genome.fa.s15.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  40  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11761711--11761843	41	3.2	41	93	0	212	24	21	24	29	1.99
11765899--11766065	20	8.4	20	68	9	90	11	32	20	34	1.89
11768715--11768786	28	2.6	28	82	2	83	27	25	13	33	1.94
11784148--11784201	25	2.3	25	75	18	62	53	7	3	35	1.47
11785630--11785664	13	2.7	13	90	0	61	42	28	28	0	1.56
11799262--11799297	18	2.0	18	94	0	63	58	0	8	33	1.28
11822637--11823127	245	2.0	245	97	0	919	38	17	19	24	1.93
11830855--11830942	37	2.3	38	82	7	97	52	3	4	39	1.39
11832369--11832573	44	4.5	44	85	8	286	30	22	14	32	1.94
11839346--11839528	42	4.5	39	83	10	120	44	5	4	45	1.48
11839372--11839529	42	3.8	42	93	0	244	41	6	5	46	1.53
11845730--11845756	4	6.8	4	100	0	54	77	0	22	0	0.76
11845724--11845796	12	6.1	12	73	20	55	71	1	26	1	1.02
11846674--11846811	40	3.5	40	79	6	156	27	17	24	30	1.97
11850823--11850886	24	2.6	25	78	12	69	18	10	23	46	1.80
11852295--11852334	21	1.9	21	94	0	71	7	20	15	57	1.61
11853370--11853423	23	2.5	22	87	6	74	59	7	1	31	1.36
11853373--11853443	3	23.3	3	74	8	63	61	5	1	30	1.27
11853910--11853947	11	3.2	12	88	11	60	47	0	52	0	1.00
11854421--11854445	8	3.1	8	100	0	50	24	12	52	12	1.72
11854950--11855245	44	6.8	44	71	12	112	28	22	18	30	1.97
11855313--11855609	44	6.8	45	71	10	161	27	23	18	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11855313--11855473	88	1.8	88	82	5	209	29	23	16	30	1.96
11855445--11855653	46	4.7	46	72	10	164	26	22	20	30	1.98
11854916--11855608	232	3.1	219	84	8	880	27	22	18	31	1.97
11855401--11855657	131	2.0	131	86	3	365	26	22	20	30	1.98
11856874--11856902	11	2.6	11	100	0	58	0	6	0	93	0.36
11865980--11866019	21	1.9	21	94	0	71	7	20	15	57	1.61
11866529--11866689	79	2.1	77	95	2	286	40	7	9	41	1.66
11867785--11867809	8	3.1	8	100	0	50	24	12	52	12	1.72
11868420--11868451	5	6.4	5	100	0	64	40	0	0	59	0.97
11869865--11869986	26	4.5	26	71	10	102	32	17	25	24	1.96
11869840--11870010	81	2.1	80	91	1	270	32	17	22	28	1.96
11872983--11873352	126	3.0	123	84	5	472	30	13	21	33	1.93
11873001--11873352	124	2.8	125	86	4	485	29	14	21	34	1.93
11875734--11875953	118	1.9	116	92	1	368	41	9	9	39	1.70
11875959--11876602	23	27.3	23	74	17	451	27	0	24	47	1.56
11875986--11876110	50	2.6	48	82	8	141	28	1	24	44	1.63
11875962--11876295	118	2.8	118	87	4	444	28	1	23	47	1.59
11876055--11876602	139	3.9	134	81	12	522	27	0	24	47	1.54
11876080--11876502	185	2.3	185	93	2	726	27	0	23	48	1.54
11876450--11876559	57	1.9	58	92	1	186	23	0	28	48	1.51
11876529--11876614	23	3.4	27	80	19	107	27	0	22	50	1.50
11876620--11876705	43	2.0	45	90	4	140	48	12	0	38	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11877126--11877160	18	1.9	18	88	0	52	34	8	28	28	1.87
11877813--11877837	7	3.6	7	100	0	50	60	12	0	28	1.32
11878513--11878537	7	3.6	7	100	0	50	60	12	0	28	1.32
11879680--11879785	51	2.1	51	91	3	169	46	0	24	28	1.59
11879766--11879805	20	2.0	20	100	0	80	30	0	35	35	1.58
11879767--11879820	20	2.5	20	88	8	72	35	0	33	31	1.58
11879803--11879837	10	3.2	11	88	12	54	45	0	37	17	1.48
11880661--11880876	108	2.0	108	93	0	369	33	13	19	32	1.91
11881991--11882057	28	2.2	29	73	17	66	37	1	5	55	1.34
11883295--11883375	31	2.6	33	74	16	82	28	4	17	49	1.67
11884660--11884684	12	2.1	12	100	0	50	36	56	0	8	1.29
11885716--11885750	3	11.7	3	100	0	70	31	0	0	68	0.90
11885751--11886006	72	3.6	72	99	0	503	27	6	24	42	1.78
11890225--11890253	3	9.7	3	100	0	58	31	0	0	68	0.89
11890254--11890437	72	2.6	72	99	0	359	27	6	23	41	1.79
11894093--11894329	90	2.6	90	96	0	429	37	13	26	21	1.91
11897709--11897749	12	3.3	13	76	10	50	56	2	0	41	1.13
11907600--11907729	50	2.6	50	88	0	188	33	20	21	24	1.97
11907574--11907734	25	6.4	25	70	16	109	32	21	21	24	1.98
11909050--11909143	49	1.9	49	89	4	145	23	25	7	43	1.79
11910970--11911010	19	2.2	18	86	4	55	34	17	0	48	1.47
11917663--11917790	69	1.9	68	88	4	195	25	17	17	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11919975--11920008	5	6.8	5	100	0	68	38	20	0	41	1.53
11944440--11944468	12	2.3	13	94	5	51	65	6	6	20	1.40
11955518--11955571	27	2.0	27	89	3	83	31	3	0	64	1.11
11956191--11956236	16	2.8	17	83	9	60	73	0	0	26	0.83
11956510--11956540	15	2.1	15	100	0	62	54	0	0	45	0.99
11958204--11958233	3	10.0	3	100	0	60	66	0	33	0	0.92
11968203--11968235	14	2.3	15	89	5	50	27	15	33	24	1.95
11969769--11970083	43	7.2	44	65	12	162	24	23	27	25	2.00
11969678--11970138	88	5.2	88	91	0	706	24	23	26	25	2.00
11970139--11970467	44	7.4	44	74	1	298	33	16	22	27	1.95
11969716--11970262	176	3.1	176	86	1	542	26	22	25	26	2.00
11969716--11970262	264	2.1	264	83	1	675	26	22	25	26	2.00
11970146--11970395	133	1.9	134	87	0	367	31	15	23	29	1.95
11970139--11970440	89	3.4	89	86	0	372	33	16	21	28	1.95
11970141--11970455	133	2.4	133	80	2	337	33	15	22	28	1.95
11970787--11971070	44	6.5	44	71	12	210	27	22	23	26	1.99
11970783--11971013	84	2.7	87	76	13	235	28	23	22	25	1.99
11988155--11988221	26	2.5	26	75	17	66	56	2	0	40	1.14
11994964--11995123	41	3.9	42	85	5	186	26	24	20	28	1.99
11996376--11996411	18	2.0	18	94	0	63	36	11	25	27	1.90
11999551--11999626	39	1.9	39	94	0	134	21	19	19	39	1.93
11999915--11999972	29	2.0	29	93	0	98	10	27	13	48	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12001786--12002012	42	5.5	42	90	3	320	25	23	20	29	1.99
12010614--12010659	16	3.1	15	76	11	51	34	2	4	58	1.30
12011411--12011474	26	2.3	28	89	7	96	50	10	10	28	1.71
12013456--12013847	51	7.7	51	78	8	345	24	16	27	31	1.97
12013456--12013845	152	2.6	152	86	2	523	24	16	27	31	1.97
12015405--12015438	17	1.9	18	88	5	52	26	2	0	70	1.01
12024799--12025029	79	2.9	78	85	5	286	31	16	12	40	1.84
12024957--12025348	84	4.6	84	84	6	427	32	9	11	45	1.73
12024957--12025408	84	5.3	85	81	7	377	32	9	11	45	1.74
12025385--12025496	59	1.9	59	81	7	138	28	8	10	52	1.64
12027893--12027937	20	2.2	20	92	0	72	31	11	26	31	1.91
12029741--12029787	23	2.0	23	83	0	58	36	8	2	53	1.44
12030446--12030508	19	3.3	19	68	0	63	41	9	3	46	1.52
12030543--12030578	18	1.9	18	88	5	54	50	0	16	33	1.46
12030877--12030903	7	3.9	7	100	0	54	29	0	0	70	0.88
12031907--12031963	27	2.1	27	96	0	105	15	28	24	31	1.96
12032013--12032076	27	2.4	27	86	0	83	50	1	10	37	1.47
12034701--12034764	20	3.0	20	71	28	53	42	14	0	43	1.45
12034798--12034855	24	2.4	24	82	8	73	39	13	0	46	1.44
12044629--12044675	14	3.4	14	79	2	51	55	0	10	34	1.35
12045911--12045946	18	2.0	18	89	10	56	44	0	25	30	1.54
12049583--12049631	24	2.0	24	88	0	71	36	18	24	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12049680--12049745	26	2.5	26	80	7	71	39	18	21	21	1.93
12059327--12059445	49	2.4	49	84	5	143	28	32	15	22	1.95
12060312--12060377	13	4.6	13	69	20	51	50	4	7	37	1.52
12060309--12060403	45	2.3	42	89	10	142	48	5	6	40	1.51
12060703--12060803	50	2.0	50	84	7	132	56	4	5	32	1.45
12060754--12060778	13	1.9	13	100	0	50	60	0	0	40	0.97
12067506--12067649	48	3.0	48	92	0	243	22	11	23	41	1.87
12073336--12073500	55	3.0	55	90	0	267	50	15	7	26	1.71
12076023--12076092	11	6.2	11	77	11	61	22	22	0	54	1.45
12076031--12076085	23	2.4	24	79	8	62	20	23	0	56	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187