genome.fa.s15.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  150  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45218478--45218505	13	2.2	13	100	0	56	64	35	0	0	0.94
45218815--45218844	12	2.5	12	94	0	51	50	0	3	46	1.18
45218829--45218930	31	3.3	30	71	15	84	42	1	6	49	1.41
45219445--45220382	43	21.9	43	98	0	1749	23	19	20	36	1.95
45224530--45225407	18	49.7	17	66	30	76	35	0	18	46	1.51
45224530--45225585	25	44.3	25	77	21	324	34	0	19	46	1.51
45224597--45225567	71	13.5	71	94	4	1632	34	0	18	46	1.50
45225561--45225621	18	3.4	18	76	0	68	27	0	26	45	1.54
45249744--45249886	9	14.8	9	67	16	65	30	4	2	62	1.28
45249745--45249806	19	3.3	19	82	13	74	24	0	3	72	0.99
45249746--45249819	20	3.8	19	80	8	78	22	2	2	71	1.11
45249746--45249818	29	2.5	28	82	10	83	21	2	2	72	1.10
45252271--45252329	9	6.7	9	77	12	52	37	3	0	59	1.14
45264995--45265021	5	5.4	5	100	0	54	22	18	22	37	1.95
45268098--45268236	41	3.4	41	90	1	208	40	13	21	24	1.90
45271766--45272271	264	1.9	265	94	0	888	38	15	12	33	1.85
45275050--45275097	23	2.1	23	92	0	78	29	8	14	47	1.73
45282913--45282963	21	2.5	20	87	6	68	25	17	23	33	1.96
45285362--45285429	23	3.0	23	93	0	118	22	22	26	29	1.99
45285984--45286033	24	2.0	27	88	11	79	36	12	0	52	1.39
45286120--45286171	27	1.9	27	88	0	77	30	23	30	15	1.95
45286250--45286319	19	3.7	19	83	11	99	38	8	0	52	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45286255--45286325	37	1.9	37	100	0	142	40	9	0	49	1.36
45286545--45286666	19	6.8	19	69	12	89	36	10	1	50	1.47
45286550--45286620	37	1.9	37	94	0	124	39	9	1	49	1.45
45286888--45286927	19	2.2	19	86	4	55	35	7	0	57	1.27
45286291--45287257	343	2.9	331	93	3	1469	33	13	9	43	1.77
45291429--45291518	46	2.0	46	91	4	146	33	12	24	30	1.92
45293742--45293853	25	4.6	24	70	8	82	32	20	25	22	1.98
45298751--45298864	31	3.7	30	74	9	104	39	1	3	55	1.27
45298738--45298867	61	2.1	61	92	0	215	40	1	4	53	1.31
45303311--45303345	17	2.1	17	89	5	54	31	2	22	42	1.68
45304604--45304681	41	1.9	41	91	0	129	26	21	25	25	2.00
45304609--45304693	41	2.1	41	86	0	116	28	21	27	23	1.99
45314063--45314114	20	2.5	22	75	12	63	57	0	9	32	1.31
45314935--45314974	14	2.8	15	85	11	57	72	5	5	17	1.21
45317845--45317955	55	2.0	55	87	3	161	24	7	16	52	1.68
45321677--45321702	5	5.2	5	100	0	52	19	0	0	80	0.71
45322378--45322437	20	3.0	20	68	7	59	31	5	5	58	1.41
45325398--45325442	23	2.0	23	91	4	74	37	6	13	42	1.70
45326414--45326480	29	2.2	31	84	5	84	46	16	4	32	1.67
45326471--45326516	19	2.4	19	96	0	83	30	6	8	54	1.56
45334528--45334682	62	2.9	48	73	23	166	33	6	11	48	1.65
45334534--45334653	62	1.9	62	98	0	231	36	6	10	46	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45334669--45334704	8	4.5	8	100	0	72	27	0	22	50	1.50
45336505--45336541	4	9.2	4	93	0	65	54	0	21	24	1.45
45336567--45336610	23	1.9	23	81	9	54	61	9	0	29	1.27
45340078--45340102	12	2.1	12	100	0	50	72	0	0	28	0.86
45340178--45340234	27	2.3	24	76	23	64	31	28	7	33	1.84
45341595--45341728	40	3.3	40	90	1	196	31	16	30	21	1.95
45341676--45342728	115	9.3	114	93	1	1681	28	18	27	25	1.98
45341679--45342728	568	1.9	567	95	0	1906	28	19	27	24	1.98
45344449--45344645	84	2.3	84	95	0	349	32	21	19	26	1.97
45346267--45346295	11	2.7	11	94	5	51	37	10	24	27	1.88
45347043--45347144	17	5.6	17	79	13	96	48	11	0	39	1.47
45347035--45347157	57	2.2	57	96	0	228	45	9	1	43	1.46
45347044--45347184	74	1.9	75	85	7	198	45	9	2	43	1.48
45347139--45347174	17	2.1	17	100	0	72	41	0	5	52	1.24
45347166--45347210	13	3.5	13	81	0	63	42	6	2	48	1.41
45347470--45347602	25	5.2	25	90	4	203	47	19	0	33	1.50
45353063--45353137	21	3.6	21	85	1	80	33	17	46	2	1.62
45353430--45353567	42	3.2	42	83	6	179	24	19	22	33	1.97
45354157--45354226	20	3.5	20	72	16	65	67	1	1	30	1.08
45356158--45356184	3	9.0	3	100	0	54	66	0	0	33	0.92
45367104--45367180	40	1.9	40	97	0	145	36	27	6	29	1.82
45369249--45369350	30	3.4	31	83	5	122	29	22	3	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45369919--45369971	14	3.8	13	85	14	63	79	0	20	0	0.74
45369922--45369969	10	4.7	10	80	14	53	79	0	20	0	0.74
45369967--45369993	11	2.5	11	100	0	54	70	0	7	22	1.12
45369925--45369972	24	2.0	23	92	8	78	79	0	20	0	0.74
45370581--45370908	36	9.1	37	71	14	206	34	11	10	42	1.76
45370575--45371057	17	27.6	18	70	14	239	33	10	11	44	1.75
45370593--45370790	74	2.7	74	79	9	210	35	12	8	42	1.74
45370618--45371058	35	12.7	34	71	14	219	34	10	11	43	1.75
45372410--45372447	20	1.9	20	84	10	51	71	2	0	26	1.00
45372753--45372784	16	2.0	16	100	0	64	75	0	0	25	0.81
45373803--45373869	28	2.3	30	82	5	84	16	8	38	35	1.80
45373800--45373869	15	4.8	15	82	7	90	15	8	40	35	1.78
45381994--45382031	15	2.5	15	86	0	58	36	34	7	21	1.82
45384788--45384911	46	2.8	46	91	3	200	27	22	16	33	1.96
45384788--45385022	37	5.8	45	87	8	207	26	21	15	36	1.93
45384873--45385049	37	4.8	37	95	0	300	26	20	13	38	1.90
45390396--45390436	19	2.2	19	95	0	73	43	12	4	39	1.63
45396440--45396539	11	8.7	11	66	8	56	29	5	4	62	1.35
45397374--45397441	24	3.1	22	68	24	54	47	1	5	45	1.36
45397374--45397462	42	2.1	42	83	8	110	47	3	4	44	1.40
45399007--45399086	25	3.2	25	80	3	90	38	17	13	30	1.88
45403224--45403249	5	5.2	5	100	0	52	42	19	19	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45404242--45404278	9	4.1	9	92	0	65	29	10	13	45	1.77
45404330--45404364	18	1.9	18	100	0	70	37	17	11	34	1.85
45405780--45405831	21	2.5	21	84	3	70	36	1	40	21	1.64
45409701--45409853	45	3.4	44	78	7	155	36	24	13	25	1.92
45409677--45409853	90	2.0	88	86	4	248	35	25	14	23	1.93
45416615--45416651	9	4.1	9	85	0	56	29	8	13	48	1.71
45416704--45416734	9	3.4	9	90	0	53	38	22	12	25	1.90
45421482--45421511	15	1.9	16	93	6	53	43	0	23	33	1.54
45421874--45421927	9	5.9	9	82	4	63	57	3	0	38	1.17
45421887--45421921	17	2.1	17	89	10	54	60	0	0	40	0.97
45422172--45422230	22	2.7	22	81	0	73	10	18	15	55	1.67
45430299--45430349	26	2.0	26	88	0	75	19	23	21	35	1.96
45430408--45430460	24	2.2	24	83	6	63	16	28	24	30	1.97
45431200--45431237	18	2.1	18	85	9	51	65	7	15	10	1.45
45432100--45432133	7	4.9	7	85	0	50	29	0	0	70	0.87
45432401--45432446	4	12.0	4	79	9	51	23	2	2	71	1.08
45432402--45432452	26	2.0	25	92	3	84	21	1	3	72	1.11
45432669--45432810	71	2.0	71	84	2	187	34	14	16	34	1.89
45432574--45432920	180	1.9	181	88	1	527	31	15	19	34	1.92
45432740--45433070	110	3.0	109	87	2	434	30	16	18	34	1.93
45436575--45436768	51	3.9	50	71	8	153	25	16	27	30	1.97
45436776--45437033	42	6.1	42	81	8	317	21	18	24	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45436775--45437033	84	3.1	84	90	3	396	21	19	24	34	1.96
45444259--45444309	26	2.0	26	88	0	75	19	23	21	35	1.96
45444346--45444410	24	2.7	25	83	7	80	15	27	23	33	1.95
45444438--45444504	25	2.7	25	81	9	82	25	25	16	32	1.96
45444368--45444510	24	5.8	25	72	8	71	20	25	20	33	1.97
45446746--45446789	20	2.2	20	100	0	88	43	9	25	22	1.82
45449523--45449587	30	2.2	30	85	0	85	27	33	23	15	1.95
45449624--45449691	30	2.3	30	86	0	100	26	30	25	17	1.97
45450485--45450533	17	3.0	17	82	5	66	14	4	4	77	1.06
45451255--45451280	13	2.0	13	100	0	52	30	15	23	30	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187