229	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51464454--51464630	27	6.5	27	83	3	203	27	15	27	29	1.96
51464455--51464610	82	1.9	81	88	3	233	26	15	28	29	1.96
51464451--51464630	82	2.2	81	83	3	227	27	15	27	30	1.96
51472268--51472377	42	2.6	42	80	5	123	30	16	25	27	1.96
51473473--51473526	20	2.7	20	85	0	81	22	31	29	16	1.96
51477127--51477154	13	2.2	13	100	0	56	53	14	25	7	1.66
51485186--51485233	24	2.0	24	100	0	96	41	16	12	29	1.85
51486792--51487024	112	2.1	111	86	0	313	31	16	15	36	1.89
51488375--51488399	13	1.9	13	100	0	50	60	0	0	40	0.97
51488552--51488610	29	2.0	29	100	0	118	42	13	6	37	1.71
51489724--51489869	63	2.3	64	83	4	181	35	28	15	19	1.93
51489762--51489809	24	2.0	24	87	0	69	35	29	12	22	1.91
51491061--51491086	13	2.0	13	100	0	52	53	0	0	46	1.00
51493006--51493229	40	5.6	40	86	8	294	25	26	23	24	2.00
51493006--51493229	83	2.8	81	86	8	289	25	26	23	24	2.00
51516807--51516990	79	2.3	81	82	8	216	24	21	27	26	1.99
51516806--51517015	40	5.3	40	78	9	198	25	20	27	26	1.99
51516842--51517015	79	2.2	78	81	11	203	26	21	26	25	1.99
51519101--51519140	20	2.0	20	90	0	62	22	2	2	72	1.09
51519114--51519187	20	3.5	20	73	22	62	27	0	2	70	1.01
51521112--51521136	2	12.5	2	100	0	50	0	48	0	52	1.00
51523417--51523475	30	2.0	30	83	6	75	23	28	25	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51527020--51527052	15	2.2	15	100	0	66	30	0	0	69	0.88
51527020--51527060	15	2.9	15	89	7	50	31	0	0	68	0.90
51527311--51527350	20	2.0	20	90	4	64	40	25	7	27	1.82
51530288--51530315	6	4.7	6	100	0	56	85	0	0	14	0.59
51530438--51530516	19	4.2	19	88	9	117	39	8	16	35	1.80
51532588--51532640	14	3.7	14	79	20	65	24	22	9	43	1.83
51533036--51533088	14	3.7	14	77	20	56	22	20	13	43	1.86
51534669--51534708	21	1.9	21	85	10	55	52	2	0	45	1.14
51539614--51539741	1	128.0	1	69	0	76	84	0	11	3	0.78
51539614--51539741	14	9.5	13	81	9	127	84	0	11	3	0.78
51539614--51539739	44	2.9	43	86	8	159	84	0	11	3	0.79
51539614--51539720	7	15.6	7	87	8	150	85	0	12	1	0.74
51540637--51541840	88	13.7	87	69	12	444	30	16	24	28	1.97
51540632--51541870	132	9.4	132	93	0	1930	31	16	24	28	1.96
51542494--51542591	19	5.2	19	90	7	155	38	9	16	35	1.80
51542484--51542591	36	2.9	35	78	10	117	39	9	14	36	1.79
51542876--51542933	28	2.1	28	100	0	116	25	13	3	56	1.53
51542876--51542953	28	2.8	28	88	3	77	28	10	3	57	1.49
51544821--51544979	43	3.7	43	69	12	121	29	24	19	26	1.98
51552382--51552527	43	3.4	42	79	8	145	30	24	18	26	1.98
51552382--51552527	42	3.4	44	73	13	133	30	24	18	26	1.98
51555236--51555280	20	2.2	20	88	0	63	51	2	11	35	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51557154--51557209	21	2.7	21	88	0	85	17	26	33	21	1.96
51564275--51564358	25	3.2	25	73	16	73	66	1	0	32	0.99
51564293--51564350	24	2.2	25	88	11	82	68	1	0	29	0.99
51564320--51564377	17	3.5	16	73	4	53	70	0	1	27	0.97
51564344--51564401	25	2.3	24	80	11	62	70	3	1	24	1.12
51564327--51564385	17	3.4	17	75	15	57	67	1	1	28	1.10
51569003--51569086	25	3.2	25	73	16	73	66	1	0	32	0.99
51569021--51569078	24	2.2	25	88	11	82	68	1	0	29	0.99
51569048--51569105	17	3.5	16	73	4	53	70	0	1	27	0.97
51569072--51569129	25	2.3	24	80	11	62	70	3	1	24	1.12
51569055--51569113	17	3.4	17	75	15	57	67	1	1	28	1.10
51580372--51580401	15	2.0	15	93	0	51	23	13	6	56	1.60
51588985--51589083	33	3.0	33	93	0	171	31	41	10	17	1.82
51589984--51590033	25	2.0	25	100	0	100	32	20	24	24	1.98
51594103--51594158	26	2.2	26	96	0	103	30	7	25	37	1.82
51601104--51601198	46	2.1	46	85	0	127	30	22	23	24	1.99
51601704--51601780	27	2.9	27	86	0	100	33	19	20	25	1.96
51602026--51602101	22	3.5	22	88	0	116	13	28	26	31	1.93
51604584--51604633	23	2.2	23	89	7	75	10	26	22	42	1.84
51609131--51609160	14	2.1	15	93	6	53	53	6	3	36	1.44
51619359--51619583	40	5.6	40	81	7	251	25	24	26	23	2.00
51619359--51619619	80	3.3	79	84	2	310	25	24	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51619359--51619619	120	2.2	120	83	6	325	25	24	26	24	2.00
51621218--51621269	23	2.3	23	86	6	70	9	15	3	71	1.27
51632055--51632094	21	1.9	21	84	0	53	35	2	25	37	1.69
51633357--51633549	40	4.8	40	89	1	264	25	20	27	25	1.99
51638968--51638997	15	2.0	15	93	0	51	56	13	0	30	1.37
51642490--51642752	40	6.6	40	87	3	309	26	28	20	23	1.99
51650436--51650700	40	6.7	40	85	5	286	26	27	21	24	1.99
51650403--51650700	80	3.7	80	79	9	263	25	27	21	25	1.99
51650632--51650709	40	1.9	41	82	10	97	26	28	20	24	1.99
51655613--51655726	29	4.0	28	81	8	131	28	29	14	27	1.96
51655604--51655713	58	1.9	58	84	1	150	26	30	15	27	1.96
51660772--51660823	23	2.3	22	75	15	52	44	13	15	26	1.84
51661040--51661068	14	2.0	15	93	6	51	55	13	13	17	1.70
51663088--51663129	17	2.4	18	84	8	59	21	28	0	50	1.49
51666633--51666665	12	2.5	14	90	9	52	63	0	21	15	1.30
51666586--51666718	63	2.1	64	86	8	182	47	6	21	24	1.73
51666694--51666719	13	2.0	13	100	0	52	69	0	15	15	1.20
51672258--51672335	41	1.9	40	86	2	111	47	5	16	30	1.68
51672309--51672345	13	2.9	12	88	11	56	67	0	13	18	1.23
51672309--51672345	6	5.8	6	90	6	56	67	0	13	18	1.23
51675154--51675287	46	2.9	47	78	15	152	28	28	20	22	1.99
51675163--51675306	46	3.1	46	69	22	120	29	28	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51683438--51683501	24	2.6	25	87	4	87	32	31	15	20	1.94
51683525--51683574	24	2.1	24	88	0	73	32	30	12	26	1.92
51683530--51683905	94	4.0	94	98	0	716	39	19	10	30	1.86
51690285--51690477	39	5.0	39	89	0	271	27	19	27	25	1.99
51693659--51693732	37	2.0	37	100	0	148	21	10	27	40	1.86
51698164--51698318	42	3.7	42	79	5	152	34	14	20	30	1.92
51701947--51701993	23	2.0	23	91	0	76	34	12	17	36	1.87
51708971--51709024	27	2.0	27	92	0	90	48	5	16	29	1.69
51715437--51715478	22	2.0	22	86	13	63	54	0	0	45	0.99
51715440--51715473	16	2.2	15	89	5	50	55	0	0	44	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187