genome.fa.s15.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  174  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53255194--53255423	80	2.9	80	91	1	354	25	29	21	23	1.99
53255193--53255424	120	1.9	120	89	1	358	25	29	21	23	1.99
53255193--53255424	40	5.8	41	85	4	303	25	29	21	23	1.99
53259275--53259310	18	2.0	18	88	0	54	19	8	13	58	1.61
53261192--53261220	15	1.9	15	100	0	58	27	27	13	31	1.94
53261392--53261425	9	3.8	9	92	0	59	44	14	11	29	1.81
53262430--53262455	5	5.2	5	100	0	52	19	19	19	42	1.90
53264714--53264764	8	6.4	8	80	15	61	41	3	0	54	1.19
53264719--53264771	16	3.4	16	80	15	74	43	3	0	52	1.19
53272020--53272128	40	2.7	40	82	4	130	34	12	18	33	1.89
53274166--53274299	50	2.7	50	94	0	223	26	22	31	20	1.98
53275746--53276124	39	9.6	39	92	4	563	24	27	22	25	2.00
53277402--53277518	58	2.0	58	98	0	225	30	35	12	20	1.90
53283893--53284610	40	18.0	40	99	0	1384	27	27	20	25	1.99
53290521--53290551	15	2.1	15	100	0	62	48	0	6	45	1.28
53297274--53297316	15	2.6	17	85	10	63	25	4	0	69	1.07
53297274--53297314	16	2.6	16	88	7	57	24	4	0	70	1.06
53300639--53300677	20	2.0	20	90	10	62	53	30	2	12	1.52
53301784--53301941	25	6.3	25	72	13	110	27	20	23	29	1.99
53301796--53301941	50	2.9	49	79	8	168	27	19	22	30	1.98
53306620--53306658	20	2.0	20	90	10	62	51	30	5	12	1.62
53307762--53307980	25	8.8	25	72	9	153	26	19	23	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53307762--53307956	75	2.6	75	82	6	209	26	18	24	30	1.98
53310615--53310685	35	2.0	35	100	0	142	16	23	14	45	1.84
53310892--53310919	5	5.6	5	100	0	56	35	0	0	64	0.94
53313684--53313709	12	2.2	12	100	0	52	46	0	15	38	1.46
53344404--53344438	9	3.9	9	96	0	61	45	2	11	40	1.55
53346145--53346381	44	5.1	44	66	20	124	27	23	16	32	1.96
53346097--53346730	94	6.8	94	79	7	616	26	21	18	34	1.96
53346250--53346400	44	3.3	44	72	19	130	27	22	15	33	1.95
53346138--53346693	181	3.0	180	77	10	550	26	21	18	33	1.96
53346529--53346674	44	3.2	44	68	17	125	26	21	19	33	1.97
53346177--53346717	275	2.0	274	84	2	710	26	21	18	34	1.96
53353758--53353840	41	2.0	41	90	0	130	46	8	16	27	1.76
53354251--53354318	35	1.9	35	90	0	109	25	20	29	25	1.99
53354286--53354420	50	2.7	51	89	1	209	25	22	29	21	1.99
53357973--53358048	25	3.0	24	78	17	84	65	5	3	25	1.31
53359966--53360010	22	2.0	23	83	12	58	46	2	2	48	1.26
53370455--53370509	18	2.8	19	81	8	67	30	21	20	27	1.98
53371850--53371979	6	21.7	6	100	0	260	33	0	0	66	0.92
53382287--53382360	37	2.0	37	94	0	130	43	17	18	20	1.88
53383637--53383680	16	2.7	16	82	3	52	22	25	29	22	1.99
53388143--53388214	36	2.0	36	94	0	126	27	16	16	38	1.90
53388538--53388903	116	3.1	116	96	0	651	28	21	21	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53400080--53400133	19	2.7	20	82	8	65	57	3	0	38	1.17
53401683--53401738	27	2.1	27	83	3	69	60	0	1	37	1.07
53404752--53405031	125	2.3	123	85	4	384	30	16	21	32	1.95
53408214--53408251	17	2.2	18	85	4	51	31	0	10	57	1.32
53408234--53409375	58	19.7	58	94	1	1746	31	2	23	41	1.69
53408239--53409196	29	33.2	27	80	6	478	31	2	24	41	1.69
53410538--53410562	7	3.6	7	100	0	50	60	12	0	28	1.32
53411651--53411709	30	2.0	29	90	6	93	57	1	0	40	1.09
53411743--53411793	22	2.3	21	87	9	75	33	0	35	31	1.58
53412095--53412150	29	2.0	29	85	3	78	41	16	14	28	1.87
53412789--53412841	20	2.6	21	79	8	65	73	7	0	18	1.06
53415184--53415217	12	2.8	12	86	0	50	50	2	0	47	1.16
53415251--53415299	20	2.7	18	77	22	57	51	4	2	42	1.32
53415151--53415359	62	3.2	64	71	15	178	50	4	3	41	1.38
53415977--53416007	16	1.9	16	100	0	62	70	6	9	12	1.31
53416893--53416917	12	2.1	12	100	0	50	0	0	8	92	0.40
53419904--53419976	31	2.4	31	88	4	103	47	12	16	23	1.80
53420385--53420439	23	2.4	23	82	8	60	60	3	3	32	1.32
53420559--53420590	16	2.1	15	94	5	55	50	6	3	40	1.43
53420558--53420592	15	2.4	14	86	13	52	54	5	2	37	1.39
53422506--53422530	9	2.8	9	100	0	50	24	24	32	20	1.98
53432250--53432310	26	2.5	26	85	15	85	21	26	22	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53432241--53432310	23	2.9	22	83	14	77	20	27	21	31	1.98
53443449--53444027	190	3.0	191	87	2	836	24	15	13	46	1.82
53448100--53448486	191	2.0	192	98	0	749	33	14	17	33	1.91
53449935--53449977	19	2.3	19	95	0	77	23	23	6	46	1.76
53451555--53451631	21	3.7	21	71	1	66	46	15	18	19	1.84
53451529--53451608	42	1.9	42	84	5	108	43	18	20	17	1.88
53459897--53460211	120	2.6	120	83	4	402	23	27	15	32	1.95
53460131--53460191	20	3.0	20	65	9	52	22	31	18	27	1.97
53459895--53460211	40	7.9	40	81	4	320	23	27	16	32	1.95
53460142--53460277	68	2.0	67	84	4	175	22	22	17	37	1.94
53465585--53465668	39	2.1	40	86	2	116	21	25	19	34	1.96
53475464--53475509	10	4.5	10	83	2	56	45	19	4	30	1.70
53482349--53482438	43	2.1	43	85	2	119	33	11	11	44	1.75
53482699--53482893	43	4.5	43	79	3	205	28	16	28	26	1.97
53483303--53483370	34	2.0	35	88	2	102	29	7	7	55	1.54
53484807--53484855	14	3.6	14	91	2	82	71	0	8	20	1.11
53484802--53484855	27	2.0	27	96	0	99	64	0	11	24	1.25
53484805--53484855	13	3.8	13	92	5	84	68	0	9	21	1.18
53485783--53485827	18	2.5	17	82	13	54	73	4	15	6	1.21
53485781--53485832	18	2.8	18	75	16	52	67	3	19	9	1.35
53490972--53491133	80	2.0	80	98	0	315	45	0	9	45	1.35
53493648--53493689	19	2.4	18	85	14	61	19	40	0	40	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53505817--53505853	7	5.3	7	90	0	56	18	35	0	45	1.50
53507955--53508095	52	2.8	52	90	4	207	30	17	14	37	1.90
53511169--53511492	130	2.5	130	89	1	479	41	17	7	33	1.77
53511734--53511815	8	10.0	8	80	6	85	53	0	1	45	1.08
53511734--53511821	9	10.6	9	76	14	55	53	0	1	45	1.07
53511734--53511821	17	5.3	17	75	9	83	53	0	1	45	1.07
53519898--53519956	27	2.2	27	81	6	66	27	23	23	25	2.00
53519942--53519999	27	2.1	27	87	6	82	22	20	31	25	1.98
53522550--53522633	39	2.2	39	84	0	105	17	32	15	34	1.92
53525136--53525167	17	1.9	17	93	6	57	43	0	9	46	1.35
53528376--53528401	7	3.7	7	100	0	52	26	0	0	73	0.84
53528413--53528447	18	1.9	18	94	0	61	14	2	17	65	1.38
53530085--53530109	13	1.9	13	100	0	50	44	0	16	40	1.47
53534059--53534100	19	2.2	19	86	0	57	69	0	26	4	1.08
53535013--53535319	154	2.0	154	95	0	551	28	20	15	35	1.94
53538081--53538196	28	4.1	28	83	3	126	55	4	18	21	1.60
53538404--53538497	46	2.0	46	91	0	152	38	14	6	40	1.72
53539569--53539718	27	5.5	27	78	10	103	27	22	14	36	1.92
53539574--53539717	54	2.6	54	79	10	143	26	23	13	36	1.92
53539642--53539723	28	3.0	28	92	1	130	28	24	10	36	1.89
53543154--53543226	21	3.3	21	72	10	65	43	4	2	49	1.36
53543149--53543234	45	1.9	45	88	4	129	41	5	3	48	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53543465--53543497	17	2.0	17	88	5	50	42	0	0	57	0.98
53544235--53544265	16	1.9	16	93	0	53	38	38	0	22	1.54
53545627--53545701	29	2.5	30	80	4	80	49	16	13	21	1.79
53546447--53546511	27	2.5	26	82	12	71	67	6	6	20	1.34
53546465--53546528	29	2.3	27	83	5	74	68	6	6	18	1.32
53547553--53547717	40	4.1	40	71	3	134	33	19	22	24	1.97
53547797--53547886	40	2.2	40	84	9	121	31	15	22	31	1.95
53547810--53547904	40	2.4	40	83	0	127	30	16	21	31	1.95
53547985--53548119	40	3.4	40	81	9	159	34	20	19	26	1.96
53548437--53548522	30	2.9	30	86	8	113	22	0	29	48	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187