genome.fa.s15.2.7.7.80.10.50.1000.176.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  176  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53819446--53819471	3	8.7	3	100	0	52	30	0	0	69	0.89
53819967--53820080	56	2.0	56	87	0	165	35	21	10	33	1.87
53822540--53822659	62	2.0	62	86	5	172	31	6	16	45	1.74
53825207--53825247	20	2.0	21	85	4	57	26	17	4	51	1.65
53830033--53830086	23	2.3	23	96	0	99	29	9	22	38	1.85
53835972--53836017	6	7.7	6	88	7	58	58	0	23	17	1.38
53835972--53836016	18	2.4	19	88	3	65	60	0	24	15	1.36
53835995--53836105	51	2.3	49	78	10	129	51	8	14	26	1.70
53849973--53850107	27	5.0	27	86	1	189	41	18	17	22	1.90
53850494--53850585	28	2.9	31	76	18	93	23	25	25	26	2.00
53850505--53850564	28	2.2	27	93	3	102	23	25	25	26	2.00
53852157--53852213	26	2.2	26	96	0	105	33	21	22	22	1.97
53854278--53854318	20	1.9	23	85	14	61	24	9	17	48	1.76
53863935--53863979	17	2.6	17	82	10	56	62	8	17	11	1.53
53869963--53869996	12	2.8	12	87	12	52	61	0	23	14	1.33
53873104--53873660	50	11.1	49	95	1	920	34	7	26	31	1.85
53873834--53873912	37	2.1	37	88	4	115	25	18	30	25	1.98
53877115--53877386	137	2.0	136	84	5	361	33	26	20	19	1.96
53884955--53885051	42	2.3	42	94	0	167	36	11	26	25	1.90
53899294--53899493	100	2.0	100	92	0	328	31	18	10	40	1.84
53906045--53906348	40	7.7	37	83	8	295	26	21	26	25	2.00
53906045--53906348	79	3.8	80	91	3	447	26	21	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53906045--53906348	119	2.6	119	83	9	377	26	21	26	25	2.00
53914137--53914187	23	2.2	23	92	0	84	27	9	21	41	1.84
53915672--53915958	50	5.6	50	79	3	245	23	28	20	27	1.99
53915745--53916004	100	2.5	103	79	6	262	23	28	20	27	1.99
53917021--53917076	25	2.3	24	82	17	64	30	23	1	44	1.63
53918149--53918199	20	2.5	20	93	3	84	50	11	9	27	1.70
53919070--53919119	23	2.2	23	96	0	91	24	10	22	44	1.83
53920234--53920347	43	2.7	42	75	12	110	28	23	16	31	1.96
53920274--53920390	41	2.8	42	76	6	121	28	26	16	29	1.97
53920511--53920645	31	4.4	31	86	0	182	44	18	8	28	1.78
53921230--53921259	11	2.9	10	90	9	51	70	0	3	26	1.03
53922990--53923326	40	8.5	40	80	3	286	19	30	16	33	1.94
53923066--53923351	80	3.6	80	81	1	315	19	29	15	34	1.93
53923164--53923269	20	5.3	20	72	4	88	13	30	17	38	1.88
53938942--53939198	30	8.6	30	78	5	164	36	12	26	23	1.91
53938890--53939083	90	2.2	90	78	1	210	34	11	27	26	1.91
53939070--53939142	29	2.5	30	93	2	121	39	12	31	16	1.85
53938890--53939198	60	5.2	60	73	6	252	36	12	26	24	1.91
53940988--53941180	41	4.7	42	84	3	223	32	13	30	23	1.93
53940988--53941180	83	2.4	81	82	1	224	32	13	30	23	1.93
53942578--53942793	107	2.0	107	91	0	351	26	6	22	43	1.78
53948800--53948987	50	3.6	50	83	4	205	26	19	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53948802--53948987	100	1.8	103	81	6	234	26	19	28	25	1.99
53948903--53949031	50	2.6	50	78	8	129	30	22	22	24	1.99
53955528--53955591	25	2.6	25	84	0	83	31	18	20	29	1.96
53955531--53955619	25	3.5	26	75	14	71	30	20	21	28	1.98
53958741--53958815	34	2.2	34	85	4	98	46	29	1	22	1.60
53959243--53959291	25	2.0	25	84	4	64	48	8	22	20	1.75
53960742--53960807	4	16.5	4	96	0	123	50	25	0	24	1.50
53961536--53961657	65	1.9	65	92	0	208	45	16	21	16	1.85
53961740--53961809	26	2.8	25	89	6	97	35	21	24	18	1.95
53961740--53961813	25	2.9	26	90	6	107	35	21	24	18	1.96
53961747--53961827	25	3.2	24	79	8	81	35	19	27	17	1.94
53961986--53962018	16	2.1	16	94	0	57	24	24	30	21	1.99
53965879--53965980	52	2.0	52	88	0	150	31	9	24	34	1.88
53968449--53968485	18	2.1	18	100	0	74	35	5	27	32	1.79
53975913--53976244	50	6.6	50	90	1	475	24	23	31	21	1.98
53975913--53976244	101	3.3	101	93	0	540	24	23	31	21	1.98
53975913--53976228	151	2.1	152	89	1	483	24	23	31	20	1.98
53985733--53985764	16	2.0	16	93	0	55	40	9	0	50	1.35
53986289--53986320	9	3.6	9	91	0	55	40	25	0	34	1.56
53999612--53999756	40	3.6	40	85	4	193	25	24	26	23	2.00
54013966--54013999	16	2.1	16	88	0	50	23	2	26	47	1.66
54014798--54014841	19	2.2	20	84	8	54	75	0	22	2	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54017000--54017035	5	7.0	5	96	3	63	19	0	0	80	0.71
54028342--54028389	18	2.7	18	86	0	69	33	10	14	41	1.80
54028744--54028910	72	2.3	72	87	3	239	24	6	13	55	1.61
54030736--54030801	30	2.2	28	82	12	80	54	1	1	42	1.18
54030736--54030801	28	2.2	30	82	12	84	54	1	1	42	1.18
54030964--54031001	13	2.9	13	100	0	76	39	28	7	23	1.83
54034914--54034949	16	2.3	16	90	4	56	8	22	5	63	1.43
54035217--54035334	21	5.6	21	82	4	157	25	20	26	27	1.99
54035869--54035894	13	2.0	13	100	0	52	15	15	7	61	1.55
54047131--54047176	5	9.2	5	97	0	65	6	13	0	80	0.89
54047133--54047190	5	11.2	5	90	7	53	10	10	0	79	0.94
54047136--54047199	20	2.9	23	77	13	64	10	10	0	78	0.98
54047156--54047199	12	3.8	12	88	11	74	15	6	0	77	0.97
54048576--54048651	18	4.2	17	88	6	80	2	3	10	82	0.89
54048576--54048639	6	10.7	6	94	0	110	0	3	12	84	0.74
54051604--54051644	21	2.0	21	90	0	64	51	9	12	26	1.70
54053140--54053168	3	9.7	3	100	0	58	34	0	34	31	1.58
54055062--54055095	14	2.4	14	95	0	59	52	41	5	0	1.25
54055586--54055641	29	1.9	29	85	7	78	30	3	3	62	1.29
54056620--54056738	54	2.2	54	83	3	150	19	31	23	25	1.98
54058533--54059670	569	2.0	569	98	0	2213	32	11	4	52	1.57
54059900--54060139	129	1.9	129	100	0	480	29	19	16	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54065651--54066533	50	17.7	50	66	6	293	32	23	20	24	1.98
54065648--54066589	100	9.4	100	84	2	1092	31	23	20	24	1.98
54065648--54066589	300	3.1	299	85	2	1259	31	23	20	24	1.98
54066572--54066611	19	2.1	19	100	0	80	17	42	10	30	1.82
54072377--54072451	30	2.6	30	76	4	82	22	33	32	12	1.91
54085052--54085103	24	2.2	24	89	0	77	32	7	7	51	1.59
54108476--54108596	22	5.5	22	76	0	116	44	21	23	9	1.82
54108476--54108570	44	2.2	44	88	0	136	44	21	23	11	1.84
54109073--54109127	19	2.8	19	81	13	67	23	12	3	60	1.49
54124478--54124536	11	5.3	11	72	24	52	61	5	1	32	1.28
54129483--54129563	25	3.2	25	75	14	78	34	17	23	24	1.96
54141923--54141981	13	4.4	13	74	21	50	13	3	3	79	0.98
54141923--54141973	7	7.1	7	77	16	52	11	3	1	82	0.89
54141940--54141990	25	2.1	24	82	10	59	15	1	3	78	0.99
54142950--54142979	13	2.4	13	94	5	53	86	0	13	0	0.57
54146213--54146271	25	2.4	25	80	11	75	35	22	16	25	1.95
54146258--54146335	25	3.1	25	74	7	86	32	16	28	23	1.96
54154369--54154463	48	2.0	48	91	0	154	44	16	16	22	1.87
54155695--54155887	50	3.8	50	91	0	305	24	23	31	20	1.98
54163494--54163529	9	4.3	9	80	20	51	33	0	0	66	0.92
54163488--54163526	15	2.6	15	92	8	62	35	0	0	64	0.94
54164818--54164856	19	2.0	20	90	5	62	43	2	12	41	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54164818--54164888	22	3.4	22	81	11	69	36	2	14	46	1.59
54167450--54167640	50	3.8	50	90	2	285	21	29	23	24	1.99
54169447--54169496	24	2.0	25	84	3	66	34	20	28	18	1.95
54171805--54171843	19	2.1	19	85	0	51	38	2	0	58	1.12
54172381--54172421	12	3.3	12	80	6	55	63	0	2	34	1.08
54172370--54172421	25	2.0	25	92	7	86	63	0	3	32	1.12
54172441--54172479	19	2.1	19	95	0	69	41	10	17	30	1.83
54172773--54172837	5	13.0	5	98	0	94	26	13	0	60	1.34
54176891--54177027	71	1.9	71	93	0	238	24	17	17	40	1.91
54178655--54178679	12	2.1	12	100	0	50	24	8	16	52	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187