genome.fa.s15.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  165  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50025930--50025969	14	2.9	14	84	0	53	42	17	7	32	1.77
50025895--50025961	34	1.9	35	87	3	100	44	13	10	31	1.77
50033052--50033393	64	5.2	64	63	20	170	32	16	12	38	1.86
50032978--50033454	131	3.6	131	84	0	605	32	16	12	37	1.87
50035963--50035992	3	10.0	3	100	0	60	66	0	0	33	0.92
50040242--50040304	30	2.1	30	82	8	76	38	1	3	57	1.24
50040251--50040308	30	2.0	29	90	10	91	34	1	1	62	1.16
50054681--50054759	31	2.6	31	85	2	88	36	8	11	43	1.72
50054701--50054759	31	1.9	31	96	0	109	35	11	10	42	1.76
50055853--50055903	20	2.4	21	83	6	59	5	25	3	64	1.33
50058433--50058472	17	2.4	17	95	0	71	42	17	5	35	1.71
50063171--50063202	5	6.6	5	92	7	57	18	0	0	81	0.70
50067699--50067748	20	2.4	22	83	12	70	64	0	2	34	1.05
50067771--50067835	19	3.4	18	72	14	58	61	1	3	33	1.21
50067781--50067893	10	11.4	10	67	16	56	62	0	6	30	1.19
50067780--50067892	29	3.8	29	78	13	115	61	0	6	31	1.20
50067790--50067907	60	2.0	61	86	5	168	61	0	7	30	1.23
50068102--50068158	28	2.0	28	86	6	80	33	3	3	59	1.31
50069706--50069746	20	2.0	20	100	0	82	46	4	14	34	1.66
50081761--50081814	28	2.0	28	85	3	74	50	1	11	37	1.49
50084498--50084600	54	1.9	54	87	0	152	19	32	19	29	1.96
50088632--50088668	9	4.1	9	100	0	74	45	10	10	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50093535--50093560	8	3.2	8	100	0	52	26	11	0	61	1.30
50097361--50097481	60	2.0	60	82	3	145	23	29	22	23	1.99
50097354--50097588	64	3.7	63	75	10	183	28	30	18	22	1.98
50109244--50109329	43	2.0	42	88	2	127	30	20	22	26	1.98
50113883--50114240	177	2.0	177	100	0	716	40	7	20	30	1.81
50114359--50114383	13	1.9	13	100	0	50	32	4	8	56	1.47
50114482--50114780	50	5.8	50	87	2	373	26	22	29	21	1.99
50121656--50121690	6	5.8	6	96	0	61	48	0	14	37	1.44
50128965--50128997	16	2.1	16	100	0	66	36	6	36	21	1.78
50129098--50129226	55	2.3	56	74	16	124	54	3	0	41	1.19
50133286--50133337	24	2.2	24	86	6	70	30	5	7	55	1.52
50134947--50134995	24	2.0	24	92	0	80	34	2	8	55	1.41
50135466--50135505	20	2.0	20	90	0	62	27	10	12	50	1.72
50135451--50135517	34	1.9	35	90	3	109	32	7	11	47	1.68
50141446--50141601	69	2.3	69	95	2	278	39	11	22	26	1.88
50144978--50145015	18	2.0	20	90	10	62	36	15	26	21	1.93
50149140--50149229	11	8.6	11	69	17	50	36	2	3	57	1.27
50149212--50149250	20	2.0	20	89	0	60	35	2	2	58	1.25
50149741--50149875	40	3.4	39	78	6	139	36	21	20	21	1.95
50149914--50150030	41	2.9	40	82	7	128	24	21	22	31	1.98
50151006--50151076	32	2.2	32	85	7	90	23	4	38	33	1.75
50150962--50151224	110	2.3	111	82	7	300	29	2	24	42	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50155055--50155098	23	2.0	22	86	4	61	31	0	13	54	1.39
50155098--50155165	26	2.6	27	85	2	77	38	4	10	47	1.58
50155117--50155169	26	2.0	26	96	0	97	39	5	7	47	1.56
50155273--50155474	42	4.7	43	86	2	282	26	18	29	25	1.98
50155273--50155474	85	2.4	85	87	1	289	26	18	29	25	1.98
50163992--50164076	40	2.2	40	82	2	100	64	9	2	23	1.35
50166317--50166449	21	6.3	21	73	0	113	42	16	24	16	1.88
50166300--50166402	42	2.5	42	86	0	134	40	17	26	15	1.89
50166280--50166449	63	2.7	63	82	0	180	42	16	24	17	1.88
50173218--50173254	19	1.9	19	89	10	58	54	10	0	35	1.36
50173881--50173972	42	2.2	43	96	2	168	40	0	13	46	1.42
50174041--50174086	21	2.1	21	88	4	65	63	10	0	26	1.27
50185472--50185534	27	2.3	27	83	5	74	68	9	19	3	1.31
50185480--50185541	27	2.4	25	79	12	72	66	12	17	3	1.38
50187001--50187065	31	2.1	31	91	0	103	21	12	38	27	1.89
50190098--50190134	9	4.1	9	92	0	65	45	13	10	29	1.77
50190353--50190413	30	2.0	31	87	3	88	19	37	0	42	1.52
50196148--50196178	15	2.1	14	94	5	53	61	19	3	16	1.48
50196247--50196313	33	2.0	33	97	0	125	56	17	7	17	1.63
50200598--50200885	51	5.7	51	79	7	275	29	25	15	29	1.96
50200598--50200889	102	2.9	102	89	0	406	29	25	16	29	1.96
50200602--50200885	153	1.9	151	82	6	358	29	26	15	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50225580--50225617	20	2.0	20	89	5	60	31	13	7	47	1.71
50227602--50227662	28	2.1	29	85	8	81	45	0	13	40	1.43
50227626--50227744	33	3.6	32	78	12	123	42	0	15	42	1.46
50227619--50227744	66	1.9	66	87	4	175	44	0	14	41	1.45
50227786--50228297	117	4.2	126	80	7	570	37	17	15	29	1.91
50235021--50236082	530	2.0	530	99	0	2115	23	23	30	23	1.99
50240772--50240886	41	2.8	41	83	7	153	22	17	28	31	1.97
50245771--50246082	43	7.3	43	89	2	423	18	16	32	32	1.94
50245771--50246082	85	3.7	86	88	2	423	18	16	32	32	1.94
50245771--50246103	128	2.6	128	84	3	438	20	17	30	31	1.95
50256459--50256518	32	1.9	31	83	10	77	51	3	0	45	1.17
50256491--50256527	16	2.2	18	85	9	51	48	0	2	48	1.15
50256875--50256912	19	2.0	19	85	10	51	50	0	13	36	1.42
50257503--50257594	22	4.2	22	88	0	112	30	27	0	42	1.56
50257544--50257646	52	2.0	51	83	9	129	33	32	0	34	1.58
50257596--50257637	22	1.9	22	90	0	66	33	33	0	33	1.58
50257679--50257741	28	2.2	30	85	8	94	38	0	1	60	1.07
50257814--50257889	23	3.2	23	80	12	84	44	0	0	55	0.99
50257830--50257872	22	1.9	23	90	4	70	44	0	0	55	0.99
50257814--50257886	30	2.5	29	82	6	85	42	0	0	57	0.98
50264478--50264720	125	1.9	125	89	3	373	31	24	14	29	1.94
50264481--50264757	125	2.2	125	84	4	364	33	24	13	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50269603--50269663	29	2.1	28	85	8	79	26	14	16	42	1.87
50276490--50276528	18	2.2	17	86	13	53	33	0	20	46	1.51
50276754--50276851	23	4.3	23	90	2	162	20	21	26	31	1.98
50276756--50276844	45	2.0	45	95	0	160	19	22	26	31	1.97
50283863--50283901	18	2.2	17	86	13	53	33	0	20	46	1.51
50284127--50284224	23	4.3	23	89	2	153	21	21	25	31	1.98
50284129--50284217	45	2.0	45	93	0	151	20	22	25	31	1.98
50290184--50290279	47	2.0	47	97	0	183	43	5	4	46	1.45
50290511--50290535	1	25.0	1	100	0	50	100	0	0	0	0.00
50291679--50291757	11	7.6	11	68	18	62	53	2	1	43	1.22
50291677--50291780	31	3.4	30	78	7	120	53	4	0	40	1.28
50298387--50298453	31	2.2	31	97	0	125	49	14	13	22	1.79
50314202--50314589	102	3.9	102	82	7	395	28	17	26	28	1.97
50314202--50314587	51	7.7	50	76	12	305	27	17	26	28	1.97
50323916--50323964	25	1.9	25	84	12	64	30	16	10	42	1.81
50329076--50329136	12	5.2	11	76	9	50	44	0	1	54	1.10
50329082--50329126	13	3.7	13	82	14	60	48	0	0	51	1.00
50329070--50329142	24	3.0	24	80	9	69	43	1	1	53	1.17
50329273--50329316	19	2.2	20	88	4	63	59	0	0	40	0.98
50329382--50329436	19	3.0	19	81	5	51	50	0	3	45	1.19
50329438--50329499	5	12.4	5	79	19	51	77	4	16	1	1.02
50330681--50331558	449	2.0	449	95	1	1573	34	10	20	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50331561--50332003	222	2.0	222	99	0	868	31	6	19	43	1.75
50335828--50335856	5	5.8	5	100	0	58	17	0	20	62	1.33
50338129--50338153	12	2.1	12	100	0	50	28	0	8	64	1.22
50338694--50338718	13	1.9	13	100	0	50	48	0	8	44	1.32
50338772--50338871	9	11.6	9	73	12	50	48	16	1	35	1.53
50338770--50338871	43	2.4	43	94	0	186	48	15	0	35	1.52
50342972--50343006	11	3.2	11	87	0	52	28	5	0	65	1.15
50343888--50343929	22	1.9	22	100	0	84	57	9	11	21	1.63
50353671--50353702	6	5.3	6	100	0	64	34	0	50	15	1.45
50354856--50354904	24	2.0	24	96	0	89	53	8	2	36	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187