genome.fa.s15.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  110  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32435460--32435581	51	2.4	51	91	4	192	28	29	0	40	1.62
32435596--32435640	20	2.2	20	88	7	65	33	0	0	66	0.92
32435583--32435646	31	2.1	31	91	2	103	34	0	1	64	1.03
32437644--32437821	51	3.5	51	64	15	125	28	16	25	29	1.97
32437746--32437924	50	3.6	48	83	9	218	29	14	26	29	1.95
32439708--32439742	18	1.9	18	88	0	52	25	34	8	31	1.86
32440145--32440330	26	7.7	25	63	20	83	38	3	15	43	1.62
32440143--32440327	71	2.6	71	94	0	325	37	3	15	44	1.62
32440333--32440456	29	4.3	29	96	0	212	43	25	1	29	1.64
32440451--32440631	55	3.3	55	100	0	362	38	12	4	44	1.63
32440615--32440639	10	2.5	10	100	0	50	44	8	0	48	1.32
32441070--32441193	29	4.3	29	96	0	212	43	25	1	29	1.64
32441188--32441313	55	2.3	55	100	0	252	38	11	4	45	1.62
32441297--32441321	10	2.5	10	100	0	50	44	8	0	48	1.32
32445421--32445500	37	2.2	37	93	0	133	43	20	12	23	1.85
32460012--32460077	5	13.2	5	100	0	132	60	0	0	39	0.97
32478934--32479197	40	6.7	40	89	5	360	25	27	21	25	1.99
32486868--32487168	39	7.6	39	89	6	400	23	27	22	25	2.00
32496292--32496383	46	2.0	46	100	0	184	21	8	28	41	1.83
32509013--32509085	30	2.4	30	90	0	119	23	24	30	21	1.99
32516961--32517025	19	3.1	21	82	10	80	40	15	6	38	1.72
32516987--32517040	19	2.8	19	88	0	81	38	14	11	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32522858--32522973	32	3.6	32	86	1	151	43	7	8	40	1.64
32531598--32531681	42	2.0	42	85	0	114	19	27	35	17	1.94
32534286--32534318	3	11.0	3	93	0	57	63	0	0	36	0.95
32534975--32535000	11	2.4	11	100	0	52	0	42	7	50	1.31
32535036--32535075	20	2.0	20	85	9	55	2	15	5	77	1.04
32535206--32535273	31	2.3	28	78	9	73	41	2	1	54	1.24
32535252--32535290	21	1.9	20	84	5	51	46	2	0	51	1.14
32540191--32540233	21	2.0	21	82	8	52	23	20	4	51	1.66
32541752--32541787	3	12.0	3	87	0	54	61	0	0	38	0.96
32541972--32541997	11	2.4	11	100	0	52	0	42	7	50	1.31
32542033--32542072	20	2.0	20	85	9	55	2	15	5	77	1.04
32542203--32542270	31	2.3	28	78	9	73	41	2	1	54	1.24
32542249--32542287	21	1.9	20	84	5	51	46	2	0	51	1.14
32555759--32555783	5	5.0	5	100	0	50	80	0	0	20	0.72
32556691--32556786	6	15.3	6	92	5	93	73	16	9	0	1.07
32556705--32556786	12	6.8	12	97	0	119	73	17	9	0	1.09
32556704--32556786	18	4.6	18	93	0	121	73	16	9	0	1.08
32559723--32559757	13	2.7	13	86	0	52	68	0	5	25	1.11
32561092--32561166	36	2.1	36	94	0	132	52	13	16	18	1.75
32568998--32569022	7	3.6	7	100	0	50	12	12	0	76	1.04
32570432--32570610	28	6.4	28	87	3	254	32	22	22	22	1.98
32570437--32570610	84	2.1	84	92	2	287	32	22	22	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32570711--32570791	26	3.1	26	73	7	67	35	24	18	20	1.95
32570992--32571074	27	3.1	27	81	10	82	26	19	16	37	1.93
32571012--32571433	54	7.9	54	73	11	282	22	16	19	41	1.90
32571026--32571375	27	13.3	27	77	11	255	21	17	19	42	1.89
32571070--32571107	19	2.0	19	90	10	60	21	15	15	47	1.82
32571043--32571133	46	2.0	46	84	4	121	19	16	18	45	1.86
32571023--32571161	73	1.9	73	90	0	224	21	17	17	43	1.87
32571089--32571390	81	3.7	80	80	7	306	21	15	20	42	1.89
32571089--32571433	27	12.7	27	77	8	256	22	16	19	42	1.89
32573160--32573250	48	1.9	47	93	2	155	18	14	27	39	1.89
32574519--32574587	17	4.1	17	74	10	70	52	14	13	20	1.74
32582016--32582072	25	2.3	25	84	0	78	24	21	22	31	1.98
32584593--32584713	43	2.8	43	84	1	134	34	24	18	22	1.96
32584571--32584732	43	3.7	43	80	2	128	32	22	18	25	1.97
32585757--32585848	46	2.0	46	84	2	121	40	10	19	29	1.86
32589992--32590024	14	2.3	15	94	5	59	36	33	0	30	1.58
32590073--32590109	14	2.6	14	95	0	65	48	29	0	21	1.50
32590433--32590665	41	5.7	41	83	4	283	31	23	20	24	1.98
32590705--32590789	39	2.2	40	83	10	104	21	18	18	41	1.91
32602937--32603048	55	2.0	55	84	6	147	41	16	17	25	1.89
32602937--32603026	28	3.2	28	95	1	155	44	14	16	24	1.85
32605923--32606069	50	2.9	50	74	1	150	23	23	23	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32605873--32606069	100	2.0	102	89	4	310	23	20	22	32	1.98
32606127--32606920	87	9.1	87	92	1	1196	25	24	21	28	1.99
32613245--32613381	43	3.2	43	66	17	120	23	23	25	27	2.00
32612972--32613480	87	5.8	87	89	2	709	24	24	23	27	2.00
32614708--32614756	7	7.3	7	80	17	59	16	18	0	65	1.28
32614717--32614756	13	3.0	13	96	3	71	15	17	0	67	1.23
32614708--32614756	20	2.5	19	86	6	62	16	18	0	65	1.28
32615591--32615624	13	2.7	13	90	4	52	0	17	0	82	0.67
32615645--32615677	11	3.3	10	88	12	50	9	0	9	81	0.87
32622108--32622553	27	16.6	27	86	4	537	40	18	16	24	1.90
32622754--32622800	24	2.0	24	91	0	76	19	8	17	55	1.67
32622928--32622981	26	2.1	26	89	0	81	16	20	25	37	1.93
32622983--32623075	32	2.9	32	83	0	123	21	21	19	37	1.94
32623016--32623097	32	2.6	32	81	12	98	23	19	18	39	1.93
32627853--32627887	8	4.4	8	100	0	70	22	0	0	77	0.78
32628744--32628779	15	2.3	17	86	13	51	55	5	16	22	1.62
32632492--32632531	20	2.0	20	85	9	55	22	30	0	47	1.52
32638841--32638968	54	2.4	54	79	12	147	54	4	0	39	1.27
32639183--32639672	245	2.0	245	98	0	953	39	19	11	29	1.87
32648891--32648916	6	4.3	6	100	0	52	46	15	19	19	1.85
32649103--32649135	16	2.0	17	88	5	50	30	3	9	57	1.45
32651196--32651439	40	6.1	39	83	9	264	25	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32651196--32651453	119	2.2	119	81	9	287	25	22	26	25	2.00
32655593--32655625	15	2.1	17	88	11	52	54	12	15	18	1.71
32663583--32663768	50	3.8	49	79	5	160	26	22	27	23	1.99
32667509--32667547	21	1.9	20	84	5	51	25	25	7	41	1.82
32669603--32669628	11	2.4	11	100	0	52	53	19	0	26	1.45
32670027--32670073	14	3.2	15	76	11	53	42	21	0	36	1.53
32672978--32673021	23	1.9	23	85	0	61	31	20	31	15	1.94
32673076--32673149	25	2.9	25	83	13	96	37	22	24	14	1.92
32675069--32675099	9	3.4	9	90	0	53	25	12	22	38	1.90
32675151--32675187	9	4.1	9	85	0	56	48	13	8	29	1.71
32675247--32675318	29	2.5	29	100	0	144	23	41	0	34	1.55
32675363--32675439	31	2.5	30	85	4	100	24	29	0	45	1.54
32676092--32676123	5	6.4	5	100	0	64	21	18	18	40	1.91
32692299--32692454	40	3.9	39	83	5	179	25	22	27	25	2.00
32692299--32692454	79	2.0	80	83	6	201	25	22	27	25	2.00
32694082--32694661	288	2.0	288	96	0	1070	36	19	18	25	1.94
32700984--32701009	8	3.2	8	100	0	52	11	11	11	65	1.48
32703995--32704023	14	2.1	14	100	0	58	51	6	13	27	1.66
32705173--32705205	16	2.1	16	94	0	57	39	12	9	39	1.74
32711261--32711330	36	1.9	36	94	0	122	57	5	14	22	1.59
32711271--32711329	19	3.2	19	64	9	50	61	6	13	18	1.54
32714003--32714172	19	9.2	19	69	25	75	32	4	0	62	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32714008--32714057	16	2.8	17	85	11	57	36	8	0	56	1.29
32714014--32714139	60	2.2	56	84	9	157	34	3	0	61	1.20
32714061--32714150	11	7.7	11	75	16	67	32	2	0	65	1.05
32718062--32718116	27	2.0	27	96	0	101	32	0	18	49	1.48
32718700--32718733	17	2.0	17	94	0	59	38	2	11	47	1.55
32728360--32728428	21	3.3	21	87	2	95	11	24	8	55	1.64
32730846--32730870	12	2.1	12	100	0	50	48	8	0	44	1.32
32732502--32732559	19	2.9	20	76	7	64	17	43	24	15	1.87
32737830--32737928	24	4.2	24	72	13	98	42	18	1	38	1.57
32737830--32737928	25	4.2	25	72	13	102	42	18	1	38	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187