genome.fa.s15.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  112  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33035092--33035193	27	3.8	27	82	3	116	25	25	11	37	1.90
33036877--33036910	4	8.5	4	86	0	50	26	2	0	70	1.01
33037647--33037746	12	8.7	11	72	19	80	27	6	7	60	1.46
33037647--33037688	21	2.0	21	90	0	66	23	2	9	64	1.35
33037702--33037752	23	2.2	23	100	0	102	31	3	3	60	1.33
33037825--33037873	12	4.1	12	76	7	55	32	0	2	65	1.04
33037833--33037882	23	2.1	23	82	10	57	32	4	4	60	1.34
33043225--33043285	32	1.9	31	83	3	77	42	11	13	32	1.79
33062317--33062430	57	2.0	57	91	0	183	27	8	21	42	1.82
33066788--33066818	8	3.9	8	91	0	53	64	9	0	25	1.24
33067202--33067300	47	2.1	47	90	0	153	47	18	13	21	1.82
33070216--33070251	18	1.9	19	88	5	56	50	2	0	47	1.15
33078694--33078738	22	2.0	23	91	4	74	48	17	0	33	1.48
33079565--33079614	20	2.5	20	80	12	57	46	2	2	50	1.24
33079575--33079612	20	2.0	20	89	5	60	52	2	0	44	1.14
33081579--33081629	16	3.3	15	78	13	50	52	1	29	15	1.54
33087639--33087723	42	2.0	42	100	0	170	42	7	16	34	1.75
33088380--33088407	2	14.0	2	100	0	56	50	0	0	50	1.00
33090406--33090464	27	2.2	27	96	0	109	23	32	30	13	1.93
33090516--33090553	19	2.1	19	85	9	53	15	2	7	73	1.17
33098583--33098635	21	2.5	21	81	0	61	30	32	9	28	1.88
33099137--33099194	8	7.4	8	77	14	59	43	1	3	51	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33101386--33101425	21	1.9	21	89	0	62	40	5	0	55	1.22
33104915--33104974	28	2.1	28	84	9	77	23	1	8	66	1.28
33107674--33107714	22	1.9	21	85	5	55	31	7	24	36	1.83
33112370--33112401	16	2.0	16	93	0	55	37	3	25	34	1.72
33112460--33112527	30	2.2	31	84	2	84	48	7	17	26	1.73
33120125--33120157	15	2.1	16	88	5	50	18	3	3	75	1.06
33120348--33120682	44	7.8	43	77	7	288	28	22	21	28	1.99
33120481--33120682	84	2.4	85	83	7	248	28	23	21	27	1.99
33120350--33120687	128	2.6	128	90	0	543	28	21	21	28	1.99
33133855--33133887	15	2.1	16	88	5	50	18	3	3	75	1.06
33134375--33134440	13	5.5	13	76	20	81	36	0	15	48	1.45
33134371--33134442	23	3.1	23	95	0	135	38	0	15	45	1.46
33135266--33136120	427	2.0	427	96	0	1595	26	16	17	40	1.90
33150782--33150846	17	3.7	17	77	4	58	18	6	4	70	1.26
33153045--33153229	79	2.3	81	84	7	236	24	22	27	25	2.00
33153046--33153229	40	4.6	40	83	9	216	24	22	27	25	2.00
33153046--33153262	79	2.7	79	81	7	201	25	22	27	24	2.00
33161021--33161243	39	5.7	40	85	8	266	25	22	27	24	2.00
33161021--33161243	79	2.8	81	84	9	282	25	22	27	24	2.00
33161021--33161276	79	3.3	79	81	10	217	26	21	27	24	1.99
33166169--33166338	55	3.1	55	61	23	122	36	15	22	24	1.94
33166165--33166385	109	2.0	109	98	0	424	35	16	20	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33167651--33167759	57	1.9	57	88	3	166	29	18	26	25	1.98
33167832--33167969	54	2.6	54	98	0	267	28	18	23	29	1.98
33168166--33168274	57	1.9	57	88	3	166	29	18	27	24	1.98
33168401--33168532	67	2.0	67	92	3	221	21	18	31	28	1.97
33171167--33171226	24	2.5	24	88	2	84	36	16	26	20	1.93
33171268--33171333	26	2.6	25	80	7	69	36	21	25	16	1.94
33173356--33173444	25	3.5	25	84	3	106	17	12	30	39	1.87
33173439--33173492	25	2.2	25	89	0	81	27	11	27	33	1.91
33180320--33180367	23	2.1	23	84	0	60	18	10	8	62	1.52
33181874--33181905	9	3.6	9	95	0	55	25	0	0	75	0.81
33189841--33189896	13	4.2	13	75	18	53	73	3	8	14	1.21
33190600--33190645	20	2.2	21	77	14	51	71	0	6	21	1.08
33191255--33191544	129	2.2	128	90	3	447	23	20	22	34	1.97
33191306--33191549	44	5.6	42	68	12	145	22	20	22	34	1.97
33191540--33191985	44	10.1	44	65	8	154	27	24	18	29	1.98
33191519--33192035	132	3.9	132	94	1	869	27	24	18	29	1.98
33193105--33193148	18	2.6	16	80	13	52	11	15	0	72	1.11
33193110--33193150	18	2.3	18	91	0	64	12	14	0	73	1.11
33194841--33194990	80	1.9	80	100	0	300	17	30	10	42	1.82
33195084--33195149	33	2.0	33	87	0	96	21	21	24	33	1.97
33197615--33197856	127	1.9	129	79	6	280	35	13	18	33	1.90
33198283--33198338	13	4.2	13	75	18	53	73	3	8	14	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33201388--33201414	13	2.1	13	100	0	54	55	7	0	37	1.28
33203475--33203509	18	2.0	17	88	5	52	45	0	0	54	0.99
33203608--33203649	15	2.7	16	82	14	52	45	0	2	52	1.13
33203599--33203640	15	2.9	15	82	10	52	47	0	0	52	1.00
33203583--33203898	156	2.0	157	95	0	562	48	5	3	43	1.42
33203751--33203785	18	2.0	17	88	5	52	45	0	0	54	0.99
33204021--33204056	16	2.2	16	100	0	72	38	36	0	25	1.56
33206137--33206167	15	2.1	15	93	0	53	64	0	0	35	0.94
33209135--33209302	84	2.0	84	96	0	309	46	8	15	29	1.76
33213364--33213415	27	1.9	27	92	0	86	13	25	32	28	1.93
33220258--33220357	31	3.2	31	71	10	105	41	11	7	41	1.67
33221037--33221088	24	2.2	24	85	0	68	38	3	7	50	1.50
33227381--33227431	19	2.5	20	87	6	77	39	11	13	35	1.82
33227635--33227683	23	2.1	23	84	0	62	22	0	14	63	1.30
33240807--33240933	28	4.5	28	85	2	112	28	28	10	33	1.90
33240807--33240933	56	2.3	56	84	2	157	28	28	10	33	1.90
33243731--33243823	25	3.9	23	80	6	89	25	23	18	32	1.97
33246418--33246633	105	2.1	105	92	1	362	28	24	12	35	1.91
33260292--33260345	27	2.0	27	100	0	108	40	29	3	25	1.73
33265241--33265319	39	2.0	39	100	0	158	30	22	10	36	1.87
33265690--33265827	66	2.1	66	93	2	235	54	22	10	13	1.68
33266205--33266252	19	2.5	19	100	0	96	50	10	6	33	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33269886--33269928	22	2.0	21	82	13	52	37	4	2	55	1.33
33271815--33271902	33	2.6	34	85	3	106	29	4	12	53	1.58
33275539--33275581	12	3.6	12	100	0	86	25	44	16	13	1.85
33275781--33275886	28	3.7	28	80	2	113	27	9	6	56	1.56
33275781--33275919	28	4.9	28	75	6	100	25	12	7	54	1.62
33275721--33275887	28	5.8	29	71	11	103	26	8	7	56	1.57
33275713--33275914	29	7.0	29	71	10	119	24	10	7	56	1.59
33276422--33276666	85	2.9	85	90	1	348	29	14	22	32	1.94
33278776--33278847	10	7.2	10	82	13	78	73	0	4	22	1.00
33282753--33282791	19	2.1	19	100	0	78	25	15	25	33	1.95
33287648--33287694	21	2.3	21	85	3	60	40	4	4	51	1.41
33290258--33290523	133	2.0	133	99	0	523	42	7	16	32	1.77
33292916--33292983	34	2.0	34	82	0	82	26	19	29	25	1.98
33292916--33292997	17	4.8	17	76	0	56	25	18	30	25	1.98
33292917--33293173	125	2.1	125	93	0	435	30	14	23	30	1.95
33296723--33296748	7	3.7	7	100	0	52	88	0	0	11	0.52
33304596--33304641	14	3.4	14	73	11	51	69	2	0	28	1.00
33307109--33307133	13	1.9	13	100	0	50	56	0	28	16	1.41
33307862--33307903	12	3.5	12	83	0	57	38	14	14	33	1.86
33308029--33308093	27	2.4	27	75	12	62	41	15	20	23	1.89
33309788--33309830	11	3.8	11	80	17	52	30	2	2	65	1.18
33312583--33312623	10	4.2	10	76	17	50	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33312589--33312634	19	2.4	18	82	10	56	71	0	0	28	0.86
33312589--33312634	20	2.4	19	85	3	65	71	0	0	28	0.86
33313864--33313960	50	2.0	49	95	2	176	43	14	15	26	1.85
33314579--33314680	10	10.9	10	64	20	51	30	2	1	64	1.19
33314592--33314690	53	1.9	49	88	8	144	32	3	3	61	1.26
33314909--33314996	31	3.0	30	79	12	94	48	15	17	18	1.81
33316230--33316452	118	1.9	118	86	1	322	39	16	13	30	1.87
33316422--33316695	105	2.6	105	89	4	394	36	13	18	32	1.89
33318161--33318312	50	2.9	50	86	5	178	18	29	25	26	1.98
33319512--33319753	105	2.3	105	85	0	322	36	15	15	31	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187