genome.fa.s15.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  39  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11391743--11391784	22	1.9	22	90	0	66	45	26	14	14	1.83
11393455--11393510	29	1.9	29	100	0	112	42	1	21	33	1.63
11394364--11394409	16	2.9	16	81	12	51	63	0	2	34	1.07
11395491--11395530	19	2.0	21	85	9	57	37	10	10	42	1.72
11399613--11399810	52	3.9	52	87	7	309	34	15	22	27	1.94
11399599--11399821	98	2.3	98	99	0	437	34	14	22	27	1.94
11399665--11399820	46	3.3	46	85	10	231	35	14	21	28	1.92
11399784--11399893	37	3.0	37	89	2	170	35	15	23	25	1.94
11402301--11402340	15	2.8	14	88	7	62	67	7	17	7	1.38
11402768--11402860	25	3.8	25	72	4	73	36	18	25	19	1.94
11407738--11407807	23	3.0	23	91	0	113	42	15	2	38	1.62
11407933--11408037	40	2.7	40	78	1	122	38	20	19	21	1.94
11408100--11408419	41	7.8	41	91	0	514	20	22	27	29	1.99
11412637--11412712	38	2.0	37	87	2	107	22	18	23	35	1.96
11417002--11417126	61	2.0	61	82	0	151	40	16	6	36	1.74
11418208--11418387	61	2.9	61	80	6	184	37	3	16	41	1.67
11420550--11420576	13	2.1	13	100	0	54	14	14	14	55	1.70
11423915--11424070	45	3.5	45	80	6	140	24	21	14	39	1.91
11426423--11426534	43	2.6	42	85	7	152	33	27	15	24	1.95
11426658--11426858	31	6.5	31	85	1	251	42	17	7	31	1.78
11426658--11426869	92	2.3	92	85	1	271	43	17	7	30	1.77
11428680--11429159	27	17.6	27	97	1	852	25	14	29	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11428680--11429159	82	5.9	82	96	1	874	25	14	29	30	1.95
11440771--11440809	12	3.2	12	86	13	62	10	7	0	82	0.86
11460168--11460209	17	2.5	17	85	11	59	42	9	0	47	1.36
11469854--11469942	28	3.2	28	87	3	126	25	26	17	29	1.98
11470772--11471054	149	1.9	149	86	0	404	31	12	14	42	1.82
11475781--11475870	23	3.8	23	68	16	58	26	2	6	64	1.30
11475767--11475897	64	2.0	64	86	7	185	28	2	6	62	1.33
11476356--11476389	5	6.6	5	96	3	59	55	0	0	44	0.99
11476563--11476597	18	1.9	18	88	0	52	42	25	5	25	1.77
11484812--11485159	5	69.6	5	98	0	543	55	19	4	20	1.60
11491712--11491919	104	2.0	104	99	0	407	45	13	14	25	1.82
11500230--11500320	40	2.3	40	92	3	148	24	19	27	28	1.99
11500230--11500357	40	3.2	40	85	3	134	25	20	27	27	1.99
11507383--11507473	40	2.3	40	92	3	148	24	19	27	28	1.99
11507383--11507510	40	3.2	40	85	3	134	25	20	27	27	1.99
11513960--11515269	654	2.0	654	100	0	2620	33	17	16	32	1.92
11525027--11525131	26	4.0	26	82	0	111	38	21	19	20	1.94
11535409--11535457	22	2.2	22	85	7	64	40	2	4	53	1.32
11535326--11535564	127	1.9	125	82	3	302	38	6	9	45	1.61
11537910--11537971	20	3.1	20	72	9	63	14	32	17	35	1.90
11537910--11537986	40	1.9	40	91	0	127	16	29	18	35	1.93
11544792--11544877	42	2.0	42	90	0	136	20	13	23	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11551946--11552031	43	2.0	43	86	4	120	54	0	19	25	1.44
11554348--11554441	49	1.9	49	84	0	125	42	6	25	25	1.78
11555515--11555727	68	3.1	68	79	5	232	41	13	18	26	1.88
11555562--11555757	68	2.9	68	81	4	191	39	14	18	27	1.90
11561760--11561803	19	2.3	20	81	18	58	61	4	25	9	1.45
11561778--11561843	33	2.0	33	85	5	89	60	7	21	10	1.54
11576948--11576989	21	2.0	21	100	0	84	23	4	23	47	1.70
11578087--11578143	25	2.3	25	90	0	87	19	26	17	36	1.94
11578100--11578190	22	4.0	23	80	8	96	16	24	19	39	1.92
11590085--11590183	29	3.5	28	70	10	76	33	18	23	25	1.97
11590081--11590193	57	2.0	57	84	3	147	34	19	21	24	1.96
11596836--11596904	20	3.5	20	79	15	70	27	21	33	17	1.96
11596815--11596939	40	3.1	40	81	2	135	28	21	32	16	1.95
11605026--11605176	41	3.5	41	79	10	167	19	33	15	31	1.93
11605082--11605177	47	2.0	47	97	0	183	16	38	15	29	1.90
11608437--11608815	27	14.1	27	81	7	373	44	17	15	21	1.86
11608430--11608815	81	4.8	81	81	6	435	45	17	15	21	1.86
11632617--11632659	21	2.0	21	91	8	70	37	0	9	53	1.33
11633501--11633689	26	7.3	26	75	2	155	24	16	27	31	1.97
11641792--11641923	42	3.2	42	77	7	117	22	21	14	40	1.90
11645281--11645396	57	2.0	57	94	0	205	28	12	16	42	1.85
11646234--11646300	33	2.0	33	91	0	107	25	23	31	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11646247--11646321	33	2.3	33	83	0	87	24	26	29	20	1.99
11647280--11647359	41	2.0	41	97	0	151	35	25	6	33	1.81
11650503--11650555	18	2.9	18	83	8	54	56	0	1	41	1.10
11650820--11650882	29	2.1	30	91	2	101	31	1	1	65	1.12
11650829--11650918	18	4.7	18	72	13	56	25	3	2	68	1.16
11650867--11650937	9	7.9	9	70	17	58	23	2	1	71	1.07
11650868--11650935	18	3.8	18	85	12	79	23	2	1	72	1.07
11650885--11650940	19	2.9	19	84	12	71	28	1	0	69	0.98
11655744--11655775	16	2.0	16	100	0	64	25	25	18	31	1.98
11657144--11657190	25	2.0	23	83	8	58	51	4	6	38	1.47
11680139--11680170	17	1.9	17	93	6	57	40	3	0	56	1.15
11680151--11680211	22	2.7	21	79	18	77	40	1	1	55	1.19
11686336--11686372	5	7.2	5	93	6	65	59	0	0	40	0.97
11686337--11686369	16	2.1	16	100	0	66	54	0	0	45	0.99
11689017--11689133	59	2.0	59	91	3	191	31	5	9	53	1.55
11692213--11692283	29	2.4	29	74	6	72	30	21	5	42	1.76
11693569--11693639	31	2.3	30	79	13	72	42	2	4	50	1.36
11695487--11695521	11	3.1	12	88	12	56	34	0	0	65	0.93
11695643--11695705	30	2.1	30	88	5	92	60	14	0	25	1.34
11696254--11696320	29	2.3	30	82	10	77	44	7	14	32	1.74
11703027--11703072	23	2.0	23	83	8	58	39	10	17	32	1.84
11705938--11706063	61	2.1	61	88	4	184	44	19	6	30	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11712113--11712197	42	2.0	42	97	0	161	25	20	4	49	1.68
11712901--11713064	49	3.3	49	80	8	224	23	23	21	31	1.98
11712898--11713103	99	2.1	99	100	0	412	22	24	21	31	1.98
11712929--11713275	50	6.8	50	79	4	302	22	28	20	27	1.99
11712898--11713222	99	3.3	99	86	1	319	21	27	21	29	1.99
11713869--11713912	21	2.1	21	95	0	79	52	25	0	22	1.48
11714370--11714415	13	3.5	13	78	21	60	45	15	6	32	1.71
11714666--11714990	91	3.6	91	84	1	427	24	16	27	32	1.96
11717067--11717131	30	2.2	30	91	0	103	32	23	16	27	1.96
11720567--11720611	18	2.8	16	81	15	56	37	4	31	26	1.76
11720571--11720606	18	2.0	18	94	0	63	33	5	30	30	1.81
11720593--11720633	20	1.9	23	85	14	61	53	2	24	19	1.57
11726009--11726052	23	1.9	23	90	0	70	36	22	15	25	1.94
11726250--11726290	18	2.3	18	87	8	57	39	17	0	43	1.49
11726575--11726611	6	6.2	6	100	0	74	0	16	0	83	0.64
11726568--11726615	18	2.8	17	84	9	71	0	18	0	81	0.70
11726568--11726621	18	3.1	17	82	12	65	0	20	0	79	0.73
11728128--11728179	17	2.9	17	78	16	52	55	3	1	38	1.29
11728111--11728179	37	1.9	36	85	11	97	55	4	1	39	1.29
11736005--11736095	19	4.7	19	69	8	76	30	28	24	16	1.96
11736005--11736100	38	2.5	39	81	1	104	31	27	23	17	1.97
11739990--11740068	41	1.9	41	94	0	140	30	24	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11740372--11740524	74	2.1	74	83	6	193	40	20	7	32	1.79
11741443--11741480	19	1.9	20	84	10	51	65	15	5	13	1.43
11746983--11747051	25	2.6	26	79	9	68	39	2	0	57	1.13
11747039--11747076	20	2.0	20	89	5	60	34	0	5	60	1.19
11747247--11747276	14	2.1	14	93	0	51	43	20	6	30	1.77
11749961--11750082	43	2.9	42	73	8	120	26	22	21	30	1.99
11755956--11755995	21	2.0	21	90	5	64	10	15	5	70	1.32
11756360--11756420	22	2.9	21	77	13	63	42	18	4	34	1.71
11756356--11756413	22	2.6	23	83	5	66	43	18	3	34	1.68
11761581--11761714	68	2.0	68	96	0	250	31	10	17	40	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187