genome.fa.s15.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  12  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2979387--2979539	61	2.5	61	100	0	306	30	13	24	32	1.94
2979959--2980423	234	2.0	234	96	0	851	32	11	24	32	1.90
2982296--2982356	17	3.4	17	70	12	59	31	1	14	52	1.52
2982291--2982361	37	1.9	37	97	0	133	32	2	16	47	1.61
2982364--2982423	9	6.4	9	84	7	84	25	8	28	38	1.84
2982369--2982426	20	3.0	20	87	5	84	22	6	29	41	1.80
2983557--2983591	12	2.9	12	91	0	52	8	11	14	65	1.46
2985495--2985774	27	10.4	27	72	9	146	41	21	16	20	1.90
2985495--2985702	81	2.6	81	79	6	208	41	22	17	18	1.90
2985675--2985958	27	10.6	27	83	1	268	36	19	19	24	1.95
2986023--2986069	24	1.9	25	91	4	78	14	6	27	51	1.67
2986022--2986076	24	2.3	24	84	6	76	20	7	25	47	1.75
2986149--2986214	27	2.5	26	85	9	80	21	24	21	33	1.97
2986196--2986249	26	2.1	26	89	0	81	16	20	25	37	1.93
2986252--2986498	32	7.7	31	77	9	187	19	19	23	38	1.94
2986264--2986498	64	3.7	63	80	2	227	19	19	23	37	1.94
2986301--2986484	96	1.9	96	86	0	260	19	19	24	36	1.94
2994079--2994135	9	6.4	9	80	11	73	40	21	10	28	1.86
2994175--2994251	6	12.8	6	97	0	145	18	0	16	64	1.28
2994180--2994264	18	4.6	20	92	2	110	20	0	14	65	1.26
2995913--2995950	19	2.0	19	89	0	58	31	26	5	36	1.79
2996677--2996758	41	2.0	41	92	0	137	31	24	15	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2997282--2997329	25	1.9	25	91	8	80	62	4	2	31	1.26
2998048--2998078	14	2.2	14	94	0	53	45	3	0	51	1.17
3002998--3003093	35	2.8	34	78	10	106	42	0	2	55	1.11
3002998--3003054	16	3.4	16	78	9	60	43	0	1	54	1.10
3002981--3003055	17	4.3	17	72	16	64	40	1	2	56	1.22
3003029--3003082	27	2.0	27	85	0	72	37	0	1	61	1.07
3003029--3003100	17	4.1	17	78	8	65	40	0	1	58	1.07
3003029--3003100	8	8.2	8	72	17	54	40	0	1	58	1.07
3006686--3006787	52	2.0	52	98	0	195	24	6	10	57	1.57
3010340--3010588	126	2.0	126	97	0	471	39	6	16	38	1.73
3010492--3010523	15	2.2	15	94	5	57	53	6	3	37	1.42
3017932--3018936	126	8.0	126	99	0	1974	39	5	15	38	1.72
3018840--3018871	15	2.2	15	94	5	57	53	6	3	37	1.42
3026280--3026528	126	2.0	126	96	0	462	39	6	16	38	1.74
3026432--3026463	15	2.2	15	94	5	57	53	6	3	37	1.42
3026768--3026806	17	2.3	17	95	0	69	51	0	2	46	1.14
3027990--3028036	25	2.0	24	83	8	60	48	6	2	42	1.40
3047467--3047502	18	2.0	18	88	0	54	11	63	2	22	1.39
3047781--3047824	6	7.3	6	89	0	61	18	70	0	11	1.16
3047898--3047936	9	4.3	9	83	0	51	23	64	0	12	1.28
3048112--3048155	6	7.3	6	84	0	52	9	68	2	20	1.28
3048112--3048154	12	3.6	12	87	0	59	6	69	2	20	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3053813--3053837	6	4.2	6	100	0	50	48	32	0	20	1.50
3057488--3057540	6	8.7	6	91	2	79	16	20	0	62	1.33
3060348--3060393	22	2.1	22	95	0	83	26	19	4	50	1.66
3060634--3060692	31	1.9	31	89	3	93	47	8	10	33	1.68
3066143--3066241	23	4.3	23	88	0	153	21	20	27	31	1.98
3069974--3070013	14	2.9	14	84	0	53	42	17	7	32	1.77
3072185--3072226	6	7.0	6	94	0	57	50	7	9	33	1.62
3072185--3072226	12	3.5	12	90	0	66	50	7	9	33	1.62
3076389--3076430	21	2.0	21	81	9	50	33	30	23	11	1.91
3094992--3095031	21	1.9	21	89	0	62	25	25	20	30	1.99
3095248--3095319	36	2.0	36	97	0	135	26	16	18	38	1.91
3096739--3096788	25	2.0	25	92	0	82	16	6	34	44	1.72
3099362--3099539	52	3.5	52	86	6	215	26	15	29	28	1.96
3104360--3104408	25	2.0	24	96	4	89	20	20	20	36	1.93
3106646--3106774	52	2.5	51	87	6	172	27	16	27	27	1.97
3106646--3106774	51	2.5	52	87	6	174	27	16	27	27	1.97
3113316--3113665	45	7.8	45	86	2	409	23	20	17	38	1.93
3113357--3113706	45	7.8	45	86	0	387	24	19	17	39	1.92
3113360--3113751	135	2.9	135	81	3	360	24	19	17	39	1.92
3114329--3114368	16	2.4	17	84	16	57	30	17	2	50	1.59
3119677--3119719	13	3.1	14	84	12	54	60	0	0	39	0.97
3123378--3123410	5	6.6	5	100	0	66	18	18	0	63	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3124880--3124946	21	3.3	21	66	16	59	40	11	4	43	1.62
3124880--3124952	23	3.4	23	69	21	77	41	12	4	42	1.61
3124881--3124949	19	3.5	19	69	7	57	40	13	4	42	1.63
3124870--3124950	40	2.0	40	97	0	153	40	13	4	40	1.66
3124933--3124991	28	2.0	28	87	6	82	44	10	0	45	1.37
3125274--3125301	4	7.0	4	100	0	56	25	0	0	75	0.81
3137003--3137148	49	3.0	49	97	0	274	32	8	29	30	1.86
3137388--3137487	51	2.0	51	97	0	191	33	13	20	34	1.90
3138238--3138380	43	3.3	43	83	2	146	34	22	17	25	1.95
3138273--3138398	43	3.0	43	83	3	112	32	22	16	28	1.96
3147687--3147730	21	2.0	22	91	4	72	31	0	36	31	1.58
3148236--3148264	4	7.2	4	100	0	58	24	0	0	75	0.80
3148580--3148623	21	2.1	21	82	0	52	36	36	0	27	1.57
3148582--3148628	15	3.2	15	78	3	51	31	42	0	25	1.55
3148601--3148638	15	2.6	15	87	4	51	39	39	0	21	1.53
3149128--3149378	40	6.3	40	77	1	227	25	23	21	29	1.99
3149140--3149359	80	2.8	79	83	4	264	27	24	21	26	1.99
3149488--3150179	138	5.0	139	87	2	977	45	6	8	39	1.60
3149488--3150179	274	2.5	274	88	2	1005	45	6	8	39	1.60
3156681--3157096	138	3.0	137	87	5	583	45	5	6	41	1.54
3160762--3160804	9	4.8	9	100	0	86	23	11	0	65	1.25
3162437--3162628	50	3.8	50	86	2	260	27	22	29	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3166508--3166554	21	2.3	20	81	3	58	59	6	0	34	1.23
3174133--3174163	4	7.8	4	100	0	62	25	0	0	74	0.82
3179514--3179576	29	2.3	27	84	13	83	33	1	3	61	1.21
3180666--3180718	21	2.7	19	78	16	54	45	0	3	50	1.19
3198411--3198455	18	2.5	18	100	0	90	53	17	15	13	1.73
3213586--3213657	5	14.8	5	74	21	64	38	1	4	55	1.28
3213615--3213657	19	2.3	19	92	8	70	41	2	0	55	1.12
3213662--3213701	18	2.2	19	90	4	64	80	2	15	2	0.93
3214272--3214329	30	1.9	30	89	0	89	41	3	24	31	1.71
3214541--3214572	13	2.5	13	94	0	55	31	0	12	56	1.37
3214667--3214908	50	4.7	50	86	4	297	26	24	29	19	1.99
3214667--3214916	100	2.4	103	88	6	364	26	24	29	20	1.99
3222211--3222626	131	3.2	130	87	4	579	30	20	24	25	1.99
3222637--3222678	21	2.0	21	95	0	75	35	4	35	23	1.76
3224403--3224431	12	2.4	12	100	0	58	34	6	0	58	1.25
3224409--3224452	21	2.0	22	83	12	56	25	11	2	61	1.41
3228873--3228907	15	2.3	16	85	14	56	71	0	28	0	0.86
3237434--3237483	17	3.2	17	72	21	63	56	22	10	12	1.65
3239525--3239569	24	1.9	23	86	13	65	46	22	13	17	1.83
3240656--3240708	25	2.2	24	89	3	79	30	15	26	28	1.96
3241144--3241169	13	2.0	13	100	0	52	38	23	0	38	1.55
3248393--3248520	43	3.0	42	74	2	105	29	14	24	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3257505--3257544	14	2.9	14	84	0	53	42	0	5	52	1.23
3267693--3267926	41	5.7	41	93	1	378	22	28	21	27	1.99
3286874--3286924	26	2.0	26	88	3	77	9	9	11	68	1.39
3291280--3291461	91	2.0	91	96	0	337	28	21	14	36	1.92
3309915--3309952	18	2.1	18	100	0	76	52	47	0	0	1.00
3310309--3310477	91	1.8	92	91	3	279	15	12	27	44	1.82
3310504--3310850	122	2.8	123	86	6	515	29	15	22	32	1.95
3311427--3312016	296	2.0	296	97	0	1108	26	19	29	24	1.98
3313831--3314048	116	1.9	116	95	0	391	42	9	9	38	1.70
3314124--3314227	50	2.1	51	90	3	167	26	0	26	45	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187