genome.fa.s15.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  148  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44663718--44663798	26	3.2	25	65	19	60	24	13	28	33	1.93
44674129--44674189	27	2.3	26	85	2	77	29	26	24	19	1.99
44674106--44674197	26	3.5	27	77	7	91	28	25	27	19	1.99
44676139--44676401	43	6.1	43	81	5	264	31	29	16	22	1.96
44676128--44676401	129	2.1	129	83	5	349	32	29	16	21	1.95
44681829--44681893	21	3.0	22	76	13	64	23	3	49	24	1.64
44682997--44683043	7	6.6	7	87	2	67	42	53	0	4	1.20
44683218--44683254	7	5.3	7	86	0	56	29	54	0	16	1.43
44683279--44683308	14	2.2	14	94	5	53	46	26	0	26	1.53
44683553--44683619	21	3.1	21	68	19	57	31	13	0	55	1.39
44683695--44683934	41	5.9	41	87	2	279	29	28	21	21	1.98
44683695--44683934	123	2.0	123	84	3	313	29	28	21	21	1.98
44707925--44708019	49	2.0	47	85	4	127	27	21	18	32	1.97
44707974--44708119	50	2.9	50	81	0	166	21	28	21	27	1.99
44715254--44715425	40	4.3	40	88	2	222	25	27	21	25	1.99
44715256--44715478	40	5.6	39	83	5	216	25	27	21	25	1.99
44715254--44715478	80	2.8	79	80	7	240	25	27	21	25	1.99
44715410--44715487	40	1.9	41	82	10	97	26	28	20	24	1.99
44723163--44723427	40	6.7	40	85	5	286	26	27	21	24	1.99
44723130--44723427	80	3.7	80	79	9	263	25	27	21	25	1.99
44723359--44723436	40	1.9	41	82	10	97	26	28	20	24	1.99
44734803--44734843	21	2.0	22	90	9	68	7	21	7	63	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44737472--44737496	12	2.1	12	100	0	50	60	0	0	40	0.97
44743706--44743746	16	2.6	16	88	0	55	58	7	0	34	1.26
44744326--44744370	22	2.1	21	87	4	63	68	11	2	17	1.29
44746544--44746585	21	1.9	22	85	9	59	45	2	9	42	1.49
44747781--44747813	17	2.0	17	88	5	50	27	15	18	39	1.90
44752656--44752720	34	1.9	34	83	0	85	43	7	7	41	1.62
44752692--44753097	18	24.1	17	68	15	188	47	10	14	28	1.76
44752963--44753083	44	3.0	38	82	11	111	47	9	12	31	1.72
44753014--44753065	26	2.0	26	88	7	79	48	9	13	28	1.74
44753120--44753178	30	1.9	31	89	3	93	32	5	11	50	1.61
44753148--44753197	20	2.6	19	75	6	64	34	8	10	48	1.66
44753992--44754026	14	2.5	14	95	0	61	0	17	0	82	0.66
44753985--44754072	25	3.5	25	84	9	99	0	21	0	78	0.75
44754004--44754078	14	5.6	14	77	19	63	0	22	0	77	0.77
44753984--44754078	13	7.8	12	76	16	90	0	22	0	77	0.76
44754598--44754766	30	5.7	29	76	13	116	44	6	20	28	1.76
44754628--44754764	30	4.7	29	78	11	120	42	7	21	29	1.79
44754834--44754880	6	8.0	6	95	4	87	82	0	0	17	0.66
44755184--44755680	74	6.5	76	88	5	652	35	20	15	28	1.93
44756533--44756566	10	3.4	10	95	0	59	0	2	5	91	0.51
44767513--44767577	34	1.9	34	87	0	94	43	9	7	40	1.65
44767516--44767954	18	26.1	17	67	16	177	45	10	13	31	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44767648--44767774	65	2.0	65	84	4	168	40	11	12	35	1.79
44767801--44767940	44	3.6	38	78	16	112	47	7	12	32	1.68
44767863--44767915	26	2.1	25	85	3	70	52	7	15	24	1.68
44767871--44767922	26	2.0	26	92	7	88	48	7	13	30	1.71
44767904--44767954	15	3.1	15	86	13	66	49	11	13	25	1.76
44768013--44768062	18	2.7	20	82	17	72	46	12	14	28	1.79
44768505--44768543	13	3.0	12	85	14	51	0	20	0	79	0.73
44768872--44768958	26	3.4	25	83	15	106	0	22	0	77	0.78
44768871--44768958	13	6.8	12	81	11	95	0	22	0	77	0.77
44768873--44768961	12	7.2	12	75	20	69	0	23	0	76	0.79
44768871--44768961	25	3.5	26	75	21	86	0	23	0	76	0.78
44769055--44769085	16	2.0	15	93	6	53	0	29	0	70	0.87
44769544--44769614	30	2.4	31	76	9	76	43	4	19	32	1.70
44769714--44769754	6	7.0	6	94	5	75	82	0	0	17	0.66
44769713--44769753	11	3.4	12	78	21	50	85	0	0	14	0.60
44769707--44769753	18	2.6	18	89	3	67	85	2	0	12	0.70
44769876--44769905	13	2.2	14	94	5	53	80	0	0	20	0.72
44771807--44771918	10	11.7	9	69	10	62	62	0	2	33	1.15
44771816--44771918	30	3.6	29	72	12	86	61	0	2	34	1.18
44772213--44772289	30	2.6	28	78	9	82	33	1	3	61	1.23
44774005--44774071	18	3.7	18	91	2	98	56	2	0	40	1.14
44773985--44774080	18	5.3	19	82	7	94	58	3	0	38	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44774072--44774122	26	1.9	27	84	4	68	50	5	0	43	1.26
44775726--44775754	3	9.7	3	100	0	58	31	0	0	68	0.89
44779972--44780088	38	3.1	38	89	0	171	14	16	29	39	1.88
44786975--44787190	114	1.9	114	84	1	290	14	17	30	37	1.90
44786972--44787190	38	5.8	38	86	2	251	15	17	30	37	1.90
44805578--44805996	138	3.1	136	87	3	626	45	5	7	41	1.56
44805578--44805996	136	3.1	136	87	2	626	45	5	7	41	1.56
44812773--44812798	11	2.4	11	100	0	52	0	42	7	50	1.31
44813156--44813198	21	2.0	21	81	0	50	58	6	0	34	1.25
44816498--44816625	33	3.6	34	69	24	93	19	17	26	35	1.94
44816419--44816691	75	3.6	75	90	2	406	22	16	26	34	1.95
44830597--44830930	51	6.6	50	76	5	269	28	25	16	29	1.97
44830587--44830925	102	3.3	102	81	2	326	29	25	15	29	1.96
44836418--44836466	25	2.0	25	87	0	71	34	14	18	32	1.91
44838951--44838984	18	1.9	17	88	5	50	14	29	41	14	1.86
44839208--44839437	115	2.0	115	100	0	460	26	15	24	33	1.95
44842501--44842581	41	2.0	41	90	4	128	28	24	27	19	1.99
44844097--44844214	5	23.8	5	96	1	220	40	0	19	39	1.52
44846626--44846660	16	2.2	16	90	10	54	37	5	11	45	1.64
44848313--44848347	18	1.9	18	88	0	52	71	0	14	14	1.15
44850259--44850570	158	2.0	157	87	0	444	32	12	16	38	1.86
44852889--44852992	24	4.2	24	65	16	68	27	49	2	20	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44852961--44853110	81	1.9	81	88	2	230	29	45	1	24	1.61
44853079--44853177	48	2.1	48	88	0	144	33	41	0	25	1.56
44853620--44853662	14	2.9	15	79	10	52	62	11	13	11	1.54
44854094--44854225	29	4.5	29	80	9	142	54	28	0	16	1.48
44854110--44854161	14	3.6	14	78	12	61	57	26	0	15	1.38
44854094--44854225	58	2.3	58	81	9	160	54	28	0	16	1.48
44854095--44854269	30	6.0	29	80	12	160	53	30	0	16	1.47
44854095--44854276	59	3.1	57	78	9	145	53	29	0	16	1.47
44856981--44857028	24	2.0	24	87	0	69	35	18	0	45	1.50
44858780--44858812	2	16.5	2	100	0	66	0	48	0	51	1.00
44859242--44859305	27	2.4	28	86	7	96	10	10	51	26	1.70
44859282--44859400	39	3.1	39	98	0	229	12	12	48	26	1.76
44859505--44859539	12	2.9	12	91	0	52	8	0	60	31	1.27
44861849--44861931	20	4.1	21	79	10	93	59	1	0	39	1.05
44861913--44861961	6	8.3	6	84	10	57	51	0	0	48	1.00
44861849--44861931	40	2.0	41	88	6	125	59	1	0	39	1.05
44861913--44861967	18	3.1	18	73	21	53	50	0	0	49	1.00
44862358--44862818	230	2.0	230	100	0	922	29	19	6	44	1.75
44863026--44863102	29	2.6	29	83	4	91	48	14	12	24	1.79
44863431--44863487	26	2.4	23	80	11	62	28	0	1	70	0.98
44863446--44863515	10	7.0	10	70	6	52	32	1	1	64	1.11
44865737--44865796	29	2.1	29	87	6	86	28	5	16	50	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44869360--44869447	26	3.3	26	82	3	104	59	5	5	29	1.44
44869392--44869454	26	2.6	22	75	20	63	55	7	6	30	1.54
44869420--44869474	21	2.6	22	83	11	62	54	7	5	32	1.51
44870450--44870489	19	2.1	19	85	4	53	12	5	7	75	1.18
44872519--44872588	25	2.8	25	86	0	104	22	15	24	37	1.93
44872519--44872666	62	2.7	50	75	21	161	25	14	24	36	1.93
44872575--44872600	12	2.2	12	100	0	52	23	15	26	34	1.94
44872525--44872649	62	2.0	62	100	0	250	25	14	24	36	1.93
44872591--44872666	25	3.0	25	80	0	98	27	11	23	36	1.90
44875408--44875444	9	4.1	9	92	0	65	45	13	10	29	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187