genome.fa.s15.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  156  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46972879--46973287	23	17.5	23	72	3	287	28	12	16	43	1.84
46972877--46973304	70	6.1	70	92	1	649	28	11	16	42	1.84
46972914--46973264	47	7.5	47	70	12	157	28	11	15	43	1.82
46972988--46973359	23	15.8	25	70	14	127	28	11	18	41	1.85
46976375--46976463	38	2.3	38	86	0	124	35	24	15	23	1.94
46976400--46976476	38	2.0	38	87	0	109	37	25	14	22	1.92
46984845--46984982	71	1.9	71	98	0	267	36	14	15	33	1.89
46985613--46985666	28	2.0	28	88	3	83	3	18	3	74	1.12
46985616--46985653	17	2.2	17	86	13	51	2	15	2	78	0.97
46989609--46989646	13	2.7	14	92	8	60	73	2	0	23	0.95
46995886--46995918	17	1.9	18	88	11	52	42	15	0	42	1.46
46997067--46997122	21	2.7	21	91	0	94	33	41	8	16	1.79
46997541--46997600	27	2.2	28	85	8	79	46	5	1	46	1.34
47002280--47002329	5	10.0	5	83	12	59	0	22	4	74	0.99
47002280--47002329	19	2.5	19	81	15	57	0	22	4	74	0.99
47009348--47009705	175	2.0	177	95	1	648	34	12	20	33	1.89
47013089--47013330	43	5.6	43	82	1	270	29	25	17	27	1.98
47013089--47013327	87	2.8	87	80	2	241	29	25	17	28	1.97
47014350--47014705	193	1.9	191	82	5	459	42	19	9	28	1.83
47014350--47014757	193	2.1	193	81	7	454	42	18	9	29	1.82
47016729--47016792	15	4.4	14	82	3	56	46	29	0	23	1.52
47016708--47016767	28	2.1	29	84	3	77	45	30	1	23	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47016730--47016792	22	2.9	21	79	11	74	47	30	0	22	1.51
47016757--47016791	15	2.3	15	95	0	61	45	28	0	25	1.54
47017015--47017048	15	2.3	15	89	0	50	41	47	0	11	1.40
47017061--47017097	14	2.6	14	86	0	56	35	43	0	21	1.53
47017453--47017549	41	2.4	41	87	6	135	31	28	16	22	1.96
47022253--47022316	32	2.0	32	100	0	128	34	3	25	37	1.72
47025639--47026981	132	10.3	132	85	5	1707	27	24	19	28	1.98
47026139--47026707	44	12.9	44	64	14	199	27	23	19	28	1.98
47025660--47026930	389	3.2	390	88	5	1815	27	24	19	28	1.99
47025660--47026929	521	2.4	516	88	4	1856	27	24	19	28	1.99
47025639--47026930	653	2.0	653	97	0	2435	28	23	19	28	1.99
47028281--47028320	14	2.9	13	88	7	53	20	17	0	62	1.33
47033578--47033615	16	2.2	17	86	13	51	73	7	7	10	1.24
47042322--47042437	59	2.0	60	83	8	148	40	15	15	28	1.88
47048472--47048515	20	2.2	20	84	4	54	22	2	2	72	1.07
47052295--47052366	9	7.7	9	75	22	60	25	0	2	72	0.98
47052297--47052398	12	8.1	12	69	21	57	26	0	5	67	1.13
47052295--47052366	29	2.5	29	86	4	101	25	0	2	72	0.98
47052293--47052369	17	4.7	16	70	20	61	24	0	2	72	0.97
47057065--47057099	15	2.4	15	90	4	54	48	0	8	42	1.33
47062866--47062931	10	6.8	9	73	14	51	31	12	31	24	1.92
47062858--47062921	20	3.2	19	80	12	67	32	12	28	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47065119--47065153	18	1.9	18	88	11	54	22	20	0	57	1.41
47065141--47065237	6	15.7	6	68	6	59	9	19	3	68	1.31
47065141--47065237	18	5.2	18	69	10	70	9	19	3	68	1.31
47068351--47068391	18	2.3	18	91	0	64	41	0	4	53	1.22
47069093--47069152	21	3.0	20	73	24	54	65	1	1	31	1.13
47088042--47088197	28	5.8	25	76	17	152	23	17	22	35	1.95
47088042--47088411	29	13.2	28	79	8	314	25	16	21	36	1.94
47088089--47088284	83	2.3	83	82	9	213	26	15	21	36	1.94
47101630--47101658	9	3.2	9	100	0	58	48	20	0	31	1.50
47103600--47103795	30	6.6	30	80	2	189	38	27	17	16	1.91
47103603--47103818	60	3.6	60	78	3	204	38	27	16	17	1.91
47104300--47104367	9	7.6	9	84	0	82	39	17	11	30	1.86
47104300--47104364	27	2.4	27	89	0	94	40	18	12	29	1.87
47104374--47104428	6	9.0	6	86	4	74	18	1	16	63	1.39
47104393--47104441	18	2.5	20	87	6	66	20	0	14	65	1.27
47109507--47109563	21	2.6	21	80	5	69	61	3	0	35	1.13
47113113--47113139	14	1.9	14	100	0	54	66	0	0	33	0.92
47126693--47126727	18	1.9	18	88	11	54	31	14	8	45	1.75
47134463--47135056	44	13.8	42	71	14	281	26	21	21	30	1.98
47134552--47134839	128	2.2	128	100	0	576	28	20	21	29	1.98
47134411--47135056	345	1.9	345	85	3	917	26	21	21	30	1.98
47135421--47135524	44	2.4	44	83	6	131	28	26	14	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47135446--47135542	44	2.2	44	85	7	126	29	21	20	27	1.98
47135542--47135943	88	4.6	88	84	0	525	21	22	26	29	1.99
47137124--47137167	23	2.0	23	86	8	65	4	25	0	70	1.06
47138112--47138171	26	2.3	26	82	5	68	58	3	15	23	1.52
47142433--47142464	15	2.1	16	94	5	57	71	0	0	28	0.86
47142877--47142968	19	4.8	19	91	0	157	39	16	8	35	1.79
47142854--47142968	38	2.9	38	92	5	185	40	16	7	35	1.78
47145756--47145787	3	10.7	3	100	0	64	0	34	0	65	0.93
47146656--47146681	8	3.2	8	100	0	52	65	0	0	34	0.93
47147352--47147412	30	2.1	30	84	3	79	52	11	6	29	1.62
47157706--47157787	24	3.4	24	87	1	101	29	24	24	21	1.99
47157706--47157797	24	3.8	23	86	4	94	30	23	23	21	1.99
47178255--47178288	6	5.5	6	96	3	59	14	14	0	70	1.17
47178328--47178363	6	6.0	6	93	0	63	16	19	0	63	1.30
47178255--47178409	75	2.0	77	88	4	235	25	20	3	50	1.65
47179673--47179716	22	2.0	22	86	8	63	38	29	18	13	1.89
47191946--47192064	45	2.6	45	95	0	220	47	12	17	21	1.81
47196561--47196899	178	1.9	179	95	0	608	24	25	11	38	1.88
47200063--47200248	51	3.7	50	79	6	205	32	27	17	22	1.97
47200055--47200245	101	1.9	101	85	5	260	31	26	18	23	1.97
47206787--47206817	15	2.1	15	93	0	53	25	32	3	38	1.72
47216029--47216118	45	2.0	45	95	0	162	22	26	6	44	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47225912--47225960	17	3.0	16	80	11	55	55	8	2	34	1.41
47226062--47226612	241	2.2	251	83	6	687	37	9	7	45	1.66
47228372--47228443	28	2.7	27	76	16	78	45	4	1	48	1.30
47238988--47239029	19	2.2	19	100	0	84	40	4	16	38	1.70
47242898--47242936	20	2.0	20	85	10	53	41	12	17	28	1.87
47251277--47251314	19	2.0	20	89	5	60	36	13	18	31	1.89
47252434--47252465	13	2.6	13	90	9	50	68	0	25	6	1.12
47254134--47254180	25	2.0	25	83	8	62	40	8	4	46	1.54
47262765--47262921	61	2.6	60	79	7	156	45	15	12	26	1.81
47263093--47263126	18	1.9	18	94	5	61	55	5	0	38	1.24
47263493--47263569	31	2.5	31	89	0	109	25	15	14	44	1.84
47265211--47265244	17	2.1	17	88	5	52	52	0	2	44	1.16
47265364--47265400	16	2.3	17	81	13	51	59	0	2	37	1.12
47267874--47267923	24	2.1	24	100	0	100	20	12	20	48	1.80
47270478--47270532	24	2.2	26	93	6	96	21	16	21	40	1.91
47272766--47272871	21	5.0	21	70	4	79	16	19	17	45	1.86
47272766--47272871	42	2.5	42	80	3	124	16	19	17	45	1.86
47279737--47279795	17	3.2	17	70	21	55	52	3	13	30	1.57
47279732--47279805	38	1.9	38	94	5	132	47	4	13	35	1.62
47280350--47280418	21	3.3	21	75	0	66	14	24	20	40	1.90
47280300--47280418	42	2.8	42	83	0	139	17	24	17	40	1.91
47280392--47280432	21	2.0	21	85	0	55	12	17	24	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47285701--47285933	104	2.2	105	86	2	308	21	32	21	24	1.98
47286584--47286623	17	2.5	16	84	11	55	75	2	20	2	1.04
47292000--47292053	28	1.9	29	85	7	76	33	7	9	50	1.62
47292082--47292295	116	1.8	118	80	7	256	40	4	7	47	1.51
47302850--47303288	50	8.7	50	81	4	427	24	28	19	27	1.99
47302949--47303296	150	2.3	152	87	5	488	22	30	20	26	1.98
47311990--47312047	22	2.6	22	75	22	66	48	1	10	39	1.48
47318333--47318390	19	3.1	18	73	9	53	37	17	29	15	1.90
47318333--47318415	38	2.2	39	84	2	105	37	19	28	14	1.91
47319718--47319744	12	2.2	12	100	0	54	14	22	29	33	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187