genome.fa.s15.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  120  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35546173--35546221	15	3.3	15	82	8	64	46	30	0	22	1.52
35546561--35546668	40	2.7	40	91	2	173	25	23	22	29	1.99
35546688--35546867	94	1.9	93	89	3	281	21	21	22	34	1.97
35546798--35546907	39	2.8	39	88	2	159	22	24	25	27	2.00
35546935--35547022	40	2.2	40	93	0	149	23	25	21	29	1.99
35548102--35548145	18	2.3	20	88	11	67	59	0	4	36	1.18
35552997--35553125	40	3.2	39	84	8	170	29	20	21	27	1.98
35553446--35553539	7	13.6	7	83	4	93	15	1	32	50	1.52
35561510--35561561	26	2.0	26	88	7	79	15	19	25	40	1.90
35561572--35561630	25	2.4	25	80	5	66	27	28	15	28	1.96
35561588--35561639	25	2.1	25	85	7	70	25	28	15	30	1.96
35562944--35562988	23	2.0	23	100	0	90	31	26	24	17	1.97
35563076--35563104	8	3.6	8	100	0	58	34	27	13	24	1.93
35569225--35569492	67	4.0	67	86	3	353	22	23	15	39	1.92
35577415--35577598	40	4.6	41	81	12	208	25	22	27	25	2.00
35577415--35577598	79	2.3	81	82	11	222	25	22	27	25	2.00
35577467--35577631	79	2.1	79	82	8	194	26	21	27	24	1.99
35581164--35581385	117	1.9	117	88	1	338	43	18	7	30	1.77
35582352--35582455	40	2.6	40	86	4	140	36	25	22	16	1.94
35583038--35583086	14	3.4	14	80	8	55	26	0	40	32	1.56
35583219--35583270	21	2.4	21	83	3	59	28	0	40	30	1.57
35583237--35583276	21	1.9	21	84	0	53	30	2	37	30	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35584733--35584767	3	11.7	3	100	0	70	31	0	0	68	0.90
35588524--35588579	27	2.1	27	82	0	67	28	5	1	64	1.26
35588769--35588908	42	3.3	43	82	2	158	22	17	32	27	1.97
35598021--35598078	27	2.2	26	81	3	62	27	5	1	65	1.23
35598265--35598596	43	7.7	43	86	0	432	24	18	32	24	1.97
35601654--35601692	19	2.1	19	100	0	78	64	5	15	15	1.46
35602217--35602292	39	1.9	39	94	0	134	46	18	6	28	1.74
35602402--35602454	20	2.7	20	73	5	54	66	9	1	22	1.31
35602500--35602574	38	1.9	39	81	7	91	36	5	14	44	1.68
35602819--35602858	18	2.2	18	91	8	64	27	0	7	65	1.20
35614572--35614615	22	2.0	23	90	4	72	47	9	9	34	1.67
35614693--35614734	12	3.5	12	93	0	75	40	16	9	33	1.81
35625175--35625471	150	2.0	150	96	0	549	43	11	12	32	1.77
35629570--35629599	15	2.0	15	100	0	60	20	13	6	60	1.55
35630043--35630140	12	8.1	12	73	10	56	74	7	10	8	1.22
35630059--35630127	6	11.7	6	84	3	59	72	8	7	11	1.28
35630053--35630128	29	2.5	30	80	6	82	73	7	7	10	1.24
35630047--35630135	35	2.4	36	88	7	126	74	7	8	8	1.23
35630037--35630128	41	2.3	41	84	1	114	75	7	8	8	1.21
35630036--35630141	47	2.2	47	83	6	124	74	6	11	7	1.21
35630503--35630532	7	4.4	7	91	8	53	66	0	16	16	1.25
35630503--35630529	13	2.1	13	100	0	54	70	0	14	14	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35631745--35632632	87	10.3	87	91	1	1374	28	22	24	24	1.99
35631745--35632632	173	5.1	173	90	1	1356	28	22	24	24	1.99
35631745--35632632	260	3.4	260	93	0	1478	28	22	24	24	1.99
35632879--35633037	44	3.6	43	76	5	140	28	19	23	27	1.98
35645286--35645548	40	6.6	40	87	3	309	26	28	20	23	1.99
35653227--35653494	40	6.7	40	96	0	473	22	28	20	29	1.98
35661140--35661189	20	2.5	20	75	15	59	12	20	8	60	1.57
35661393--35661537	50	2.9	50	80	10	170	23	31	22	23	1.99
35661494--35661645	56	2.7	56	90	0	250	26	28	15	28	1.96
35664618--35664657	21	1.9	21	90	10	64	55	7	12	25	1.63
35671120--35671289	50	3.4	50	81	3	200	21	28	23	27	1.99
35674567--35675742	583	2.0	585	96	0	2149	32	21	15	30	1.95
35685575--35685716	26	5.6	25	68	15	85	59	4	7	29	1.43
35685628--35685676	22	2.3	22	85	3	64	63	2	4	30	1.24
35685845--35685912	25	2.7	26	79	9	68	61	1	4	32	1.24
35685871--35685936	21	3.0	22	84	13	82	63	0	1	34	1.04
35685899--35685955	29	2.0	29	86	6	80	68	1	1	28	1.09
35686807--35686893	43	2.0	43	97	0	165	28	22	18	29	1.97
35687034--35687596	89	6.3	89	87	1	729	23	24	24	27	2.00
35687076--35687569	45	11.1	45	65	15	206	23	24	23	27	2.00
35699178--35699247	24	2.9	23	79	10	59	57	5	10	27	1.54
35699174--35699304	26	5.1	26	75	12	108	60	5	6	27	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35699504--35699571	25	2.7	26	81	9	77	61	2	4	30	1.30
35699525--35699593	25	3.1	21	84	12	77	66	1	2	28	1.14
35699530--35699601	21	3.2	21	76	21	67	66	0	2	30	1.06
35702954--35703014	29	2.1	28	82	8	70	26	13	16	44	1.84
35706865--35706925	29	2.1	28	82	8	70	26	13	16	44	1.84
35718745--35718804	27	2.2	26	80	13	68	5	30	1	63	1.25
35725172--35725214	22	1.9	22	85	4	59	60	2	4	32	1.30
35727253--35727328	24	3.1	24	84	5	100	15	26	23	34	1.95
35733207--35733333	54	2.4	54	80	6	141	26	25	29	18	1.98
35736621--35736668	25	1.9	25	91	0	78	16	27	18	37	1.92
35736613--35736678	25	2.6	25	77	13	73	22	25	19	31	1.98
35738513--35738550	2	19.0	2	100	0	76	50	50	0	0	1.00
35746749--35746822	37	2.0	37	100	0	148	32	21	13	32	1.92
35749102--35749160	28	2.1	29	87	9	86	50	0	0	49	1.00
35749526--35749569	17	2.5	17	81	3	52	65	0	6	27	1.17
35749982--35750140	87	1.9	83	88	5	237	37	7	14	40	1.74
35750672--35751241	285	2.0	285	99	0	1131	23	32	16	27	1.96
35755697--35755753	30	1.9	30	85	0	78	31	26	17	24	1.97
35757598--35757632	17	2.1	17	88	0	52	74	0	8	17	1.06
35758239--35758281	18	2.5	17	76	3	50	32	0	4	62	1.15
35763051--35763093	21	2.0	21	100	0	86	51	18	9	20	1.74
35766259--35766325	23	2.9	23	95	0	116	29	29	4	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35766638--35766667	15	2.0	15	93	0	51	66	0	10	23	1.21
35766650--35766700	22	2.3	22	86	6	68	72	3	3	19	1.16
35766650--35766747	23	4.2	23	70	16	76	69	3	8	19	1.27
35768821--35768864	20	2.2	21	88	8	65	77	2	13	6	1.07
35773055--35773121	23	2.9	23	95	0	116	29	29	4	35	1.77
35773719--35773748	15	2.0	15	93	0	51	30	20	36	13	1.90
35784315--35784348	16	2.1	16	88	5	50	8	0	14	76	1.01
35791285--35791322	20	2.0	20	84	5	51	34	7	0	57	1.28
35805339--35805449	47	2.4	47	80	3	125	37	23	12	26	1.90
35823157--35823225	28	2.5	28	85	0	93	23	26	27	23	2.00
35823575--35823780	27	7.6	27	81	3	218	18	18	19	42	1.90
35823585--35823780	81	2.4	81	85	5	245	18	19	19	42	1.89
35824457--35824539	25	3.4	25	70	9	89	54	4	36	4	1.43
35824440--35824549	49	2.2	48	90	4	175	57	4	33	4	1.39
35824458--35824534	23	3.2	23	66	16	66	53	5	36	5	1.46
35829751--35829784	18	1.9	18	88	5	52	17	23	11	47	1.81
35830977--35831067	27	3.4	27	85	0	119	18	17	20	42	1.89
35831751--35831785	10	3.5	10	92	0	52	71	0	28	0	0.86
35834081--35834144	32	2.0	32	100	0	128	40	3	21	34	1.69
35835569--35835594	13	2.0	13	100	0	52	61	0	15	23	1.33
35838892--35838958	25	2.7	25	85	0	89	34	17	20	26	1.96
35841879--35842116	50	4.7	50	82	5	239	22	26	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35841879--35842116	100	2.3	103	81	7	263	22	26	21	29	1.99
35843399--35843475	39	2.0	39	100	0	154	31	16	12	38	1.87
35844824--35844866	13	3.3	13	83	0	59	32	20	6	39	1.80
35858652--35858734	30	2.8	30	90	0	130	27	27	10	33	1.90
35862445--35862541	30	3.2	30	75	2	106	28	15	26	28	1.96
35864722--35864752	12	2.6	12	100	0	62	25	16	12	45	1.83
35864800--35864862	5	12.0	5	78	18	58	3	17	1	77	0.97
35864802--35864853	21	2.4	21	83	3	68	3	15	1	78	0.98
35864813--35864862	6	8.2	6	81	16	50	2	18	2	78	0.95
35864802--35864862	12	5.7	11	75	17	58	3	16	1	78	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187