genome.fa.s15.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  139  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41867937--41867967	16	1.9	16	93	0	53	45	9	9	35	1.70
41868827--41869073	30	8.3	30	70	13	136	40	12	23	23	1.89
41868827--41869019	61	3.2	60	76	11	162	41	12	24	21	1.87
41868827--41869047	89	2.4	90	84	8	272	41	12	23	22	1.88
41868944--41869114	59	2.9	58	73	9	166	39	12	23	23	1.89
41868909--41869100	89	2.2	89	82	6	221	41	13	20	24	1.88
41868943--41869118	29	6.0	28	76	10	113	39	13	22	23	1.90
41872797--41872908	56	2.0	55	94	1	197	35	17	22	23	1.95
41875090--41875126	16	2.3	16	90	9	58	48	2	18	29	1.62
41875730--41875831	40	2.5	40	82	6	118	33	20	12	33	1.90
41875856--41875942	36	2.4	36	82	3	104	36	16	14	32	1.89
41877111--41877155	17	2.4	18	82	14	56	33	0	20	46	1.51
41880848--41880885	19	2.0	19	85	10	51	21	42	0	36	1.53
41883466--41883604	46	3.0	46	87	2	199	35	8	25	30	1.86
41886984--41887224	10	25.2	9	68	20	86	58	1	5	34	1.29
41886983--41887158	29	6.0	29	69	17	89	59	0	3	36	1.18
41886977--41887048	26	2.7	26	80	6	81	65	1	0	33	1.02
41887031--41887092	30	2.1	30	90	6	99	62	0	4	32	1.16
41887166--41887221	19	2.9	19	77	15	62	62	1	8	26	1.35
41887171--41887224	9	5.9	9	73	26	51	62	1	5	29	1.28
41887260--41887289	16	1.9	15	93	6	51	16	0	3	80	0.85
41887408--41887516	9	11.8	9	67	15	62	37	0	0	60	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41887397--41887457	19	3.3	19	81	6	72	27	3	3	65	1.24
41887407--41887463	27	2.0	29	86	6	82	36	1	1	59	1.18
41887413--41887484	27	2.7	26	78	6	81	37	1	1	59	1.15
41887671--41887895	89	2.5	87	88	7	328	34	11	19	34	1.87
41889082--41889145	31	2.1	31	96	0	119	42	3	3	51	1.33
41892851--41893125	93	3.0	93	86	0	354	30	8	15	46	1.75
41893098--41893147	23	2.2	23	85	0	64	30	12	16	42	1.84
41892851--41893125	31	8.9	31	86	0	309	30	8	15	46	1.75
41893105--41893150	23	2.0	23	95	0	83	26	10	21	41	1.86
41897196--41897233	20	1.9	20	88	0	58	7	28	21	42	1.81
41899425--41899486	20	3.0	20	81	11	54	37	1	1	59	1.17
41900061--41900102	22	1.9	22	85	9	59	14	0	35	50	1.43
41901991--41902100	53	2.1	53	86	3	150	33	13	20	30	1.92
41909505--41909816	33	8.8	33	68	23	170	20	18	27	33	1.96
41909473--41909702	102	2.3	102	93	0	388	20	19	28	32	1.96
41909603--41909814	76	2.8	75	91	0	334	21	18	27	32	1.97
41913222--41913271	20	2.4	22	80	12	61	74	4	18	4	1.14
41913220--41913271	21	2.7	19	85	11	63	75	3	17	3	1.11
41925728--41925802	1	75.0	1	77	0	51	85	0	10	4	0.73
41925800--41925834	4	9.0	4	93	6	63	74	0	25	0	0.82
41925746--41925834	12	7.7	12	78	12	87	77	0	19	3	0.91
41931367--41931433	35	1.9	35	90	3	109	32	8	11	46	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41935371--41935417	22	2.1	22	88	0	67	19	19	46	14	1.84
41935521--41935567	22	2.1	22	92	0	76	14	17	51	17	1.77
41935626--41935656	8	3.8	8	91	8	53	35	0	54	9	1.33
41935626--41935654	9	3.3	9	95	4	51	31	0	58	10	1.31
41936207--41936246	18	2.2	18	86	8	55	67	0	0	32	0.91
41936644--41936673	16	1.9	16	93	6	53	63	0	3	33	1.11
41939367--41939492	35	3.6	35	91	0	180	24	13	18	43	1.86
41939590--41939689	49	2.0	49	84	3	130	24	21	20	35	1.96
41942952--41942976	10	2.5	10	100	0	50	16	40	0	44	1.47
41945276--41945304	3	9.7	3	100	0	58	65	0	0	34	0.93
41945306--41945361	4	14.0	4	96	0	103	48	0	26	25	1.52
41950403--41950468	25	2.6	25	71	17	73	43	3	16	36	1.64
41956540--41956575	18	2.0	18	100	0	72	44	5	11	38	1.63
41959082--41959118	18	2.1	18	94	0	65	54	16	13	16	1.72
41959293--41959343	18	2.9	16	81	18	50	33	1	23	41	1.66
41960451--41960739	43	6.7	43	78	6	257	28	29	17	24	1.97
41960459--41960695	87	2.7	87	82	3	291	28	30	16	24	1.97
41960451--41960751	129	2.3	128	79	9	319	28	29	16	24	1.97
41963285--41963314	15	2.1	15	93	6	53	36	16	0	46	1.47
41964714--41964840	37	3.3	38	77	9	123	22	20	20	36	1.95
41967359--41967389	14	2.2	14	94	0	53	74	0	9	16	1.07
42012454--42012502	20	2.5	20	82	0	71	26	32	14	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42021985--42022500	125	4.1	125	96	0	917	29	15	24	30	1.96
42022781--42022819	16	2.4	16	78	0	51	15	0	28	56	1.40
42022791--42022827	9	4.3	9	83	10	51	13	0	29	56	1.37
42022867--42023269	126	3.2	126	94	0	684	27	16	24	31	1.96
42024499--42024559	25	2.3	26	80	8	79	55	0	1	42	1.09
42033637--42033670	17	2.0	17	88	0	50	44	2	0	52	1.16
42038816--42038858	22	2.0	21	82	13	52	34	4	20	39	1.74
42040100--42040142	11	3.9	11	87	6	61	48	11	30	9	1.71
42040298--42040346	20	2.5	20	86	0	62	51	0	26	22	1.49
42040299--42040354	20	2.8	19	81	5	58	50	0	28	21	1.49
42053889--42054015	39	3.3	39	92	2	202	17	31	14	36	1.90
42055580--42055621	21	2.0	21	85	0	57	47	0	26	26	1.52
42063691--42063758	27	2.5	28	78	9	77	27	30	19	22	1.97
42063691--42063822	28	4.7	27	70	14	72	27	27	15	29	1.96
42063732--42063852	57	2.1	57	83	3	145	24	23	17	34	1.96
42065230--42065320	39	2.3	38	85	12	121	36	21	18	23	1.95
42065866--42066025	7	22.4	7	69	8	63	21	1	31	45	1.62
42065934--42066055	29	4.3	28	75	9	104	23	0	34	40	1.61
42069725--42069768	23	1.9	22	82	17	54	36	25	0	38	1.56
42069903--42070098	51	3.9	50	81	4	232	30	29	17	22	1.97
42069909--42070094	101	1.8	99	88	5	275	31	28	17	22	1.97
42073730--42073857	43	3.0	43	84	2	159	22	17	27	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42074425--42074541	39	3.0	39	93	0	189	31	2	20	45	1.65
42074436--42074579	39	3.7	39	87	6	166	32	2	20	43	1.66
42074511--42074591	39	2.1	38	81	6	92	35	4	19	39	1.74
42078082--42079064	40	24.6	40	97	0	1765	27	27	20	24	1.99
42080644--42080772	53	2.4	53	88	0	186	29	24	12	33	1.92
42080644--42080798	53	2.9	53	83	1	150	29	23	13	32	1.93
42081832--42081893	30	2.1	30	96	0	115	29	25	19	25	1.99
42086973--42087019	19	2.4	20	92	3	78	38	12	10	38	1.78
42096491--42096575	17	4.8	18	71	17	63	55	1	2	41	1.20
42096461--42096527	27	2.5	26	79	15	66	56	1	2	38	1.24
42098400--42099261	4	215.5	4	99	0	1715	49	24	0	25	1.51
42105264--42105450	76	2.5	76	100	0	374	44	11	15	27	1.81
42106232--42106261	15	2.0	15	93	0	51	30	16	13	40	1.87
42114873--42114940	34	2.0	34	91	0	109	30	26	10	32	1.90
42120040--42120108	35	1.9	36	97	2	131	52	18	2	26	1.60
42121885--42121951	33	2.0	33	91	0	107	40	2	43	13	1.59
42129282--42129312	13	2.4	13	94	0	53	54	12	0	32	1.38
42130400--42130500	27	3.7	27	75	10	82	39	11	22	25	1.88
42133410--42133639	50	4.6	50	80	3	234	24	27	20	27	1.99
42137804--42137853	24	2.1	24	100	0	100	26	30	4	40	1.74
42140718--42140788	29	2.4	29	80	0	70	36	28	16	18	1.93
42144971--42145152	91	2.0	91	94	0	319	31	20	3	43	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42157761--42157858	28	3.6	26	86	9	133	31	12	26	29	1.92
42158845--42159461	47	13.1	47	87	1	763	25	12	18	43	1.85
42158845--42159461	94	6.6	94	93	0	925	25	12	18	43	1.85
42160273--42160312	15	2.7	14	88	11	62	60	2	37	0	1.11
42170973--42171160	50	3.6	50	82	4	205	23	29	20	26	1.99
42174222--42174278	25	2.3	25	84	6	71	24	19	24	31	1.98
42183128--42183167	21	1.9	21	89	0	62	27	32	5	35	1.79
42193115--42193209	25	3.8	25	78	0	100	28	22	20	29	1.98
42197652--42197737	45	1.9	45	90	0	136	34	22	15	27	1.94
42197739--42197934	51	3.9	50	79	4	223	31	29	16	22	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187