genome.fa.s15.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  103  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30163563--30163599	16	2.3	16	90	0	56	45	8	8	37	1.63
30169541--30169603	30	2.1	29	85	5	81	65	1	1	31	1.12
30170210--30170250	19	2.2	18	86	4	55	24	2	0	73	0.96
30173602--30173648	12	3.8	12	97	2	85	76	6	0	17	0.98
30173602--30173646	13	3.5	13	93	6	83	80	6	0	13	0.91
30173687--30173728	15	2.7	15	89	10	59	64	4	9	21	1.42
30173689--30173728	16	2.5	16	88	8	55	67	5	7	20	1.34
30186366--30186403	19	2.0	19	100	0	76	21	21	31	26	1.98
30190024--30190087	17	3.8	17	71	17	53	39	0	3	57	1.14
30192997--30193040	18	2.6	17	82	10	54	40	22	9	27	1.84
30193604--30193634	16	1.9	16	93	0	53	9	9	9	70	1.33
30195230--30195310	42	1.9	42	82	9	103	45	2	2	49	1.28
30198053--30198086	18	1.9	17	94	5	59	44	0	2	52	1.16
30203330--30203418	25	3.6	24	79	13	74	31	22	26	19	1.97
30203299--30203418	50	2.4	50	81	5	127	31	20	27	20	1.97
30203352--30203429	24	3.2	24	82	8	95	32	19	30	17	1.95
30203416--30203479	25	2.6	25	82	0	83	42	20	20	17	1.90
30209449--30209503	15	3.8	14	80	7	65	74	1	21	1	1.01
30219410--30219457	25	1.9	25	86	0	69	35	20	25	18	1.95
30219465--30219526	25	2.5	25	81	0	79	38	14	25	20	1.91
30219510--30219588	27	3.1	26	77	12	83	35	20	26	17	1.95
30222398--30222474	40	1.9	41	81	7	95	45	9	2	42	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30234066--30234117	25	2.1	25	92	7	88	25	26	9	38	1.86
30238428--30238512	32	2.6	33	77	5	93	44	18	10	25	1.82
30238505--30238544	20	2.0	20	90	0	62	50	10	10	30	1.69
30238493--30238559	34	1.9	35	87	3	100	46	11	8	32	1.72
30238528--30238567	14	2.9	14	84	0	53	42	15	7	35	1.75
30239611--30239640	14	2.1	14	93	0	51	40	0	43	16	1.48
30241665--30241701	13	2.8	13	87	0	56	16	43	24	16	1.87
30242600--30242710	40	2.7	41	86	6	163	36	17	26	20	1.94
30242600--30242753	81	1.9	82	84	6	206	35	14	26	23	1.94
30242600--30242753	41	3.8	40	83	7	177	35	14	26	23	1.94
30246429--30246479	25	2.1	23	85	7	66	56	5	11	25	1.57
30251486--30251681	100	2.0	100	85	2	268	27	9	22	40	1.85
30251945--30252111	82	2.0	82	98	0	325	37	9	7	45	1.66
30261994--30262052	26	2.3	26	91	2	93	37	15	28	18	1.91
30266019--30266073	26	2.1	27	86	10	78	56	34	0	9	1.31
30266018--30266076	25	2.3	26	83	13	77	55	35	0	8	1.30
30271928--30272003	26	2.9	26	92	0	116	28	17	13	40	1.87
30272148--30272182	6	5.8	6	86	0	52	17	25	0	57	1.40
30272147--30272183	18	2.1	18	94	0	65	16	24	0	59	1.37
30285760--30285898	32	4.4	32	80	4	147	38	19	20	21	1.93
30285757--30285878	64	1.9	64	84	3	165	39	17	19	23	1.92
30286044--30286125	24	3.4	24	80	6	94	46	25	6	21	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30286044--30286152	24	4.5	24	80	6	87	44	23	6	24	1.76
30286056--30286152	48	2.0	48	82	11	119	45	23	6	24	1.76
30286191--30286353	27	6.1	26	75	11	127	22	18	19	39	1.93
30286330--30286606	27	10.3	27	77	9	192	23	18	18	39	1.92
30286171--30286349	79	2.2	80	81	7	204	22	19	20	37	1.94
30286330--30286606	54	5.1	54	80	8	273	23	18	18	39	1.92
30286321--30286597	81	3.4	80	78	8	265	23	18	18	39	1.92
30289311--30289345	4	8.8	4	93	0	52	71	0	5	22	1.07
30289460--30289503	15	3.0	15	81	15	56	75	0	0	25	0.81
30289469--30289503	5	7.0	5	87	12	54	77	0	0	22	0.78
30300242--30300319	23	3.5	22	94	5	138	20	8	26	43	1.81
30304623--30304790	47	3.6	45	70	16	130	46	2	2	47	1.33
30304549--30304756	91	2.3	91	89	0	317	46	3	3	46	1.36
30304580--30304831	91	2.6	98	75	15	236	45	3	2	48	1.31
30304587--30304731	44	3.2	44	70	16	125	46	2	2	48	1.28
30304906--30304960	25	2.2	26	81	12	71	43	1	0	54	1.10
30309420--30309607	94	2.0	94	98	0	367	36	11	17	34	1.86
30310232--30310263	15	2.1	15	94	0	55	50	0	12	37	1.41
30310879--30310949	26	2.8	26	81	10	85	15	23	22	38	1.93
30310886--30311003	24	4.8	24	77	8	103	17	23	22	35	1.95
30310886--30310992	25	4.3	24	79	10	83	17	25	22	34	1.96
30311025--30311121	25	4.0	23	68	16	70	21	28	18	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30315669--30315771	51	2.0	51	100	0	206	31	26	13	29	1.94
30323494--30323522	13	2.2	13	100	0	58	34	13	0	51	1.42
30328342--30328576	50	4.6	49	76	7	170	25	27	21	25	2.00
30330213--30330250	19	2.0	19	100	0	76	42	21	0	36	1.53
30335922--30336065	50	2.7	51	85	9	175	26	29	20	23	1.99
30345450--30345521	36	2.0	36	94	0	126	26	22	16	34	1.95
30352761--30352786	8	3.2	8	100	0	52	23	0	0	76	0.78
30352986--30353038	20	2.7	20	91	2	81	22	13	13	50	1.75
30357189--30357224	15	2.4	15	100	0	72	8	38	27	25	1.84
30360955--30361022	25	2.7	26	86	9	95	42	8	2	45	1.50
30361767--30361834	33	2.1	33	94	2	120	19	0	7	73	1.06
30362562--30362756	98	2.0	98	93	0	336	28	9	25	36	1.87
30365207--30365401	23	8.5	23	72	14	136	40	24	6	28	1.80
30367188--30368166	146	6.6	146	79	14	942	26	17	13	42	1.86
30367718--30367782	32	2.0	32	100	0	130	15	27	21	35	1.94
30367595--30367919	169	1.9	169	93	0	560	25	20	14	39	1.90
30367750--30368300	137	4.0	137	84	9	750	27	17	12	42	1.86
30367299--30368166	452	1.9	454	90	3	1404	26	17	13	41	1.87
30367449--30368033	315	1.9	308	90	3	933	25	18	14	41	1.89
30368042--30368292	125	2.0	126	95	2	452	29	17	11	42	1.84
30368494--30368704	70	3.0	70	63	19	177	42	10	3	43	1.57
30368759--30368792	14	2.4	14	90	9	52	32	44	0	23	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30368799--30368836	14	2.7	15	80	12	53	42	28	0	28	1.56
30369018--30369066	23	2.3	20	80	13	53	36	36	0	26	1.57
30369028--30369080	21	2.5	21	76	14	54	39	35	0	24	1.56
30369028--30369098	15	4.9	15	79	6	56	38	39	0	22	1.54
30369768--30369858	41	2.2	41	94	0	155	24	32	23	19	1.97
30369768--30369877	41	2.7	42	87	5	154	25	32	20	20	1.97
30376541--30376573	16	2.0	17	88	5	50	39	6	0	54	1.25
30378359--30378425	31	2.2	31	100	0	134	34	13	14	37	1.86
30381387--30381548	87	1.9	86	83	8	213	25	14	20	39	1.90
30388944--30389015	36	2.0	36	100	0	144	25	16	16	41	1.89
30390481--30390634	77	2.0	77	92	0	254	34	4	17	43	1.70
30402247--30402296	21	2.5	19	78	15	55	66	2	4	28	1.21
30402374--30402492	20	5.8	21	77	10	88	50	1	6	41	1.39
30402413--30402492	20	4.0	20	81	4	99	51	1	7	40	1.38
30402418--30402495	39	2.0	40	87	5	113	48	1	8	41	1.43
30402399--30402489	10	9.1	10	69	21	57	52	1	5	40	1.32
30409090--30409140	23	2.2	24	96	3	95	41	11	3	43	1.60
30409865--30409981	41	2.9	41	86	0	162	32	27	15	24	1.95
30411895--30412024	47	2.8	47	86	2	172	21	25	19	33	1.97
30411958--30412154	91	2.2	92	83	2	236	28	23	16	31	1.96
30413099--30413143	20	2.2	21	77	18	51	42	4	2	51	1.34
30413127--30413193	20	3.3	20	77	6	64	32	4	1	61	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30413157--30413240	10	8.7	9	69	17	53	32	3	2	61	1.25
30413148--30413211	20	3.3	19	75	14	67	28	4	1	65	1.21
30413146--30413252	50	2.1	50	81	6	128	29	4	2	62	1.29
30413187--30413252	30	2.2	28	77	15	69	28	4	3	63	1.29
30419222--30419354	48	2.8	48	88	0	194	28	18	18	33	1.95
30422120--30422181	26	2.4	25	84	7	79	43	9	19	27	1.82
30440295--30440472	24	7.2	26	76	8	106	17	24	21	36	1.94
30440354--30440420	25	2.8	24	86	4	98	20	28	20	29	1.98
30440290--30440420	26	5.2	25	78	5	113	19	25	22	33	1.97
30441899--30441929	12	2.7	11	90	9	53	64	0	3	32	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187