genome.fa.s15.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  160  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48514972--48515016	3	15.0	3	100	0	90	33	66	0	0	0.92
48517375--48517404	11	2.7	11	100	0	60	30	53	0	16	1.44
48521015--48521070	29	1.9	29	85	0	76	50	0	0	50	1.00
48521946--48522006	17	3.8	17	72	10	56	36	4	1	57	1.30
48529792--48529849	22	2.7	22	84	12	68	65	0	6	27	1.18
48529783--48529830	14	3.4	14	77	8	53	62	0	4	33	1.14
48529879--48529916	9	4.5	8	90	9	58	73	0	26	0	0.83
48529879--48529916	4	9.0	4	88	11	58	73	0	26	0	0.83
48529879--48529916	13	3.0	12	88	11	58	73	0	26	0	0.83
48534382--48534493	39	2.8	39	84	1	134	14	16	29	40	1.87
48534375--48534503	40	3.2	40	83	2	152	13	16	30	40	1.86
48541930--48542061	69	1.9	69	83	6	169	21	16	25	37	1.94
48541933--48542072	23	6.1	23	73	8	88	20	16	25	37	1.93
48543751--48543806	27	2.1	27	86	6	78	32	16	17	33	1.92
48543939--48544058	34	3.5	34	89	0	168	34	30	13	22	1.92
48545282--48545346	22	3.0	22	70	4	60	43	13	18	24	1.87
48545358--48545572	32	6.7	32	78	6	193	35	22	22	19	1.96
48545352--48545572	64	3.5	64	79	2	248	35	21	23	19	1.96
48545365--48545573	96	2.2	96	81	5	253	36	22	22	18	1.95
48545717--48545775	24	2.5	23	78	8	73	47	23	6	22	1.75
48545836--48546137	27	11.2	27	80	3	259	24	20	18	35	1.95
48546079--48546180	27	3.8	27	75	10	68	19	22	19	38	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48546094--48546180	27	3.2	27	81	4	113	19	24	19	36	1.95
48550612--48550706	37	2.6	37	83	8	115	44	31	11	12	1.78
48557996--48558050	14	4.3	13	71	19	53	27	16	12	43	1.84
48564979--48565090	58	1.9	59	83	8	149	47	3	3	45	1.37
48565038--48565178	68	2.1	68	81	7	162	51	4	4	40	1.41
48575331--48575371	17	2.5	17	88	4	57	26	17	9	46	1.79
48584955--48585002	25	2.0	24	91	4	78	14	25	20	39	1.91
48598280--48598309	2	15.0	2	100	0	60	0	50	0	50	1.00
48600663--48600712	16	3.0	17	82	11	59	60	0	0	40	0.97
48602560--48602635	6	12.0	6	75	10	53	19	1	6	72	1.14
48602561--48602607	18	2.6	18	89	0	67	14	2	10	72	1.21
48602579--48602655	34	2.2	35	81	2	84	20	3	5	70	1.23
48604223--48604263	20	2.0	20	90	0	64	34	7	4	53	1.50
48604228--48604271	20	2.2	20	87	0	61	34	6	6	52	1.55
48604714--48604753	22	1.9	22	85	10	57	35	0	2	62	1.09
48604710--48604759	22	2.4	20	76	6	55	34	0	2	64	1.05
48604718--48604763	24	2.0	23	86	4	65	32	0	2	65	1.05
48608386--48608438	20	2.7	20	96	0	97	28	7	7	56	1.54
48608386--48608454	20	3.5	20	91	0	93	28	7	7	56	1.53
48608897--48608948	22	2.3	23	80	6	63	32	0	0	67	0.91
48618279--48618309	16	1.9	16	100	0	62	51	16	12	19	1.76
48629834--48629868	14	2.4	14	90	4	52	77	5	14	2	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48629843--48629869	14	1.9	14	100	0	54	74	7	11	7	1.23
48631875--48632171	97	3.0	97	81	10	397	30	15	20	33	1.94
48632904--48632961	29	2.0	29	100	0	116	20	17	10	51	1.74
48632904--48632976	29	2.6	28	89	8	98	21	17	9	50	1.74
48640833--48640893	20	3.0	20	74	13	61	62	9	14	13	1.55
48651298--48651826	44	11.3	44	68	17	291	32	17	21	28	1.96
48651307--48651876	142	4.0	142	93	0	962	32	17	21	28	1.96
48651493--48651674	98	1.9	97	81	6	224	32	17	20	29	1.96
48658737--48658830	45	2.1	45	80	7	102	26	14	20	38	1.91
48662148--48662176	15	1.9	15	100	0	58	41	6	6	44	1.58
48662154--48662396	83	2.9	83	98	0	468	34	9	11	44	1.74
48663546--48663721	95	1.9	95	97	0	334	31	20	15	32	1.94
48669144--48669170	12	2.2	12	100	0	54	25	0	0	74	0.83
48670990--48671024	17	2.1	17	100	0	70	54	5	5	34	1.48
48671317--48671412	11	8.7	11	69	29	55	71	3	22	2	1.10
48671331--48671397	25	2.7	26	79	9	68	70	4	23	1	1.14
48671358--48671412	18	3.9	14	77	22	53	74	0	25	0	0.82
48671316--48671400	11	7.3	11	69	20	57	71	3	22	2	1.12
48683982--48684031	21	2.3	21	86	6	64	42	6	10	42	1.63
48684084--48684122	19	2.2	18	86	9	53	74	2	12	10	1.17
48684147--48684191	12	3.6	12	88	11	56	75	0	24	0	0.80
48689187--48689225	19	2.2	18	86	9	53	74	2	12	10	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48696033--48696060	13	2.2	13	100	0	56	60	14	25	0	1.34
48720276--48720303	6	4.7	6	100	0	56	53	0	28	17	1.44
48722366--48722410	22	2.0	22	100	0	90	33	17	13	35	1.89
48730629--48730671	18	2.3	18	80	11	52	62	6	6	23	1.45
48731065--48731106	21	2.0	21	81	9	50	54	2	2	40	1.26
48745327--48745711	27	14.4	27	80	7	324	44	20	16	18	1.86
48745327--48745711	54	7.2	54	82	5	413	44	20	16	18	1.86
48745340--48745697	81	4.5	80	85	2	443	44	21	16	18	1.87
48747155--48747435	71	4.0	71	100	0	562	21	29	12	36	1.90
48749728--48749760	17	1.9	17	93	0	57	63	3	3	30	1.24
48753435--48753537	30	3.5	30	81	2	102	28	25	24	22	1.99
48753489--48753545	28	2.1	27	90	3	87	33	22	22	21	1.97
48753657--48753752	26	3.7	26	77	2	113	31	23	25	19	1.98
48753654--48753760	52	2.1	52	85	3	144	31	22	24	21	1.98
48753954--48754472	27	19.2	27	80	5	523	22	15	17	43	1.88
48755502--48755601	48	2.1	48	96	0	182	22	42	2	34	1.65
48760353--48760381	8	3.6	8	100	0	58	34	0	0	65	0.93
48761624--48761682	7	8.4	7	98	0	100	49	13	0	37	1.43
48761611--48761684	7	10.7	7	92	4	80	52	10	0	36	1.36
48761611--48761684	14	5.4	14	87	6	89	52	10	0	36	1.36
48761611--48761713	21	4.9	20	78	10	73	58	8	0	33	1.29
48761673--48761739	14	4.6	14	83	12	91	71	4	0	23	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48761680--48761739	8	8.2	8	73	23	53	73	3	0	23	0.98
48761666--48761739	7	10.3	7	74	21	55	70	5	0	24	1.08
48766734--48766918	40	4.7	40	81	7	200	24	22	27	24	2.00
48766787--48766951	79	2.1	79	83	6	201	26	21	27	24	1.99
48774851--48774922	6	12.5	6	75	8	51	76	6	4	12	1.13
48774802--48774869	26	2.6	25	75	13	66	67	4	7	20	1.33
48774854--48774899	16	2.7	18	80	10	60	73	8	0	17	1.07
48789444--48789474	16	1.9	16	100	0	62	38	0	0	61	0.96
48789379--48789854	120	4.0	120	93	1	760	43	1	4	50	1.30
48789681--48789714	17	2.0	17	100	0	68	41	0	0	58	0.98
48789379--48789854	239	2.0	238	91	0	772	43	1	4	50	1.30
48789800--48789834	18	2.0	17	88	5	52	45	0	0	54	0.99
48789997--48790086	45	2.0	44	82	6	110	36	28	5	28	1.80
48790066--48790134	16	4.3	16	90	0	102	24	33	5	36	1.80
48792335--48792438	47	2.1	49	84	5	140	34	8	24	32	1.86
48794704--48794888	85	2.2	85	90	0	289	39	16	16	28	1.90
48795376--48795414	18	2.2	18	85	0	51	20	28	2	48	1.62
48798225--48798286	31	2.0	31	100	0	124	22	6	22	48	1.73
48800156--48800317	77	2.1	77	98	0	315	40	7	9	41	1.66
48800606--48800738	56	2.3	57	81	10	146	42	0	3	53	1.19
48800834--48800932	39	2.5	39	91	0	171	34	27	5	33	1.79
48800959--48801011	16	3.3	16	81	0	61	22	28	7	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48807129--48807167	14	2.6	15	88	8	53	33	10	17	38	1.84
48807316--48807367	19	2.7	19	77	17	54	57	5	0	36	1.23
48807663--48807702	20	2.0	20	90	0	62	27	10	12	50	1.72
48807839--48807889	26	2.2	24	78	21	56	60	5	0	33	1.21
48811413--48811511	23	4.3	23	89	0	162	30	26	20	23	1.98
48813803--48814805	220	4.6	220	98	0	1877	37	8	10	43	1.69
48817645--48817700	22	2.5	23	82	2	69	51	1	1	44	1.22
48817676--48817715	16	2.5	16	91	0	62	47	2	7	42	1.45
48817726--48817865	59	2.4	59	98	0	271	39	4	9	47	1.55
48817847--48817874	9	3.1	9	100	0	56	32	0	10	57	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187