genome.fa.s15.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  164  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49808530--49808573	3	14.7	3	100	0	88	68	0	0	31	0.90
49815005--49815152	58	2.5	57	83	10	183	22	12	12	52	1.73
49815268--49815315	25	1.9	25	83	8	62	45	4	10	39	1.58
49815809--49816185	136	2.8	136	85	2	479	25	22	18	33	1.97
49816551--49816627	39	2.0	39	97	0	145	27	7	20	44	1.79
49817773--49817816	3	14.7	3	100	0	88	68	0	0	31	0.90
49827263--49827319	29	2.0	29	96	0	105	24	15	5	54	1.62
49833536--49833564	14	2.0	15	93	6	51	20	6	6	65	1.40
49834501--49834550	26	1.9	26	84	8	66	58	2	0	40	1.10
49838747--49838798	24	2.2	24	85	0	68	50	11	3	34	1.57
49839796--49839846	27	1.9	27	84	4	68	66	13	7	11	1.43
49844473--49844512	15	2.9	14	85	10	55	67	0	2	30	1.04
49844975--49845016	19	2.2	19	87	8	59	69	2	0	28	1.01
49844984--49845016	9	3.7	9	88	11	50	69	0	0	30	0.88
49847477--49847674	99	2.0	99	97	0	378	40	17	11	30	1.85
49847608--49847751	78	1.8	78	86	2	209	39	15	12	31	1.85
49849125--49849162	19	2.1	18	85	9	51	42	7	2	47	1.46
49849386--49849410	13	1.9	13	100	0	50	16	4	0	80	0.87
49851170--49851238	14	4.9	14	74	0	57	17	17	11	53	1.72
49856502--49856554	26	2.1	26	86	10	74	26	7	7	58	1.52
49856502--49856562	25	2.4	25	81	5	70	27	6	6	59	1.48
49857551--49857590	21	2.0	21	85	5	55	42	2	2	52	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49857634--49857679	24	1.9	24	82	8	58	47	10	19	21	1.80
49861855--49861880	13	2.0	13	100	0	52	23	30	30	15	1.95
49864058--49864105	24	2.0	24	91	0	78	41	14	31	12	1.83
49864649--49864705	21	2.6	22	75	13	55	33	1	17	47	1.58
49864868--49865012	54	2.7	54	82	2	175	27	24	24	23	2.00
49864984--49865066	42	2.0	42	88	4	123	26	22	28	21	1.99
49865188--49865899	358	2.0	358	91	1	1158	28	13	19	38	1.90
49867027--49867076	22	2.2	23	82	7	57	14	12	0	74	1.09
49867103--49867144	17	2.6	15	88	11	57	23	2	2	71	1.10
49867105--49867159	21	2.6	22	78	16	62	18	3	3	74	1.11
49867150--49867234	6	13.7	6	81	7	80	5	4	9	80	1.03
49876815--49876851	14	2.6	14	86	0	56	18	0	32	48	1.49
49878554--49878586	9	3.7	9	84	15	50	54	9	0	36	1.32
49878554--49878588	18	1.9	18	100	0	70	51	11	0	37	1.38
49881782--49881861	25	3.2	25	100	0	160	35	22	16	26	1.95
49885310--49885380	18	4.1	18	71	15	60	49	1	22	26	1.58
49886451--49886510	30	2.0	30	90	0	93	18	26	31	23	1.97
49887571--49887595	13	1.9	13	100	0	50	40	8	12	40	1.72
49887959--49888004	21	2.2	21	88	7	67	43	4	2	50	1.34
49892723--49892842	34	3.5	34	83	8	154	33	34	11	20	1.89
49900388--49900431	11	4.0	11	82	8	54	34	0	2	63	1.07
49908659--49908712	25	2.1	26	83	10	67	29	3	3	62	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49914759--49914797	16	2.4	16	95	0	69	30	0	23	46	1.53
49921921--49921974	9	5.8	9	81	14	56	38	0	0	61	0.96
49921910--49921974	19	3.4	19	77	12	62	38	3	0	58	1.14
49922040--49922101	21	3.2	19	76	17	56	27	1	6	64	1.27
49922051--49922102	21	2.5	21	78	6	61	28	1	5	63	1.28
49927684--49927711	5	5.6	5	100	0	56	64	35	0	0	0.94
49932849--49932876	6	4.7	6	100	0	56	85	14	0	0	0.59
49934057--49934126	36	1.9	37	85	2	97	27	8	7	57	1.55
49939800--49939836	17	2.2	17	90	0	56	43	32	8	16	1.77
49941397--49941642	41	5.9	41	82	4	242	30	25	20	23	1.98
49941397--49941642	85	2.9	83	78	3	260	30	25	20	23	1.98
49941423--49941688	128	2.1	125	83	4	336	29	26	20	23	1.99
49941446--49941659	43	5.0	43	74	8	152	28	27	20	23	1.99
49942075--49942125	21	2.4	21	83	0	66	1	45	15	37	1.58
49943524--49944813	645	2.0	645	100	0	2580	33	18	14	33	1.91
49948313--49948410	20	5.0	21	75	15	102	42	5	5	46	1.47
49948279--49948398	57	2.1	57	92	0	195	42	4	7	45	1.51
49948313--49948429	20	6.0	20	72	15	93	41	4	5	48	1.45
49948292--49948411	57	2.1	57	96	0	222	41	4	6	47	1.49
49949255--49949289	13	2.7	13	100	0	70	40	17	8	34	1.80
49950607--49950642	15	2.3	16	90	4	56	36	2	0	61	1.11
49950768--49950812	21	2.1	21	87	0	63	48	33	2	15	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49950780--49950842	21	3.0	21	83	0	72	44	36	1	17	1.59
49950780--49950842	7	9.0	7	73	0	54	44	36	1	17	1.59
49950921--49950996	21	3.6	21	73	16	75	52	30	0	17	1.44
49950921--49950963	22	2.0	21	90	4	68	53	30	0	16	1.43
49951704--49952172	227	2.1	229	86	2	649	23	20	20	35	1.96
49951698--49952195	114	4.4	113	85	3	624	23	21	20	35	1.96
49955561--49955832	43	6.4	42	79	7	264	26	29	18	25	1.98
49955561--49955870	43	7.3	43	81	6	247	27	30	18	24	1.98
49955561--49955872	128	2.4	129	82	3	362	27	29	17	24	1.98
49955561--49955846	86	3.3	84	82	4	333	26	29	18	25	1.98
49957110--49957153	22	2.0	22	90	0	70	9	18	27	45	1.79
49957276--49957421	44	3.3	44	93	0	240	23	19	28	27	1.99
49957279--49957634	43	8.3	43	80	4	227	26	27	22	24	2.00
49957405--49957613	85	2.5	84	82	3	240	27	32	19	21	1.97
49957405--49957653	128	1.9	128	81	3	295	28	31	18	20	1.97
49957492--49957659	86	2.0	85	81	1	201	27	30	18	23	1.98
49957984--49958041	21	2.8	21	89	0	89	5	46	13	34	1.66
49958052--49958096	21	2.1	21	87	0	63	2	40	17	40	1.62
49958072--49958232	66	2.4	66	87	4	218	13	27	19	39	1.89
49966841--49966968	9	13.8	9	72	21	70	38	0	14	47	1.44
49966835--49966914	31	2.6	31	96	2	144	38	0	12	48	1.41
49966901--49966933	16	2.1	16	100	0	66	30	0	24	45	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49966870--49966967	47	2.0	49	86	5	137	36	0	15	47	1.45
49967032--49967064	16	2.1	16	100	0	66	30	18	0	51	1.46
49967962--49968024	33	1.9	33	93	0	108	65	14	0	20	1.27
49967978--49968016	19	2.0	19	85	5	51	69	10	0	20	1.17
49968357--49968663	141	2.2	141	100	0	614	45	11	12	29	1.78
49969660--49969713	23	2.5	22	82	8	58	44	0	7	48	1.31
49970462--49970861	89	4.5	89	100	0	800	45	25	2	28	1.65
49970866--49970898	14	2.5	13	95	5	57	39	42	0	18	1.50
49971480--49971867	41	9.5	41	94	1	611	32	25	21	20	1.98
49971918--49972038	40	3.0	40	72	6	109	23	20	19	37	1.94
49972435--49972460	5	5.2	5	100	0	52	19	0	0	80	0.71
49973522--49973576	12	4.7	12	75	20	53	43	7	0	49	1.30
49973513--49973601	35	2.6	36	78	10	114	41	5	1	51	1.32
49973534--49973693	58	2.8	58	98	0	302	39	5	1	53	1.32
49973970--49974002	14	2.4	14	90	10	50	33	42	0	24	1.55
49973979--49974020	15	2.9	15	85	3	50	35	45	0	19	1.50
49974239--49974293	14	3.9	14	75	13	58	34	38	3	23	1.73
49974255--49974293	14	2.7	14	88	4	60	35	41	5	17	1.72
49974322--49974348	14	1.9	14	100	0	54	37	37	0	25	1.57
49988231--49988268	15	2.5	15	84	12	51	50	0	0	50	1.00
49991390--49991423	14	2.4	14	90	0	50	73	2	0	23	0.97
49991974--49992047	34	2.2	34	83	7	98	31	2	16	50	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50004996--50005069	38	1.9	38	94	0	130	36	17	2	43	1.64
50010574--50010773	35	5.6	35	70	14	113	30	21	11	36	1.89
50010537--50010765	108	2.1	108	85	1	298	31	20	10	36	1.87
50010908--50010999	36	2.6	36	84	6	123	36	9	13	40	1.77
50010645--50010957	135	2.3	135	84	0	401	33	18	10	37	1.85
50012128--50012179	26	2.0	26	100	0	104	57	7	0	34	1.27
50014202--50014257	27	2.0	28	93	6	96	32	0	10	57	1.33
50015463--50015506	23	2.0	23	95	4	81	34	18	38	9	1.82
50022591--50022630	14	2.9	14	84	0	53	42	17	7	32	1.77
50022556--50022622	34	1.9	35	87	3	100	44	13	10	31	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187