genome.fa.s15.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  5  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1071925--1071997	37	2.0	35	82	10	85	49	0	0	50	1.00
1071982--1072167	56	3.2	56	67	18	160	50	6	2	40	1.41
1071971--1072209	121	2.0	121	95	0	433	48	9	2	40	1.47
1078636--1078665	6	5.0	6	100	0	60	16	83	0	0	0.65
1087991--1088017	14	1.9	14	100	0	54	0	14	0	85	0.61
1089032--1089088	28	2.0	28	100	0	114	24	10	24	40	1.87
1091839--1091906	21	3.3	21	77	10	68	33	0	8	57	1.30
1091858--1091906	20	2.5	20	86	6	64	36	0	6	57	1.24
1091896--1091934	11	3.5	11	89	0	60	25	2	0	71	0.98
1092460--1092741	141	2.0	141	100	0	564	45	3	16	34	1.64
1094214--1094720	46	11.1	46	85	2	664	41	13	21	23	1.88
1094282--1094357	25	3.2	25	64	21	63	44	14	19	21	1.86
1094262--1094332	21	3.2	21	66	21	54	40	12	23	22	1.88
1094214--1094992	183	4.2	183	78	10	784	41	13	22	22	1.88
1094701--1094739	19	2.1	19	90	0	60	35	23	20	20	1.96
1094656--1094785	65	2.0	65	87	1	190	40	15	23	21	1.91
1094564--1094876	156	2.0	156	85	3	416	41	14	22	22	1.89
1094720--1094992	46	6.0	46	85	2	345	42	13	22	21	1.88
1094427--1094992	293	1.9	293	89	2	877	41	13	22	22	1.88
1094610--1094830	110	2.0	110	92	0	370	41	14	22	21	1.89
1094720--1094980	137	1.9	137	89	2	407	42	14	22	21	1.88
1096244--1096298	23	2.4	24	84	6	69	49	1	5	43	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1103676--1103727	24	2.0	26	85	10	72	53	13	0	32	1.40
1107507--1107542	18	2.0	18	88	0	54	0	19	2	77	0.88
1109810--1109896	22	3.9	22	74	3	75	31	14	2	51	1.55
1109810--1109910	45	2.3	46	83	8	120	30	13	1	53	1.51
1111776--1111859	26	3.2	26	73	15	75	20	7	11	60	1.54
1112848--1112915	34	2.0	34	100	0	136	26	11	17	44	1.83
1117297--1117805	253	2.0	253	97	0	964	26	21	17	34	1.96
1123819--1123861	16	2.6	17	81	3	52	44	4	2	48	1.36
1124415--1124467	26	2.0	26	81	0	61	50	9	11	28	1.69
1124784--1124838	28	2.0	28	96	0	101	36	7	7	49	1.58
1136060--1136099	18	2.2	19	86	4	55	55	0	2	42	1.13
1144649--1144682	17	2.0	17	100	0	68	35	11	11	41	1.78
1144651--1144688	17	2.5	15	87	12	51	34	15	10	39	1.82
1145041--1145178	45	3.1	45	85	4	163	25	28	13	32	1.93
1145260--1145537	44	6.2	45	70	11	169	28	24	16	31	1.96
1145259--1145524	134	2.0	134	94	0	469	27	24	16	31	1.97
1145370--1145533	90	1.9	87	82	6	204	28	24	17	30	1.97
1145590--1146419	44	18.9	44	71	14	506	28	26	15	29	1.96
1145634--1146419	176	4.5	176	91	1	1218	28	26	15	29	1.96
1145983--1146419	45	9.9	44	71	14	301	27	25	15	30	1.96
1145634--1146419	350	2.2	351	90	1	1218	28	26	15	29	1.96
1145678--1146565	132	6.7	131	72	14	460	28	26	15	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1147243--1147397	79	2.0	79	97	2	294	26	21	19	32	1.97
1147589--1147638	9	5.7	9	81	13	68	0	12	0	88	0.53
1147583--1147638	28	2.0	28	93	3	96	1	14	0	83	0.72
1147596--1147629	11	3.3	11	92	8	54	0	11	0	88	0.52
1152579--1152644	19	3.2	21	87	6	64	36	19	9	34	1.84
1152596--1152657	19	3.2	19	93	4	97	35	16	9	38	1.81
1152720--1152754	14	2.5	14	100	0	70	20	28	25	25	1.99
1155191--1155221	6	5.3	6	96	3	55	12	0	0	87	0.55
1158493--1158714	110	2.0	110	98	0	426	20	15	18	45	1.85
1160693--1160857	39	4.2	39	84	3	215	24	24	27	23	2.00
1160693--1160857	78	2.1	78	87	2	242	24	24	27	23	2.00
1170441--1170470	15	2.1	15	93	6	53	13	13	6	66	1.43
1170843--1170908	28	2.4	28	78	14	73	56	4	3	36	1.35
1188706--1188832	59	2.2	58	80	12	143	31	15	10	42	1.81
1189303--1189340	20	1.9	20	94	0	67	28	15	28	26	1.96
1190385--1190590	106	1.9	106	91	0	331	26	15	16	41	1.89
1192928--1193192	134	2.0	130	96	2	485	39	15	14	30	1.87
1196490--1196554	25	2.5	26	77	5	69	49	4	0	46	1.22
1198160--1198478	53	6.0	53	96	0	575	26	15	18	39	1.90
1199206--1199505	149	2.0	149	88	0	438	27	15	18	40	1.89
1205187--1205225	17	2.4	16	84	12	53	58	7	0	33	1.26
1217864--1217888	9	2.8	9	100	0	50	8	8	0	84	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1217932--1217975	18	2.4	18	81	7	54	22	4	4	68	1.27
1217966--1218056	22	4.1	22	67	23	57	42	0	3	53	1.17
1217968--1218048	23	3.7	21	74	11	65	39	0	3	56	1.17
1218302--1218349	16	2.8	18	78	15	57	58	0	0	41	0.98
1218499--1218560	27	2.3	26	80	5	70	50	3	1	45	1.27
1218499--1218560	26	2.3	27	83	2	72	50	3	1	45	1.27
1218811--1218866	6	9.5	6	80	3	60	60	0	0	39	0.97
1223093--1223366	46	6.0	46	93	0	406	21	24	14	39	1.91
1227151--1227239	30	3.0	30	83	0	115	24	20	25	29	1.99
1229411--1229479	33	2.1	33	100	0	138	31	0	21	46	1.52
1230330--1230449	51	2.4	51	92	0	195	39	12	21	26	1.89
1233109--1233275	88	1.9	88	95	1	300	17	16	10	55	1.69
1233380--1233478	10	10.4	9	77	12	65	44	1	3	51	1.23
1233426--1233488	29	2.2	29	91	2	101	41	0	3	55	1.16
1235356--1235427	37	2.0	37	83	8	94	58	2	2	36	1.27
1235657--1235698	20	2.0	21	82	13	52	38	11	0	50	1.40
1237240--1237280	17	2.4	18	80	8	50	65	0	0	34	0.93
1239082--1239106	11	2.3	11	100	0	50	8	0	0	92	0.40
1242659--1242702	21	2.1	21	86	0	61	27	34	9	29	1.87
1244804--1244841	9	4.1	9	93	6	67	34	0	0	65	0.93
1244804--1244840	19	1.9	19	100	0	74	32	0	0	67	0.91
1248153--1248288	68	2.0	69	88	5	206	45	3	4	46	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1250271--1250303	15	2.3	15	90	10	52	51	3	0	45	1.16
1254520--1254554	15	2.2	16	90	5	54	28	2	0	68	1.04
1263881--1263922	20	2.1	20	82	8	50	52	4	11	30	1.59
1267081--1267167	39	2.2	39	93	0	147	14	22	21	40	1.91
1267097--1267161	20	3.2	21	69	20	66	13	24	20	41	1.88
1268142--1268174	17	1.9	18	88	11	52	45	0	12	42	1.41
1268165--1268208	9	4.9	9	85	0	61	43	0	4	52	1.22
1283771--1283834	28	2.4	26	76	10	67	40	7	6	45	1.58
1284414--1284493	29	2.7	30	82	3	99	30	3	16	50	1.62
1284631--1284672	20	2.0	20	86	4	57	57	0	4	38	1.20
1285194--1285325	20	6.7	20	68	18	71	37	2	2	58	1.23
1285905--1285938	13	2.5	13	90	4	50	29	0	0	70	0.87
1286341--1286432	45	2.1	41	81	15	98	19	8	8	63	1.49
1289134--1289181	18	2.6	19	77	16	55	47	0	2	50	1.12
1294223--1294247	12	2.1	12	100	0	50	68	8	0	24	1.16
1296269--1296316	20	2.5	19	83	9	62	33	0	6	60	1.22
1296269--1296318	19	2.7	18	84	9	64	32	0	8	60	1.26
1297521--1297554	15	2.3	15	94	0	59	61	5	0	32	1.20
1297521--1297558	15	2.5	15	91	4	58	60	7	0	31	1.25
1299070--1299228	79	2.0	79	98	0	309	31	16	14	37	1.89
1303004--1303030	4	6.8	4	100	0	54	51	22	0	25	1.48
1304385--1304431	21	2.2	22	92	3	78	21	38	19	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1315594--1315644	20	2.5	21	84	9	70	45	5	1	47	1.38
1322724--1322773	22	2.3	22	82	0	64	56	4	2	38	1.30
1331850--1331900	18	2.8	17	82	11	57	58	0	0	41	0.98
1332170--1332236	33	2.0	32	83	11	82	34	2	0	62	1.10
1334773--1334822	12	4.2	12	87	5	50	14	48	6	32	1.67
1334783--1334822	6	6.7	6	94	0	71	15	50	2	32	1.57
1336507--1336553	4	11.8	4	82	8	60	48	25	2	23	1.62
1338511--1338664	45	3.5	44	78	3	150	36	22	14	27	1.92
1339128--1339319	96	2.0	96	96	0	357	32	21	11	33	1.90
1339793--1339826	14	2.3	15	90	5	52	5	11	0	82	0.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187