genome.fa.s15.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  149  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44875816--44875855	20	1.9	21	85	10	55	22	22	0	55	1.44
44876480--44876506	5	5.4	5	100	0	54	22	18	18	40	1.91
44879914--44879954	22	2.0	20	86	13	57	14	4	34	46	1.66
44880457--44881402	44	21.4	44	81	5	885	31	23	13	31	1.93
44880457--44881402	132	7.1	132	85	3	1089	31	23	13	31	1.93
44883670--44883712	18	2.4	18	84	0	50	65	6	16	11	1.46
44887637--44887670	11	3.2	10	88	12	50	55	0	2	41	1.15
44887835--44887874	15	2.8	14	88	3	53	70	5	2	22	1.19
44890314--44890356	16	2.5	17	81	11	52	55	0	0	44	0.99
44897809--44897881	30	2.4	31	86	4	103	30	19	1	49	1.57
44901355--44901383	2	15.0	2	92	7	51	51	0	48	0	1.00
44916810--44916861	27	1.9	27	84	0	68	40	25	7	26	1.82
44917861--44917899	11	3.6	11	82	6	53	69	0	20	10	1.17
44917861--44917901	21	2.0	21	95	0	73	70	0	19	9	1.14
44917961--44918058	39	2.5	39	88	3	144	18	2	30	48	1.59
44920206--44920236	16	1.9	16	93	0	53	74	6	9	9	1.23
44930575--44930634	24	2.6	25	84	10	74	45	0	0	55	0.99
44934810--44934858	21	2.4	21	75	21	50	36	10	16	36	1.82
44934900--44934971	20	3.6	20	94	0	126	50	0	27	22	1.50
44934930--44934962	15	2.1	16	88	5	50	51	0	27	21	1.48
44937941--44937995	20	2.8	20	89	10	94	21	29	0	49	1.50
44939405--44939442	20	2.1	18	85	14	51	55	18	0	26	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44945047--44945122	27	2.7	28	80	15	77	34	7	2	55	1.43
44945033--44945099	3	22.3	3	75	6	55	32	5	2	58	1.38
44945429--44945504	29	2.6	28	81	6	89	32	9	1	56	1.39
44957896--44958234	44	7.8	44	72	5	195	30	20	21	27	1.98
44957891--44958057	89	1.9	89	89	2	264	28	21	23	26	1.99
44958923--44958956	9	4.0	8	85	14	50	17	0	0	82	0.67
44958926--44958952	14	1.9	14	100	0	54	18	0	0	81	0.69
44960067--44960131	28	2.3	27	84	7	85	33	6	1	58	1.32
44962867--44963030	40	4.1	40	83	0	186	35	21	19	22	1.96
44963281--44963330	22	2.3	21	82	3	64	24	0	30	46	1.53
44963824--44963900	39	2.0	38	87	2	109	57	6	2	33	1.38
44964268--44964311	23	1.9	23	86	9	63	54	4	6	34	1.47
44964607--44964709	29	3.5	29	67	19	77	11	14	7	66	1.45
44966630--44966732	29	3.5	29	67	19	77	11	14	7	66	1.45
44969083--44969173	43	2.1	43	85	2	121	32	10	10	45	1.75
44969513--44969665	42	3.6	43	78	6	136	22	13	24	39	1.90
44970881--44971090	107	2.0	107	86	1	296	25	16	20	38	1.92
44972161--44972482	111	2.9	110	92	1	538	34	17	16	31	1.93
44983197--44983241	23	2.0	23	90	0	72	35	6	15	42	1.73
44991856--44991907	24	2.2	24	89	0	77	55	9	1	32	1.43
44993826--44993877	24	2.2	24	89	0	77	55	9	1	32	1.43
44995796--44995847	24	2.2	24	89	0	77	55	9	1	32	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44997766--44997817	24	2.2	24	89	0	77	55	9	1	32	1.43
45002092--45002246	48	3.3	49	66	29	129	40	12	9	36	1.77
45002054--45002273	93	2.4	93	93	1	379	41	12	10	35	1.77
45006924--45007010	43	2.0	43	95	0	156	37	16	20	25	1.93
45014993--45015055	31	2.1	31	87	3	92	47	6	3	42	1.44
45016063--45016123	16	3.9	16	84	4	79	44	4	21	29	1.73
45016063--45016125	31	2.0	31	87	0	90	46	4	20	28	1.71
45016067--45016133	16	4.3	15	79	7	62	46	4	19	29	1.69
45016189--45016214	13	2.0	13	100	0	52	15	0	30	53	1.42
45016323--45016446	58	2.1	58	86	2	169	53	3	0	42	1.22
45016454--45016496	21	2.0	21	90	0	68	60	6	0	32	1.23
45016444--45016501	21	2.5	22	81	13	64	53	8	1	36	1.42
45018493--45019675	590	2.0	592	97	0	2217	41	14	16	27	1.87
45022803--45022890	27	3.3	25	72	10	68	30	19	30	19	1.96
45029909--45029945	6	6.2	6	100	0	74	83	0	0	16	0.64
45031676--45031925	95	2.6	96	87	4	346	31	20	15	33	1.93
45049282--45049346	31	2.0	33	82	5	80	38	15	10	35	1.82
45049435--45049487	10	5.4	10	93	2	81	24	7	9	58	1.55
45049435--45049487	20	2.7	20	91	2	90	24	7	9	58	1.55
45052397--45052438	19	2.3	18	95	4	75	40	2	14	42	1.58
45054461--45054511	24	2.1	24	100	0	102	15	23	27	33	1.95
45055610--45055691	42	2.0	42	97	0	155	30	10	13	45	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45056362--45056423	31	1.9	33	83	9	83	45	1	19	33	1.60
45070172--45070310	49	2.8	49	95	0	242	24	14	28	33	1.94
45083001--45083039	18	2.2	18	90	9	62	58	0	2	38	1.12
45087813--45088200	195	2.0	195	100	0	776	26	15	16	42	1.88
45088709--45088753	23	2.0	23	90	0	72	31	6	20	42	1.77
45089063--45089565	254	2.0	254	91	0	808	24	19	14	41	1.89
45090045--45090124	24	3.4	23	70	5	70	28	25	18	27	1.98
45090956--45091029	20	4.0	20	67	25	63	31	9	10	48	1.70
45090947--45091041	34	2.8	34	88	7	147	34	7	12	45	1.70
45093680--45093712	13	2.5	13	100	0	66	30	6	15	48	1.69
45094105--45094170	28	2.4	28	92	0	105	36	1	22	39	1.64
45095251--45095289	19	2.1	19	85	0	51	53	7	10	28	1.62
45105307--45105339	16	2.0	17	94	5	59	78	0	9	12	0.95
45105307--45105339	9	3.9	9	84	15	52	78	0	9	12	0.95
45106548--45107198	88	7.4	88	95	0	1126	26	24	24	23	2.00
45107086--45107330	133	1.8	132	89	3	384	25	23	24	26	2.00
45107242--45107390	43	3.4	43	64	14	106	28	23	24	23	2.00
45107197--45107391	88	2.2	89	79	8	247	27	22	25	25	2.00
45108853--45108930	21	3.8	21	68	20	65	24	7	2	65	1.32
45109236--45109300	22	2.9	22	78	13	62	18	4	7	69	1.31
45109341--45109379	21	1.9	20	84	5	51	28	10	2	58	1.44
45109408--45109722	111	2.8	111	91	1	499	30	14	18	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45114318--45114354	17	2.2	17	100	0	74	37	10	0	51	1.37
45114322--45114360	17	2.3	17	90	0	60	35	15	0	48	1.45
45116914--45116968	25	2.2	25	93	0	92	36	14	27	21	1.93
45118191--45118382	25	7.8	25	70	11	112	32	20	26	20	1.97
45118192--45118335	49	2.9	50	79	5	150	31	21	27	19	1.97
45130412--45130444	15	2.1	16	88	5	50	24	12	0	63	1.28
45133226--45133282	28	2.0	29	82	6	71	36	21	3	38	1.70
45135740--45135806	9	7.4	9	71	17	50	29	1	1	67	1.09
45137040--45137079	21	1.9	21	90	10	64	70	5	0	25	1.08
45141453--45141679	109	2.1	109	98	0	436	47	15	13	22	1.81
45142951--45142988	2	19.0	2	88	0	58	2	0	44	52	1.14
45142994--45143027	2	17.0	2	100	0	68	50	0	50	0	1.00
45150682--45150716	17	1.9	19	88	11	56	34	17	2	45	1.63
45157169--45157224	27	2.1	27	96	0	103	16	17	23	42	1.88
45161688--45161771	6	14.7	6	76	9	77	15	29	16	38	1.90
45161696--45161738	9	4.9	9	80	5	52	9	32	20	37	1.85
45161678--45161774	15	6.5	15	79	2	61	18	29	14	37	1.91
45164034--45164070	19	1.9	19	88	0	56	59	8	2	29	1.40
45166470--45166502	13	2.5	14	85	14	52	33	0	0	66	0.92
45173794--45173820	13	2.1	13	100	0	54	48	29	0	22	1.51
45174535--45174741	54	3.6	54	70	17	155	42	1	3	52	1.28
45174680--45174721	15	2.7	16	82	14	52	45	0	2	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45174671--45174712	15	2.9	15	82	10	52	47	0	0	52	1.00
45174847--45174953	45	2.5	43	81	11	125	30	28	5	35	1.80
45174937--45175004	16	4.2	16	82	0	82	33	35	2	27	1.72
45183804--45183852	17	2.8	17	84	3	62	40	6	0	53	1.26
45185516--45185559	20	2.2	20	95	0	79	43	11	11	34	1.77
45188222--45188295	23	3.2	23	92	0	130	17	14	21	45	1.84
45188222--45188307	23	3.8	21	71	19	66	16	15	22	46	1.83
45188217--45188329	46	2.5	46	85	9	144	17	15	23	43	1.87
45190112--45190161	26	1.9	26	91	0	82	46	10	12	32	1.74
45199564--45199610	23	2.0	23	88	8	69	42	0	4	53	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187