genome.fa.s15.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  107  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31373833--31373871	8	4.5	8	82	17	51	74	0	0	25	0.82
31373833--31373871	19	2.1	19	100	0	78	74	0	0	25	0.82
31373838--31373864	11	2.5	11	100	0	54	74	0	0	25	0.83
31375222--31375361	40	3.5	40	75	11	137	33	25	15	25	1.95
31376261--31376313	22	2.5	22	88	11	76	22	5	0	71	1.06
31376279--31376335	29	2.0	28	82	3	69	33	3	0	63	1.12
31377879--31377942	33	2.0	34	84	9	89	43	20	10	25	1.84
31382776--31382842	32	2.1	33	82	2	82	25	2	23	47	1.66
31382273--31383505	412	3.0	412	97	0	2316	28	10	18	42	1.84
31383188--31383254	32	2.1	33	82	2	82	25	2	23	47	1.66
31388734--31388778	18	2.6	17	82	6	56	82	4	4	8	0.94
31392480--31392557	27	2.9	26	72	14	68	41	25	15	17	1.89
31394399--31394616	97	2.2	96	82	7	244	42	3	4	50	1.37
31394399--31394588	97	1.9	97	85	4	256	43	3	3	49	1.36
31394766--31394820	28	2.0	28	86	13	78	41	0	0	58	0.98
31400210--31400246	16	2.3	16	95	0	65	27	0	32	40	1.57
31405769--31405810	22	2.0	21	95	4	75	47	9	35	7	1.64
31407146--31407178	13	2.7	13	90	9	52	36	12	15	36	1.84
31407912--31408409	51	9.8	51	74	5	434	29	15	26	28	1.96
31407912--31408355	102	4.4	102	97	0	816	29	15	26	28	1.96
31408600--31408672	37	1.9	38	86	2	103	42	2	23	31	1.68
31411652--31411724	28	2.6	28	80	0	83	26	15	24	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31414092--31414136	18	2.5	18	92	0	81	55	0	44	0	0.99
31414096--31414136	6	6.8	6	97	0	73	53	0	46	0	1.00
31428059--31428087	13	2.1	14	93	6	51	0	27	13	58	1.36
31431253--31431295	22	2.0	22	100	0	86	48	4	13	32	1.63
31437129--31437234	53	2.0	53	94	0	185	24	19	26	29	1.99
31440418--31440452	15	2.2	16	90	5	54	45	11	14	28	1.79
31448741--31448767	9	3.0	9	100	0	54	22	11	44	22	1.84
31449199--31449303	35	3.0	34	81	4	120	31	21	22	23	1.98
31457039--31457109	25	2.8	25	82	4	72	25	25	19	29	1.99
31460349--31460426	29	2.7	28	84	11	104	25	14	30	29	1.94
31460379--31460706	174	1.9	174	96	0	602	29	14	24	30	1.95
31472132--31472170	18	2.2	18	85	0	51	12	23	2	61	1.43
31474500--31474559	22	2.7	23	73	19	63	66	6	0	26	1.16
31474509--31474542	4	8.0	4	90	9	50	73	2	0	23	0.97
31476417--31476476	18	3.4	17	79	9	57	6	18	3	71	1.22
31477401--31477435	14	2.5	14	95	0	61	20	8	0	71	1.11
31477477--31477523	12	3.9	12	88	8	69	14	6	10	68	1.38
31486048--31486119	37	1.9	37	97	0	135	20	22	2	54	1.58
31486158--31486196	13	2.8	14	80	11	53	71	7	10	10	1.30
31487288--31487356	15	4.7	15	71	15	54	63	4	2	28	1.28
31488901--31488962	32	1.9	32	93	0	106	30	9	22	37	1.86
31489888--31489948	29	2.1	28	82	11	70	32	11	18	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31491454--31491852	68	5.9	68	83	4	428	22	23	18	35	1.96
31493569--31493604	17	2.1	17	100	0	72	27	13	0	58	1.36
31493575--31493613	17	2.3	17	86	0	51	30	15	2	51	1.57
31497762--31497825	33	1.9	33	93	0	110	32	20	29	17	1.95
31498870--31498900	5	6.0	5	92	7	53	19	3	0	77	0.90
31501617--31501689	30	2.4	30	83	0	101	16	32	30	20	1.95
31502170--31502200	16	2.0	15	93	6	53	25	25	19	29	1.99
31510770--31510812	17	2.6	16	88	7	59	55	0	0	44	0.99
31513885--31514013	49	2.6	49	90	0	213	20	2	13	62	1.42
31513935--31514006	16	4.4	16	68	16	58	23	1	9	65	1.31
31516484--31516546	33	1.9	33	83	0	81	19	46	14	20	1.84
31516804--31517040	49	4.9	48	89	3	325	45	11	11	31	1.77
31518205--31518243	15	2.5	16	91	4	62	25	35	0	38	1.56
31518205--31518243	8	5.0	8	87	6	62	25	35	0	38	1.56
31519364--31519420	21	2.8	20	81	5	78	21	29	17	31	1.96
31521072--31521141	27	2.6	27	83	0	86	24	28	27	20	1.99
31522566--31522732	88	1.9	87	90	1	262	40	12	15	31	1.85
31526580--31526610	14	2.1	15	94	5	55	48	16	0	35	1.46
31527743--31527810	30	2.3	30	87	5	93	50	19	7	23	1.72
31528050--31528077	3	9.3	3	100	0	56	0	32	0	67	0.91
31530146--31530230	38	2.2	39	89	4	127	36	1	8	54	1.38
31531855--31531963	34	3.2	34	85	6	132	45	0	13	40	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31532014--31532334	126	2.6	126	89	0	473	38	15	16	29	1.90
31532353--31532622	126	2.2	125	91	2	443	35	18	15	29	1.93
31532137--31532546	216	1.9	216	91	1	669	37	15	16	30	1.90
31535872--31535912	21	2.0	21	90	0	64	7	17	43	31	1.76
31536108--31536143	18	2.0	18	94	0	63	41	5	27	25	1.77
31539747--31539794	22	2.2	21	85	10	62	64	0	0	35	0.94
31539780--31539805	13	2.0	13	100	0	52	76	0	0	23	0.78
31545334--31545393	31	1.9	31	100	0	120	26	23	13	36	1.92
31545609--31545637	14	2.1	14	93	6	51	20	6	20	51	1.70
31546237--31546533	87	3.5	86	77	12	240	40	13	13	33	1.83
31546134--31546486	87	4.1	87	74	12	221	43	11	11	33	1.77
31549401--31549453	19	2.7	19	83	13	72	54	9	1	33	1.43
31549406--31549453	20	2.5	18	87	12	69	54	8	0	37	1.31
31549406--31549507	19	5.4	19	73	14	59	50	7	0	41	1.31
31549485--31549553	30	2.4	29	79	13	79	65	2	2	28	1.22
31549504--31549551	9	5.0	9	80	7	51	70	2	4	22	1.15
31549642--31549673	16	2.0	16	93	0	55	40	6	6	46	1.54
31551899--31551990	17	4.9	18	68	20	64	50	2	2	45	1.26
31551907--31551962	26	2.2	25	81	9	67	50	1	3	44	1.29
31551945--31551990	15	2.8	17	77	12	60	52	2	0	45	1.13
31552520--31552545	13	2.0	13	100	0	52	69	0	0	30	0.89
31552786--31552822	11	3.5	11	78	14	51	24	18	0	56	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31552786--31552828	20	2.2	20	95	0	77	25	18	0	55	1.42
31554954--31554981	14	2.0	14	100	0	56	35	14	14	35	1.86
31556877--31556953	14	5.0	15	71	20	52	42	15	9	32	1.78
31556893--31556932	20	2.0	20	90	0	62	50	12	10	27	1.72
31556881--31556947	34	1.9	35	90	3	109	46	13	8	31	1.74
31556916--31556955	14	2.9	14	84	0	53	42	17	7	32	1.77
31563776--31564066	73	4.0	73	98	0	548	23	21	17	37	1.94
31564217--31564246	12	2.5	12	100	0	60	50	0	6	43	1.28
31568717--31568748	15	2.1	15	94	0	55	21	6	3	68	1.26
31571874--31571944	37	2.0	35	83	10	90	40	2	2	53	1.30
31579555--31579666	25	4.5	25	69	11	77	20	24	18	36	1.95
31590592--31590630	18	2.2	18	85	0	51	15	28	35	20	1.93
31592531--31592559	8	3.6	8	100	0	58	62	0	24	13	1.32
31600985--31601022	18	2.2	18	86	13	53	47	21	5	26	1.71
31602778--31602834	19	3.0	19	84	0	60	45	7	0	47	1.30
31604043--31604071	12	2.3	13	94	5	51	20	6	6	65	1.40
31612901--31612938	19	2.0	20	84	5	51	23	5	13	57	1.56
31614859--31615102	43	5.7	43	89	0	335	29	28	18	23	1.97
31619789--31620040	41	6.2	41	86	0	308	29	29	18	21	1.97
31621515--31621544	16	1.9	15	93	6	51	63	3	0	33	1.11
31621703--31621735	16	1.9	18	88	11	52	66	0	12	21	1.23
31623658--31623781	20	6.2	20	73	9	83	40	13	7	38	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31623666--31623780	60	1.9	60	84	7	153	40	13	6	39	1.72
31626469--31626601	71	1.9	71	88	3	205	21	5	27	45	1.73
31640697--31640725	5	5.8	5	100	0	58	37	0	20	41	1.53
31646602--31646682	35	2.3	35	100	0	162	29	9	22	38	1.86
31649029--31649098	27	2.6	27	77	4	79	17	31	12	38	1.87
31661211--31661239	12	2.3	13	94	5	51	62	17	0	20	1.33
31670360--31670401	19	2.2	20	91	4	68	21	9	16	52	1.72
31670481--31670523	18	2.4	18	96	0	77	46	2	0	51	1.13
31676332--31676395	31	2.1	31	93	0	110	57	9	6	26	1.54
31679287--31679329	18	2.4	18	92	0	68	48	0	2	48	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187