genome.fa.s15.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  153  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46022744--46022773	14	2.1	15	93	6	53	46	0	0	53	1.00
46023228--46023638	155	2.7	153	90	3	646	33	15	21	29	1.94
46025309--46025348	16	2.5	16	91	0	62	37	7	25	30	1.83
46034726--46034899	86	2.0	86	95	0	312	41	17	9	31	1.81
46035264--46035482	51	4.3	51	92	1	359	27	22	15	34	1.94
46039940--46039964	11	2.3	11	100	0	50	56	0	0	44	0.99
46040555--46040603	20	2.5	19	80	6	62	32	6	8	53	1.55
46043198--46043230	16	2.1	16	88	5	50	69	0	0	30	0.88
46042893--46043422	191	2.7	194	78	5	561	42	9	16	31	1.80
46043450--46043518	34	2.0	34	100	0	138	40	11	14	33	1.82
46053621--46053667	20	2.3	20	81	0	58	17	25	34	23	1.96
46053748--46053796	25	2.0	25	83	0	62	18	36	20	24	1.94
46057591--46057774	71	2.6	71	84	5	241	28	18	22	30	1.97
46057559--46057772	69	3.1	71	80	8	242	28	17	21	31	1.96
46063705--46063799	42	2.3	41	87	1	136	25	22	22	30	1.99
46072060--46072267	31	6.7	31	88	0	301	44	17	8	29	1.78
46075830--46075915	27	3.2	27	81	6	95	19	15	20	44	1.87
46082682--46082755	26	2.8	27	83	2	96	20	16	21	41	1.90
46082682--46082779	27	3.7	27	81	6	103	20	16	22	40	1.91
46089001--46089165	31	5.3	31	87	0	231	44	15	9	30	1.78
46088990--46089161	93	1.9	92	88	1	263	44	15	8	30	1.77
46092504--46092540	19	1.9	19	100	0	74	45	5	10	37	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46092962--46093032	34	2.1	34	91	0	115	33	12	5	47	1.65
46094637--46094793	77	2.0	77	90	0	242	29	15	10	44	1.79
46097180--46097204	13	1.9	13	100	0	50	84	0	0	16	0.63
46104063--46104132	27	2.5	28	80	15	90	50	17	2	30	1.60
46104063--46104194	29	4.5	31	72	15	93	46	18	5	30	1.71
46104063--46104155	29	3.3	29	78	14	95	48	20	2	29	1.61
46104701--46104742	20	2.3	19	88	12	61	28	0	4	66	1.12
46107192--46107254	18	3.5	18	77	18	60	26	3	0	69	1.03
46107194--46107253	15	3.9	14	73	26	50	28	1	0	70	0.97
46109196--46109575	50	7.6	49	65	10	196	26	21	20	31	1.98
46109119--46109630	100	5.1	100	84	1	625	25	23	20	31	1.98
46109743--46109849	50	2.1	48	77	9	106	28	25	20	26	1.99
46109870--46110008	44	3.1	44	71	8	120	28	29	18	23	1.98
46109856--46110028	88	2.0	88	88	0	256	26	27	20	25	1.99
46124938--46125030	29	3.3	29	76	14	86	48	20	3	27	1.65
46125574--46125615	20	2.3	19	88	12	61	28	0	4	66	1.12
46138228--46138289	18	3.4	19	80	6	67	30	1	0	67	1.00
46158702--46158759	28	2.1	28	84	12	75	55	5	0	39	1.22
46162117--46162575	44	10.5	44	68	11	253	31	20	23	23	1.98
46162092--46162686	132	4.5	132	90	1	892	31	21	24	23	1.98
46164716--46164762	19	2.3	21	86	13	64	38	4	4	53	1.40
46173741--46173925	79	2.3	81	84	7	236	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46173742--46173925	40	4.6	40	83	9	216	24	22	27	25	2.00
46173794--46173958	79	2.1	79	84	6	210	26	21	27	25	1.99
46175579--46175630	27	1.9	27	84	7	70	46	0	7	46	1.31
46175579--46175637	27	2.2	27	81	6	66	45	0	8	45	1.33
46179090--46179280	51	3.8	50	81	3	213	29	26	16	26	1.97
46179093--46179280	102	1.9	101	85	3	261	29	26	16	27	1.97
46187850--46187955	53	2.0	53	98	0	203	33	19	5	40	1.75
46188852--46188904	3	17.7	3	100	0	106	33	32	0	33	1.58
46190476--46190518	22	2.0	21	100	0	77	13	37	13	32	1.85
46191349--46191389	13	3.2	13	75	25	50	2	31	19	46	1.63
46191515--46191539	12	2.1	12	100	0	50	16	16	16	52	1.76
46194817--46195055	72	3.3	72	89	1	347	25	4	14	55	1.58
46196465--46196490	12	2.2	12	100	0	52	26	7	42	23	1.81
46197107--46197170	13	4.9	13	86	0	83	34	26	6	32	1.82
46203462--46203513	22	2.3	23	74	9	54	53	1	0	44	1.11
46203461--46203497	19	1.9	19	88	0	56	59	2	0	37	1.12
46213172--46213208	16	2.4	15	91	8	65	10	2	0	86	0.67
46213610--46213684	12	6.2	12	78	9	71	29	2	2	65	1.20
46213650--46213688	3	13.0	3	100	0	78	33	0	0	66	0.92
46213686--46213730	4	11.2	4	95	0	81	22	24	2	51	1.60
46220593--46221987	129	10.8	129	92	1	2104	32	19	23	24	1.98
46220593--46221969	514	2.7	514	90	1	2125	32	19	23	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46221975--46222270	85	3.4	85	73	7	281	28	17	23	30	1.97
46222104--46222269	44	3.8	44	74	4	142	30	16	21	31	1.95
46223011--46223041	16	1.9	16	93	0	53	61	0	3	35	1.12
46223174--46223469	128	2.3	129	84	5	377	31	19	22	25	1.98
46223585--46223746	44	3.8	44	74	4	125	29	17	21	31	1.96
46224493--46224523	16	1.9	16	93	0	53	61	0	3	35	1.12
46224670--46224703	5	6.8	5	90	10	52	0	14	2	82	0.79
46224654--46224697	9	4.8	9	81	13	54	2	11	2	84	0.81
46224654--46224703	14	3.5	14	78	15	50	2	12	4	82	0.90
46225182--46225224	3	14.0	3	95	4	77	32	2	0	65	1.06
46228256--46228295	17	2.4	17	78	0	53	35	22	15	27	1.94
46233086--46233119	17	2.0	18	88	11	54	41	11	0	47	1.40
46240617--46240694	39	2.0	39	100	0	156	35	15	2	46	1.60
46240761--46240863	51	2.0	51	98	0	197	32	13	10	43	1.78
46242396--46242462	32	2.2	32	82	15	79	23	10	5	59	1.52
46242499--46242623	63	2.0	63	98	0	241	38	11	6	44	1.66
46254403--46254444	19	2.4	17	81	14	50	57	9	4	28	1.51
46259554--46259592	20	2.0	20	84	0	51	25	5	0	69	1.09
46259971--46260010	19	2.0	20	85	4	55	32	5	10	52	1.56
46260251--46260447	98	2.0	98	96	0	367	28	9	24	37	1.87
46265515--46266218	132	5.3	132	93	0	1097	28	19	23	28	1.98
46265596--46265939	44	7.8	45	66	7	132	29	18	23	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46266191--46266530	44	7.8	44	72	10	218	30	19	21	28	1.97
46265515--46266311	396	2.0	396	84	2	1039	29	19	23	27	1.98
46267912--46267956	20	2.2	20	80	0	54	40	6	0	53	1.27
46268593--46268788	97	2.0	98	92	1	331	28	9	24	37	1.87
46268609--46268788	98	1.9	95	92	1	270	27	9	25	37	1.87
46284853--46284893	20	2.0	20	85	4	55	68	0	4	26	1.10
46289230--46289255	9	2.9	9	100	0	52	30	34	0	34	1.58
46294990--46295028	18	2.1	19	90	4	62	33	5	7	53	1.51
46294997--46295040	18	2.4	18	84	3	52	36	6	6	50	1.56
46296536--46296613	41	1.9	41	83	0	102	38	25	17	17	1.92
46296590--46296711	38	3.2	38	86	3	158	32	31	22	13	1.93
46304429--46304606	27	6.6	27	83	3	205	26	15	28	29	1.96
46304430--46304585	82	1.9	81	88	3	233	26	15	28	29	1.96
46304426--46304606	82	2.2	81	83	2	229	27	15	27	29	1.96
46320528--46320556	13	2.2	13	100	0	58	48	17	6	27	1.72
46321087--46321115	13	2.2	13	100	0	58	48	17	6	27	1.72
46320417--46321535	559	2.0	559	99	0	2229	37	21	13	28	1.90
46327066--46327108	12	3.8	12	81	12	63	74	2	0	23	0.93
46327065--46327110	22	2.1	22	100	0	92	71	6	0	21	1.08
46327662--46327855	101	1.9	100	82	3	237	39	6	17	36	1.76
46329434--46329496	32	2.0	32	84	6	83	61	4	9	23	1.45
46330974--46331036	32	2.0	32	84	6	83	61	4	9	23	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46334238--46334296	31	1.9	31	92	0	100	40	5	6	47	1.52
46341474--46341885	125	3.3	125	91	0	655	33	17	19	29	1.95
46345091--46345456	49	7.5	49	96	0	651	45	8	2	43	1.49
46345184--46345267	29	3.2	29	62	28	78	45	9	2	42	1.49
46347737--46347785	22	2.2	22	82	10	64	48	0	28	22	1.50
46347737--46347785	11	4.5	10	78	16	53	48	0	28	22	1.50
46364148--46364276	69	1.9	69	90	1	206	40	4	4	50	1.44
46364176--46364279	32	3.1	32	70	13	84	40	3	6	49	1.48
46375051--46375142	42	2.2	42	82	0	103	23	31	21	22	1.98
46375652--46376046	197	2.0	196	97	0	745	38	18	17	25	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187