genome.fa.s15.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  126  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37554139--37554274	26	5.6	24	77	11	107	25	24	21	28	1.99
37554138--37554243	24	4.3	24	78	10	92	23	26	17	32	1.97
37554402--37554464	19	3.3	19	77	4	72	30	4	23	41	1.75
37557463--37557503	21	2.0	21	85	0	55	53	4	9	31	1.55
37557498--37557547	25	2.0	26	92	4	84	62	0	18	20	1.34
37557500--37557554	26	2.2	25	86	3	74	61	0	16	21	1.34
37559667--37559722	29	1.9	29	92	0	94	50	5	16	28	1.67
37560030--37560188	79	2.0	79	98	0	309	22	18	20	38	1.93
37563485--37564669	47	25.2	47	98	0	2208	32	12	29	25	1.92
37564683--37564819	46	3.0	46	91	0	220	35	8	29	25	1.86
37566744--37566966	40	5.6	40	83	3	227	27	27	19	24	1.99
37569031--37569083	22	2.4	21	78	3	52	66	5	3	24	1.31
37576766--37576937	46	3.7	46	76	13	190	28	27	22	21	1.99
37576771--37576941	93	1.8	93	92	0	288	28	28	22	21	1.99
37577324--37577473	74	2.0	74	96	0	273	38	20	6	34	1.79
37577438--37577497	30	2.0	30	86	0	84	30	26	8	35	1.86
37578315--37578340	11	2.4	11	100	0	52	30	26	0	42	1.56
37579334--37579388	27	2.0	27	100	0	110	27	29	29	14	1.95
37581255--37581293	20	1.9	20	84	5	51	35	7	10	46	1.67
37594698--37594826	46	2.8	46	93	0	213	30	27	21	20	1.98
37595009--37595157	79	1.9	77	79	8	167	46	13	5	34	1.66
37595328--37595387	30	2.0	30	86	0	84	30	26	8	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37598693--37598757	20	3.3	20	69	26	66	6	4	27	61	1.40
37598702--37598764	16	3.5	16	70	25	54	4	4	23	66	1.30
37598689--37598766	39	2.0	39	100	0	156	7	5	25	61	1.44
37598702--37598767	17	3.6	17	70	26	55	4	6	22	66	1.32
37598708--37598770	20	3.2	20	65	13	58	4	7	22	65	1.38
37604288--37604366	40	2.0	40	100	0	158	58	10	10	21	1.60
37604708--37604879	48	3.6	48	81	6	174	29	19	27	23	1.98
37605304--37605351	24	2.0	24	95	0	87	22	29	31	16	1.96
37609782--37609920	42	3.3	42	78	0	161	31	17	24	26	1.97
37616120--37616152	15	2.2	15	94	0	57	45	6	15	33	1.70
37618060--37618103	20	2.1	21	84	12	56	38	4	2	54	1.33
37619401--37619481	18	4.3	20	75	16	75	23	30	4	40	1.76
37619399--37619481	38	2.2	37	81	8	96	22	30	4	42	1.74
37621548--37621658	27	4.1	27	82	5	136	19	22	20	36	1.95
37625543--37625925	49	8.0	49	89	4	593	30	31	8	30	1.86
37625541--37625928	96	4.0	96	96	0	695	29	30	7	31	1.86
37639605--37639635	12	2.6	12	94	0	53	77	0	6	16	0.97
37641018--37641124	55	1.9	55	84	3	144	18	28	26	27	1.98
37641017--37641159	55	2.6	56	79	7	139	18	28	25	27	1.98
37641407--37641488	43	1.9	43	89	0	128	17	17	29	36	1.92
37642105--37642148	21	2.1	21	100	0	88	36	29	4	29	1.77
37650526--37650582	30	1.9	29	89	3	87	57	14	15	12	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37653563--37653828	93	2.9	93	94	2	455	27	30	21	21	1.98
37653610--37653778	47	3.6	47	79	13	222	28	30	20	20	1.98
37653556--37653818	46	5.7	46	75	16	247	28	30	20	21	1.98
37656656--37656964	49	6.5	49	71	12	173	26	18	28	26	1.98
37657307--37657506	100	2.0	100	100	0	400	28	17	22	33	1.96
37658882--37658967	34	2.6	34	85	5	104	26	22	22	29	1.99
37659307--37659374	34	2.0	34	82	5	84	27	20	23	27	1.99
37658678--37659483	407	2.0	408	88	1	1213	30	24	19	24	1.98
37668331--37668394	31	2.1	31	87	0	92	26	23	14	35	1.93
37667944--37668443	251	2.0	250	96	1	912	29	23	20	26	1.99
37668610--37669514	23	39.1	23	94	2	1591	29	22	20	26	1.99
37669561--37669611	20	2.5	20	90	0	75	31	19	11	37	1.88
37669648--37669694	24	2.0	24	86	0	67	27	14	25	31	1.95
37669745--37669905	24	6.7	24	90	4	218	28	22	21	27	1.99
37669745--37669904	23	6.7	23	89	6	212	28	22	21	27	1.99
37669951--37670001	20	2.5	20	90	0	75	31	19	11	37	1.88
37671360--37671467	27	3.9	27	77	13	94	31	5	18	44	1.73
37671423--37671546	27	4.6	27	80	4	133	28	5	22	43	1.76
37671424--37671579	81	1.9	81	84	5	208	28	7	20	42	1.79
37671433--37671601	81	2.1	81	81	3	189	30	7	21	40	1.81
37671578--37671776	27	7.3	27	84	2	238	38	7	23	31	1.81
37676530--37676580	16	3.2	16	83	8	68	50	19	21	7	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37676530--37676580	8	6.4	8	80	8	59	50	19	21	7	1.72
37676792--37676906	29	4.0	28	86	6	142	29	15	27	26	1.96
37677914--37677956	20	2.2	19	83	4	50	20	0	18	60	1.36
37677951--37678003	18	3.0	18	91	2	81	39	18	13	28	1.88
37689405--37689466	26	2.3	27	83	10	83	37	25	8	29	1.85
37689574--37689672	27	3.6	28	87	4	139	23	25	19	32	1.97
37697102--37697212	27	4.1	27	88	5	163	36	22	24	16	1.94
37700760--37700967	40	5.2	40	84	4	109	26	28	22	23	1.99
37700783--37700967	40	4.6	41	88	3	234	25	27	22	24	2.00
37700813--37700961	81	1.8	81	89	2	237	26	28	21	23	1.99
37703528--37703641	27	4.2	28	81	5	119	17	23	21	37	1.94
37703527--37703641	55	2.1	52	81	10	133	17	23	21	37	1.94
37707063--37707163	45	2.2	45	85	3	132	37	22	11	27	1.89
37711434--37711617	40	4.7	40	81	11	195	25	26	22	26	2.00
37711434--37711617	79	2.3	82	81	11	215	25	26	22	26	2.00
37715479--37715546	29	2.3	29	82	5	84	27	29	13	29	1.94
37715366--37715871	176	2.9	176	97	0	944	31	24	14	30	1.94
37715655--37715722	29	2.3	29	85	5	93	27	30	13	27	1.94
37715824--37715902	29	2.7	30	82	13	110	29	30	15	25	1.96
37718996--37719177	44	4.1	44	62	10	102	30	20	23	25	1.98
37718946--37719624	132	5.1	132	93	0	1106	29	20	24	25	1.99
37719657--37720643	44	22.6	43	69	12	373	28	21	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37719956--37720293	173	2.0	173	94	0	595	28	19	23	28	1.99
37719618--37720510	217	4.1	217	79	8	816	28	20	23	27	1.99
37720129--37720643	224	2.3	219	81	5	558	29	21	22	26	1.99
37719739--37720682	397	2.4	397	81	4	977	29	20	22	27	1.99
37720953--37721027	19	3.8	19	87	6	96	38	8	13	40	1.74
37720985--37721050	21	3.0	22	85	12	75	39	4	13	42	1.65
37721018--37721060	22	1.9	23	85	4	61	34	4	13	46	1.65
37721227--37721266	21	2.0	20	85	5	53	17	15	5	62	1.49
37723794--37723875	42	2.0	42	87	4	121	31	24	13	30	1.93
37726396--37726439	23	1.9	22	82	17	54	36	25	0	38	1.56
37726486--37726577	45	2.0	45	87	0	130	31	21	19	27	1.97
37726574--37726767	51	3.8	51	79	3	214	29	27	18	24	1.98
37726581--37726765	101	1.8	101	88	5	284	30	27	17	24	1.97
37729186--37729215	8	3.6	8	95	4	51	23	10	0	66	1.21
37746443--37746569	63	2.0	63	83	3	157	26	16	7	48	1.73
37748242--37748336	25	3.8	25	72	0	82	31	22	20	26	1.98
37762016--37763001	490	2.0	490	88	0	1445	37	17	12	32	1.87
37768770--37768940	85	2.0	85	94	0	297	40	17	15	26	1.89
37787648--37787703	27	2.1	27	96	0	103	51	14	21	12	1.74
37787648--37787694	15	3.3	15	71	17	55	57	12	17	12	1.65
37815193--37815747	27	20.6	27	79	6	536	43	19	18	17	1.88
37823066--37823278	27	8.0	27	85	4	288	42	18	21	17	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37823067--37823277	80	2.6	81	86	3	293	42	18	21	18	1.89
37823058--37823282	53	4.2	53	86	5	301	43	17	20	18	1.88
37857093--37857136	11	3.9	11	82	5	52	63	2	0	34	1.07
37859061--37859325	50	5.3	50	82	2	275	21	29	23	26	1.99
37859297--37859352	27	2.1	27	96	0	103	21	37	14	26	1.92
37859247--37859403	77	2.0	77	96	0	287	21	34	18	25	1.96
37859324--37859619	50	5.9	50	86	5	373	23	29	18	28	1.98
37859213--37859450	127	1.9	127	93	0	413	21	31	20	26	1.98
37859149--37859502	177	2.0	177	88	0	528	20	31	21	26	1.98
37859110--37859532	227	1.9	227	89	0	657	21	29	21	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187