genome.fa.s15.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  38  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11099799--11099843	9	5.1	9	84	15	67	55	2	0	42	1.12
11100711--11100806	45	2.2	44	86	5	131	31	3	29	36	1.73
11100967--11101101	26	5.1	29	64	30	72	51	3	0	44	1.24
11100967--11101171	102	2.0	102	96	0	374	51	3	0	43	1.26
11100967--11101255	102	2.8	102	86	8	331	51	4	1	42	1.29
11101212--11101259	15	3.1	15	88	11	78	56	6	0	37	1.25
11106808--11106900	18	5.2	18	90	0	150	27	24	16	31	1.96
11117653--11117690	18	2.1	19	90	5	60	50	2	0	47	1.15
11118135--11118216	27	3.0	27	78	3	76	23	20	31	24	1.98
11122224--11122261	18	2.1	19	90	5	60	50	2	0	47	1.15
11122706--11122787	27	3.0	27	78	3	76	23	20	31	24	1.98
11124098--11124132	16	2.3	15	95	5	61	57	5	2	34	1.37
11124249--11124370	60	2.0	60	88	3	183	54	13	0	31	1.45
11124358--11124444	21	4.2	21	92	7	151	57	13	0	28	1.37
11124363--11124445	40	2.1	40	100	0	166	55	14	0	30	1.40
11125378--11125415	19	2.0	19	100	0	76	42	0	21	36	1.53
11129910--11130028	60	2.0	60	88	3	177	53	12	0	32	1.44
11130024--11130361	19	17.3	19	71	21	175	55	14	0	30	1.42
11130039--11130154	23	5.0	23	80	15	150	54	16	0	29	1.42
11130025--11130257	42	5.5	42	75	13	219	54	14	0	30	1.41
11130080--11130156	27	3.0	27	87	9	117	54	15	0	29	1.42
11130133--11130358	101	2.2	101	93	0	389	56	13	0	29	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11130374--11130439	27	2.4	27	87	5	89	16	25	24	33	1.96
11130502--11130542	20	2.0	20	90	9	66	53	0	0	46	1.00
11130505--11130550	20	2.3	19	82	10	56	50	2	0	47	1.13
11132731--11132814	18	4.7	18	96	0	150	34	15	11	38	1.84
11135455--11135516	13	4.8	13	80	7	81	37	22	6	33	1.80
11137319--11137381	30	2.1	29	85	2	81	44	7	1	46	1.42
11141881--11141921	21	2.0	21	90	0	64	19	29	21	29	1.98
11146438--11146488	24	2.1	24	85	0	66	54	3	3	37	1.37
11154175--11154238	31	2.1	31	100	0	128	31	3	31	34	1.73
11162944--11162988	18	2.5	18	85	0	54	24	2	4	68	1.19
11162991--11163039	19	2.5	20	77	9	57	38	0	2	59	1.09
11167689--11167749	27	2.3	27	82	0	68	21	4	32	40	1.74
11175880--11175924	18	2.5	19	82	7	58	31	26	4	37	1.76
11191833--11191908	26	2.8	26	76	7	73	28	19	21	30	1.97
11194184--11194239	28	2.0	29	92	3	96	26	1	1	69	1.08
11202531--11202630	42	2.4	42	94	0	173	20	28	15	37	1.92
11204528--11204561	17	1.9	18	88	5	52	35	23	0	41	1.55
11204905--11204943	14	2.7	15	88	7	55	5	17	0	76	0.96
11204963--11204995	16	2.1	16	94	0	57	3	15	6	75	1.11
11205356--11205406	3	17.7	3	92	8	88	64	0	0	35	0.94
11205356--11205406	26	2.0	26	92	7	86	64	0	0	35	0.94
11210714--11210754	20	2.0	21	90	4	66	60	0	4	34	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11211536--11211585	22	2.3	22	79	6	57	64	0	6	30	1.18
11213559--11213765	43	4.9	43	86	1	265	26	15	26	30	1.96
11215544--11215750	43	4.9	43	86	1	265	26	15	26	30	1.96
11224116--11224200	38	2.3	38	82	10	95	31	20	1	47	1.58
11224488--11224521	17	1.9	18	88	5	52	35	23	0	41	1.55
11224865--11224903	14	2.7	15	88	7	55	5	17	0	76	0.96
11225863--11226130	133	2.0	134	97	0	511	33	29	16	20	1.95
11236916--11236978	31	2.0	31	100	0	126	25	38	9	26	1.87
11237781--11237810	15	2.0	15	100	0	60	33	6	46	13	1.69
11250693--11250740	21	2.3	21	85	7	62	64	2	2	31	1.16
11250703--11250771	33	2.1	33	91	0	111	60	0	4	34	1.16
11250734--11250877	21	7.1	19	71	13	83	60	1	5	32	1.28
11250730--11250808	20	4.0	20	79	14	74	68	0	3	27	1.07
11251398--11251507	49	2.2	49	80	10	118	30	8	2	59	1.41
11254804--11254839	12	3.1	11	92	4	54	69	2	2	25	1.15
11254963--11255000	16	2.4	16	95	0	67	42	31	0	26	1.56
11261613--11261666	28	1.9	28	85	7	74	25	12	20	40	1.88
11262596--11262663	29	2.3	29	80	7	75	41	20	16	22	1.90
11266784--11266815	16	2.0	16	100	0	64	31	18	31	18	1.95
11272074--11272107	17	2.1	16	88	5	50	76	14	0	8	1.01
11272771--11272802	11	2.9	11	95	0	55	75	6	9	9	1.20
11277407--11277462	3	18.7	3	96	0	103	0	30	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11279335--11279375	18	2.1	20	86	13	59	58	7	4	29	1.46
11281022--11281053	15	2.1	15	94	0	55	68	9	6	15	1.36
11285773--11285925	43	3.6	43	74	11	131	21	17	30	30	1.96
11286086--11286117	16	1.9	17	93	6	57	40	0	21	37	1.54
11289559--11289593	15	2.4	15	90	4	54	48	0	8	42	1.33
11291562--11291761	50	4.0	50	77	4	188	29	26	17	26	1.98
11293218--11293292	23	3.3	23	86	3	116	32	26	21	20	1.97
11298342--11298529	50	3.7	50	76	1	160	30	26	16	26	1.97
11299822--11299897	23	3.3	23	83	5	100	28	25	22	23	1.99
11299998--11300185	50	3.7	50	76	1	160	30	26	16	26	1.97
11310675--11310719	24	1.9	23	86	13	65	37	0	2	60	1.09
11310816--11310843	9	3.1	9	100	0	56	57	10	0	32	1.33
11310819--11310955	50	2.5	56	79	19	180	46	8	4	40	1.53
11310828--11310943	50	2.3	50	97	2	216	45	6	5	42	1.53
11310966--11311007	16	2.6	16	92	0	66	42	7	2	47	1.43
11310981--11311042	22	2.8	22	85	0	79	46	1	1	50	1.20
11311295--11311323	2	14.5	2	100	0	58	0	48	0	51	1.00
11313554--11313580	14	1.9	14	100	0	54	22	7	18	51	1.70
11314457--11314482	11	2.4	11	100	0	52	57	11	7	23	1.59
11315619--11315706	43	2.0	43	86	0	122	40	12	14	31	1.84
11315976--11316008	7	4.7	7	100	0	66	12	12	0	75	1.04
11316678--11316710	4	8.2	4	100	0	66	48	24	0	27	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11318261--11318324	28	2.4	27	80	12	80	48	15	17	18	1.81
11328624--11328691	30	2.3	30	77	15	77	64	1	0	33	1.02
11328630--11328686	30	2.0	30	86	6	82	66	1	0	31	1.02
11330262--11330395	70	1.9	70	93	0	232	45	4	8	41	1.56
11330702--11330779	6	13.0	6	85	5	68	16	29	7	46	1.75
11330740--11330779	6	6.7	6	97	0	71	17	20	12	50	1.78
11334667--11334706	17	2.4	17	88	12	64	70	0	2	27	1.01
11344042--11344121	37	2.1	38	88	2	117	23	20	22	33	1.97
11347728--11347771	11	3.9	11	79	5	52	59	4	0	36	1.18
11350496--11350539	23	2.0	22	90	4	70	56	2	6	34	1.38
11350636--11350711	36	2.1	36	80	11	84	51	1	9	38	1.42
11351227--11351306	22	3.6	22	88	5	90	38	17	6	37	1.75
11351264--11351339	19	3.8	19	89	5	107	35	15	10	38	1.82
11355564--11355605	19	2.2	19	83	8	50	30	0	2	66	1.04
11364328--11364583	72	3.6	72	98	0	485	42	23	6	26	1.78
11364584--11364627	3	14.7	3	90	9	72	68	2	0	29	1.02
11368846--11369029	72	2.6	72	99	0	359	41	23	6	27	1.79
11369030--11369073	3	14.7	3	100	0	88	68	0	0	31	0.90
11378544--11378584	21	2.0	21	90	0	64	56	4	0	39	1.21
11379437--11379554	60	2.0	58	83	8	148	37	9	21	32	1.85
11379462--11379582	60	2.1	57	80	7	127	38	10	19	32	1.86
11385120--11385665	114	4.8	114	93	0	887	25	19	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11385566--11385793	72	3.2	72	88	1	332	27	17	27	26	1.98
11385946--11385993	14	3.4	14	97	0	87	27	0	39	33	1.57
11385946--11385993	7	6.9	7	80	0	60	27	0	39	33	1.57
11386393--11386758	101	3.5	100	83	10	398	46	11	15	26	1.80
11386719--11387208	149	3.4	145	87	8	684	35	15	16	31	1.91
11386774--11387704	135	6.6	135	86	9	1237	38	16	15	29	1.90
11387332--11387704	148	2.5	148	92	3	590	39	17	15	27	1.90
11389018--11389047	15	2.0	15	93	0	51	46	0	10	43	1.37
11391273--11391305	12	2.8	12	86	4	50	27	0	9	63	1.24
11391555--11391661	43	2.5	43	85	0	142	20	17	28	33	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187