genome.fa.s15.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  145  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43729846--43729880	16	2.1	17	89	5	54	42	11	0	45	1.40
43738454--43738481	14	2.0	14	100	0	56	7	28	0	64	1.20
43738542--43738575	17	2.0	17	88	0	50	5	5	17	70	1.28
43738542--43738583	6	7.2	6	91	5	50	4	9	19	66	1.38
43741078--43741398	47	6.7	47	91	3	439	28	29	8	33	1.86
43741078--43741398	96	3.4	96	88	6	501	28	29	8	33	1.86
43741105--43741398	143	2.1	142	90	5	468	27	29	9	33	1.88
43746271--43746308	18	2.2	17	90	4	58	34	2	0	63	1.09
43746393--43746546	18	8.9	18	66	18	76	42	0	2	54	1.19
43746172--43746936	120	6.3	120	92	4	1214	42	1	4	51	1.30
43747076--43747171	45	2.2	44	88	5	140	37	28	4	30	1.76
43754570--43754595	13	2.0	13	100	0	52	30	7	23	38	1.83
43757639--43757676	18	2.1	18	100	0	76	23	18	21	36	1.95
43761658--43761704	10	4.5	10	78	17	51	10	8	14	65	1.45
43763534--43763615	35	2.4	34	83	8	103	43	17	6	32	1.73
43765648--43765702	21	2.6	21	82	0	65	38	30	3	27	1.74
43771145--43771253	41	2.7	41	88	1	157	22	21	24	31	1.98
43771654--43771686	14	2.3	15	94	5	59	30	0	33	36	1.58
43771696--43771922	120	1.9	121	84	4	307	28	2	28	40	1.68
43774189--43774222	17	2.0	17	100	0	68	29	11	29	29	1.92
43776449--43776548	42	2.4	42	93	3	166	28	11	7	54	1.61
43789448--43789484	19	1.9	19	94	0	65	29	18	0	51	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43790877--43790909	15	2.2	15	94	0	57	36	15	9	39	1.79
43792039--43792075	19	1.9	19	94	0	65	29	21	0	48	1.50
43801613--43801656	20	2.2	20	92	4	72	6	9	4	79	1.04
43801855--43801894	20	2.0	20	85	9	55	22	5	0	72	1.04
43802848--43802878	16	1.9	16	93	0	53	45	3	9	41	1.53
43807277--43807313	12	3.2	12	82	17	51	45	2	0	51	1.15
43807277--43807305	13	2.3	13	94	5	51	51	3	0	44	1.18
43808569--43808597	14	2.0	15	93	6	51	62	0	20	17	1.33
43814343--43814400	30	1.9	30	100	0	116	36	15	13	34	1.87
43832648--43832672	10	2.5	10	100	0	50	68	8	0	24	1.16
43833609--43833726	40	3.0	40	86	1	148	15	17	28	38	1.90
43833607--43833725	39	3.0	39	85	1	148	15	17	27	39	1.90
43837336--43837523	50	3.7	51	79	1	182	28	27	17	27	1.98
43845294--43845355	31	2.0	31	100	0	124	32	9	16	41	1.80
43845992--43846019	12	2.3	12	100	0	56	25	0	0	75	0.81
43852291--43852315	12	2.1	12	100	0	50	40	36	16	8	1.77
43859470--43859502	12	2.6	13	90	9	59	30	33	6	30	1.82
43859613--43859672	30	2.0	30	96	0	111	25	3	15	56	1.54
43866504--43866737	51	4.6	51	78	3	240	35	8	18	37	1.80
43866504--43866744	102	2.4	102	82	3	272	36	8	17	37	1.80
43866551--43866662	27	4.4	26	70	17	65	39	8	16	36	1.78
43871591--43871964	202	1.9	202	97	0	703	31	14	27	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43871984--43872089	53	2.0	53	90	0	167	33	12	26	27	1.92
43872294--43872363	32	2.2	32	86	0	95	28	15	24	31	1.96
43880057--43880243	9	19.1	10	70	18	110	58	1	1	37	1.17
43880047--43880243	20	10.1	19	71	18	120	59	1	1	37	1.16
43880043--43880133	30	3.1	29	69	12	78	60	1	0	38	1.04
43880057--43880104	10	4.6	11	85	12	66	58	0	0	41	0.98
43880165--43880262	20	4.9	20	80	8	101	53	2	4	40	1.32
43880028--43880243	40	5.5	40	73	11	162	59	1	1	37	1.17
43880538--43880759	43	4.9	43	72	13	192	45	11	9	32	1.74
43880559--43880764	99	2.1	99	92	0	340	45	12	8	33	1.73
43883014--43883108	42	2.3	42	86	0	145	29	25	16	28	1.97
43883949--43883977	11	2.7	11	94	5	51	0	20	0	79	0.74
43883946--43883977	16	1.9	17	93	6	57	0	21	0	78	0.76
43889571--43889622	17	3.0	17	73	15	52	25	9	1	63	1.35
43889619--43889674	10	5.4	10	74	21	53	33	5	0	60	1.19
43889606--43889674	30	2.2	32	87	5	106	33	5	0	60	1.20
43889470--43889673	20	10.9	19	69	20	112	32	7	0	58	1.32
43889619--43889674	21	2.7	22	76	20	66	33	5	0	60	1.19
43889738--43889909	93	1.8	94	87	1	256	29	11	23	35	1.90
43893950--43894041	31	3.0	31	83	3	105	35	15	7	41	1.75
43909089--43909280	50	3.8	50	81	3	208	27	17	27	28	1.97
43916998--43917043	14	3.2	15	75	9	51	26	0	8	65	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43919462--43919671	40	5.3	39	89	4	242	25	21	27	25	1.99
43919409--43919671	120	2.2	120	82	4	309	25	21	27	25	1.99
43919410--43919706	80	3.7	80	81	6	230	26	21	27	24	1.99
43926177--43926359	40	4.6	39	81	6	170	24	20	27	26	1.99
43926213--43926394	79	2.3	80	79	3	190	26	20	27	25	1.99
43928563--43928599	9	4.1	9	92	0	65	45	13	10	29	1.77
43928782--43928843	30	2.1	31	84	6	83	20	33	0	45	1.52
43929968--43930027	25	2.4	25	100	0	120	33	16	10	40	1.82
43935061--43935113	18	2.9	18	80	2	61	41	45	1	11	1.51
43935217--43935256	9	4.4	9	87	0	62	27	10	20	42	1.83
43939660--43939687	13	2.2	13	100	0	56	32	17	35	14	1.90
43941420--43941555	50	2.7	51	86	4	195	25	15	27	31	1.96
43942044--43942068	10	2.5	10	100	0	50	64	0	8	28	1.22
43947172--43947395	29	7.8	29	89	2	335	28	23	11	36	1.90
43947169--43947395	57	3.9	58	90	1	341	28	23	11	37	1.89
43947171--43947395	86	2.6	86	90	3	337	28	23	11	36	1.90
43947172--43947395	115	1.9	115	90	1	351	28	23	11	36	1.90
43951648--43951755	23	5.0	22	84	7	132	37	24	21	17	1.94
43952824--43952873	3	16.7	3	85	8	66	60	2	0	38	1.09
43953031--43953067	16	2.3	17	81	13	51	48	0	0	51	1.00
43957517--43957896	187	2.0	188	96	0	708	26	23	18	31	1.97
43959398--43959512	23	5.0	23	93	2	187	39	20	20	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43960547--43960581	17	2.1	17	94	0	61	2	14	5	77	1.07
43960570--43960598	14	2.1	14	93	6	51	13	10	0	75	1.04
43960802--43960838	16	2.3	17	81	13	51	48	0	0	51	1.00
43963528--43964568	515	2.0	523	85	3	1409	30	19	10	39	1.86
43966625--43967374	39	19.5	39	73	7	393	21	23	15	39	1.92
43966619--43967374	78	9.8	78	76	5	478	21	23	15	39	1.92
43966625--43967374	117	6.5	116	74	7	481	21	23	15	39	1.92
43967095--43967371	148	1.9	148	81	1	340	20	24	15	39	1.91
43967281--43967386	39	2.7	38	82	4	115	23	22	14	39	1.91
43968489--43968513	13	1.9	13	100	0	50	32	16	16	36	1.90
43970103--43970225	47	2.6	47	83	2	140	31	9	32	26	1.89
43970348--43970426	37	2.1	37	90	0	122	24	18	31	25	1.98
43980141--43980172	16	2.0	16	93	0	55	21	25	34	18	1.96
43988098--43988165	25	2.8	24	80	6	82	38	22	11	27	1.89
43989921--43990052	28	4.7	28	82	3	158	25	23	9	40	1.85
43989921--43990052	56	2.4	56	85	2	176	25	23	9	40	1.85
43991464--43991514	25	2.0	25	85	7	68	45	13	1	39	1.55
43998793--43998954	41	3.9	41	89	1	234	20	28	16	35	1.94
43998793--43998954	83	2.0	82	88	1	243	20	28	16	35	1.94
44006360--44006411	16	3.2	16	94	0	86	28	0	36	34	1.58
44006392--44006501	45	2.6	43	80	9	129	33	5	29	31	1.80
44006560--44006604	16	2.8	16	83	16	65	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44006568--44006784	117	1.8	120	91	5	361	51	5	2	41	1.36
44029323--44029386	25	2.6	25	80	9	69	17	26	20	35	1.94
44029425--44029493	25	2.7	25	84	2	75	31	23	14	30	1.94
44029446--44029495	25	2.0	25	92	4	82	28	24	18	30	1.97
44037675--44038402	69	10.5	70	74	6	385	22	20	20	36	1.95
44037790--44038402	138	4.4	138	77	1	496	23	20	19	36	1.95
44037718--44038400	344	2.0	347	78	4	727	22	20	19	36	1.95
44044959--44045010	4	12.5	4	81	6	59	65	1	7	25	1.30
44047038--44047264	44	5.2	44	71	16	191	27	26	21	25	1.99
44047008--44047312	88	3.5	88	94	0	531	24	25	22	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187