genome.fa.s15.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  57  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16963727--16963808	31	2.6	32	84	9	105	35	6	6	52	1.51
16963727--16963808	34	2.6	31	86	7	94	35	6	6	52	1.51
16975176--16975272	25	3.9	26	78	8	105	21	28	15	34	1.94
16975231--16975300	25	2.8	25	84	6	79	22	24	20	32	1.97
16980919--16980949	16	2.0	16	93	6	55	32	19	16	32	1.94
16986755--16986788	16	2.1	16	88	0	50	41	23	20	14	1.89
16986853--16986966	46	2.5	46	76	4	122	35	17	25	21	1.95
16988052--16988112	27	2.3	27	97	0	113	14	36	31	18	1.91
16988415--16988500	40	2.3	36	80	13	93	32	5	9	52	1.57
16994544--16995404	284	3.0	285	93	1	1512	30	11	6	51	1.63
16995733--16995817	42	2.0	42	100	0	170	44	10	2	42	1.51
16995864--16995928	5	13.4	5	72	6	53	0	32	0	67	0.91
16995866--16995928	10	6.5	10	77	14	69	0	31	0	68	0.90
16995872--16995934	14	4.6	14	71	13	51	0	28	0	71	0.86
16995840--16995947	38	2.7	40	79	16	125	0	31	0	67	0.97
16995866--16995928	28	2.2	30	83	11	78	0	31	0	68	0.90
16995992--16996056	27	2.4	27	84	0	85	18	32	30	18	1.95
16997669--16997708	19	2.1	19	86	9	55	32	7	0	60	1.25
17002676--17002706	15	2.1	15	93	0	53	70	12	3	12	1.27
17004056--17004898	44	19.1	44	79	3	708	30	13	24	31	1.94
17004058--17004634	134	4.3	134	88	1	743	29	14	25	30	1.94
17004901--17005013	44	2.6	44	82	2	129	27	18	21	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17006565--17006602	19	2.1	18	90	5	58	34	5	0	60	1.19
17012501--17012552	22	2.3	20	76	20	50	40	7	0	51	1.30
17015637--17015713	33	2.3	33	86	4	102	31	14	40	14	1.85
17015655--17015738	33	2.5	33	83	7	100	28	11	41	17	1.85
17015851--17015888	12	3.2	12	96	0	67	0	36	36	26	1.57
17015848--17015885	18	2.1	18	95	0	67	0	42	31	26	1.56
17015851--17015888	6	6.3	6	90	0	58	0	36	36	26	1.57
17018179--17018309	66	2.0	66	98	0	253	34	23	6	35	1.80
17018205--17018308	32	3.2	32	65	24	90	32	27	4	34	1.78
17018552--17018619	35	1.9	35	93	0	118	60	8	5	25	1.49
17018976--17019034	27	2.2	27	93	0	100	20	25	25	28	1.99
17022570--17022605	18	2.0	18	100	0	72	11	50	11	27	1.72
17025836--17025885	24	2.1	24	100	0	100	24	30	30	16	1.96
17029726--17029789	30	2.2	31	80	11	80	28	0	3	68	1.04
17031856--17031942	32	2.8	30	79	10	79	48	11	2	37	1.52
17032526--17032555	11	2.7	11	89	0	51	0	10	0	90	0.47
17035600--17035637	17	2.3	17	86	4	51	15	0	2	81	0.80
17043376--17043513	42	3.2	42	72	14	138	26	25	22	26	2.00
17043359--17043593	86	2.7	86	89	3	337	29	21	23	25	1.99
17043369--17043759	89	4.5	87	76	8	339	29	21	23	25	1.99
17043861--17044147	44	6.7	44	77	10	279	27	18	27	26	1.98
17043860--17044147	126	2.2	126	84	7	348	27	18	27	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17044460--17044571	44	2.6	43	86	2	152	31	20	17	30	1.96
17044880--17045133	44	5.8	43	74	14	198	31	19	23	25	1.98
17060574--17060635	28	2.2	28	97	0	115	30	17	6	45	1.74
17060602--17060686	43	2.0	43	97	0	161	29	22	4	43	1.73
17065607--17065662	26	2.4	24	75	24	57	60	7	1	30	1.33
17068316--17068392	22	3.4	22	67	19	68	35	2	25	36	1.70
17068311--17068405	46	2.1	46	100	0	190	33	2	23	41	1.66
17069059--17069262	101	2.0	101	97	0	381	33	14	27	24	1.94
17072990--17073066	22	3.4	22	67	19	68	35	2	25	36	1.70
17072985--17073079	46	2.1	46	100	0	190	33	2	23	41	1.66
17076368--17076416	3	16.3	3	100	0	98	32	0	0	67	0.91
17076750--17076781	2	16.0	2	93	0	55	46	0	3	50	1.17
17079160--17079265	53	2.0	53	90	0	167	23	16	26	33	1.96
17087554--17087601	21	2.3	20	76	13	53	27	25	0	47	1.52
17090779--17090834	25	2.4	21	77	16	58	3	8	8	78	1.07
17091616--17091778	67	2.4	66	81	8	179	22	21	20	34	1.96
17099258--17099297	21	1.9	21	84	0	53	65	2	0	32	1.06
17108656--17108691	16	2.2	17	90	5	56	83	5	0	11	0.80
17112943--17113019	39	2.0	39	84	5	102	29	3	18	48	1.66
17113051--17113097	20	2.3	20	88	0	67	19	0	51	29	1.47
17113278--17113343	7	10.0	7	76	12	59	27	0	37	34	1.57
17113314--17113338	13	1.9	13	100	0	50	16	0	52	32	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17114579--17114606	7	4.0	7	100	0	56	14	0	14	71	1.15
17118427--17118502	33	2.3	33	93	0	125	38	15	40	5	1.70
17118439--17118499	12	5.3	12	69	11	56	39	16	39	4	1.70
17120308--17120428	44	2.8	43	79	9	115	30	26	16	26	1.97
17122846--17122871	5	5.2	5	100	0	52	19	0	0	80	0.71
17124571--17124720	7	20.4	7	67	13	52	37	42	2	17	1.63
17124574--17124699	36	3.4	37	92	4	209	34	45	3	16	1.64
17124644--17124726	21	3.8	21	76	12	69	38	39	1	20	1.60
17124935--17125284	114	3.1	113	86	1	484	27	26	20	26	1.99
17125183--17125357	73	2.4	72	85	5	228	24	24	21	29	1.99
17139406--17139480	24	3.2	24	64	21	59	33	9	24	33	1.87
17139908--17139973	29	2.4	26	82	10	78	71	9	10	9	1.32
17140343--17140375	7	4.7	7	100	0	66	87	0	0	12	0.53
17140382--17140421	21	1.9	21	90	10	64	70	0	15	15	1.18
17141644--17142233	87	6.8	87	89	0	865	29	21	23	25	1.99
17141644--17142233	175	3.4	174	88	1	867	29	21	23	25	1.99
17141644--17142225	262	2.2	262	92	0	950	29	21	23	25	1.99
17143788--17143851	21	2.9	20	84	15	74	28	6	3	62	1.34
17148847--17148877	16	1.9	16	93	0	53	83	0	16	0	0.64
17149278--17149353	30	2.6	29	79	4	82	51	3	7	36	1.50
17152779--17152824	19	2.6	18	93	6	76	54	0	4	41	1.20
17154855--17154889	18	1.9	18	88	11	54	65	22	5	5	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17164463--17164490	8	3.5	8	100	0	56	50	0	10	39	1.37
17167233--17167289	25	2.3	25	79	11	71	28	21	24	26	1.99
17177865--17178068	75	2.7	75	83	0	228	46	19	3	30	1.68
17181173--17181215	18	2.4	18	80	7	52	46	0	2	51	1.13
17181577--17181612	18	1.9	19	88	5	56	38	0	27	33	1.57
17182475--17182513	18	2.2	18	100	0	78	30	0	33	35	1.58
17196986--17197046	21	2.8	21	73	9	52	52	6	6	34	1.53
17201431--17201493	31	2.0	31	90	6	101	50	9	19	20	1.74
17205527--17205557	5	6.2	5	100	0	62	38	41	0	19	1.51
17209246--17209271	7	3.7	7	100	0	52	0	11	0	88	0.52
17209825--17209921	40	2.5	40	80	9	101	35	18	22	23	1.96
17209974--17210081	41	2.7	41	89	1	164	18	19	31	30	1.96
17210393--17210502	14	7.7	14	75	3	85	20	0	32	45	1.58
17210406--17210503	43	2.3	41	82	8	115	22	1	33	42	1.60
17210489--17210536	20	2.3	22	82	10	64	29	2	31	37	1.69
17210428--17210522	7	13.4	7	74	10	68	22	2	31	44	1.64
17210480--17210599	7	17.3	7	71	12	52	24	1	37	36	1.65
17210709--17210750	16	2.5	17	92	7	68	54	0	0	45	0.99
17216386--17216442	23	2.5	24	80	8	64	40	1	1	56	1.20
17216473--17216524	26	2.0	26	92	0	86	36	19	11	32	1.87
17216551--17216750	43	4.7	43	87	0	276	28	17	27	27	1.98
17218012--17218090	38	2.1	38	83	9	99	32	16	13	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17222875--17222941	36	1.9	34	81	6	80	53	2	7	35	1.44
17223637--17223699	19	3.3	19	75	18	60	44	0	28	26	1.55
17229408--17229502	45	2.1	45	92	0	163	26	18	24	30	1.98
17236930--17236994	30	2.2	30	100	0	130	70	6	3	20	1.22
17236931--17236982	14	3.2	18	65	30	53	69	5	3	21	1.26
17237294--17237361	36	1.9	34	82	11	84	54	2	11	30	1.51
17237496--17237555	3	20.3	3	75	21	56	63	3	1	31	1.20
17238940--17239173	128	1.8	128	85	1	326	29	21	20	28	1.98
17239094--17239392	44	6.9	42	74	9	192	27	21	19	30	1.98
17239740--17239948	44	4.8	44	81	6	237	28	25	18	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187