genome.fa.s15.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  17  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4607469--4607537	20	3.3	20	72	21	61	24	1	4	69	1.15
4615175--4615209	8	4.2	8	85	7	52	45	2	0	51	1.16
4616388--4617064	114	5.9	114	87	3	905	25	22	23	29	1.99
4616388--4617052	231	2.9	228	87	3	924	25	22	23	28	1.99
4617627--4617701	14	5.1	14	75	10	60	28	1	32	38	1.65
4617682--4617751	14	4.9	14	76	1	59	22	0	41	35	1.54
4617824--4617860	7	5.3	7	93	0	65	16	0	56	27	1.40
4617820--4617860	14	2.9	14	92	0	73	19	0	51	29	1.47
4617743--4617975	109	2.1	108	84	5	301	24	0	32	42	1.59
4617841--4618104	90	3.0	89	89	2	395	28	0	27	43	1.60
4618529--4618694	84	2.0	84	85	2	226	29	16	21	31	1.96
4620214--4620242	12	2.4	12	100	0	58	48	10	0	41	1.37
4620238--4620537	9	34.8	9	67	19	149	46	19	2	32	1.62
4620238--4620388	25	6.2	25	68	16	95	46	19	2	31	1.64
4620264--4620532	34	7.9	34	70	17	173	47	18	2	31	1.61
4620304--4620533	41	5.8	41	73	14	121	46	18	2	32	1.63
4620362--4620533	16	10.1	16	69	19	116	47	19	1	31	1.59
4620399--4620548	25	5.9	25	75	13	130	47	20	2	30	1.61
4620729--4620792	25	2.5	26	89	2	103	43	15	1	39	1.56
4622477--4622702	43	5.3	43	84	3	276	29	18	27	24	1.98
4625687--4625736	26	1.9	26	87	0	73	54	4	6	36	1.44
4625687--4625736	13	3.8	13	78	0	55	54	4	6	36	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4634030--4634063	17	1.9	18	88	5	52	55	20	2	20	1.56
4636094--4636195	44	2.4	42	82	8	118	28	19	21	30	1.98
4636240--4636346	42	2.5	44	83	8	130	28	24	19	27	1.99
4635925--4636574	223	2.9	225	81	3	645	29	20	18	31	1.96
4636368--4636753	184	2.1	179	87	3	540	30	19	16	32	1.95
4636368--4636669	92	3.3	91	70	9	270	31	19	16	32	1.94
4636139--4636976	407	2.1	402	87	1	1192	29	20	16	32	1.95
4636684--4636796	44	2.6	43	82	6	131	29	19	20	30	1.97
4636546--4637250	223	3.2	223	87	1	1000	30	20	17	32	1.95
4638473--4638599	45	2.7	45	82	4	155	13	24	21	40	1.89
4639561--4639613	11	4.8	11	77	9	54	7	20	0	71	1.10
4644381--4644414	17	1.9	18	88	5	52	55	20	2	20	1.56
4644890--4644929	21	1.9	21	84	0	53	62	2	2	32	1.22
4646756--4646806	10	4.3	12	78	16	54	5	15	1	76	1.07
4654593--4654622	15	1.9	16	93	6	53	73	0	3	23	0.98
4660655--4660711	28	2.0	28	100	0	114	24	17	24	33	1.96
4666120--4666207	27	3.3	27	81	9	108	18	19	18	44	1.87
4672130--4672173	22	2.0	23	86	4	63	43	13	6	36	1.71
4675104--4675264	72	2.2	72	85	3	218	28	19	22	29	1.98
4675158--4675374	114	1.9	114	88	0	328	26	17	26	28	1.98
4675278--4675437	73	2.2	73	87	0	230	27	19	25	28	1.99
4675102--4675888	187	4.2	187	85	4	963	28	19	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4675465--4675636	73	2.4	73	87	0	245	29	18	26	26	1.98
4675535--4675756	114	1.9	114	91	1	365	27	19	27	25	1.99
4675673--4675840	84	2.0	84	89	0	255	28	21	24	25	1.99
4676193--4676254	21	2.9	21	78	2	70	19	0	37	43	1.51
4676266--4676307	21	2.0	20	95	4	75	11	0	35	52	1.38
4676572--4676644	21	3.5	20	83	9	83	26	0	39	34	1.56
4678823--4678855	17	1.9	17	100	0	66	30	6	6	57	1.47
4678814--4678970	64	2.5	64	100	0	314	32	5	9	52	1.58
4678887--4678919	17	1.9	17	100	0	66	30	6	6	57	1.47
4679690--4679936	43	5.8	43	75	8	119	23	17	32	26	1.97
4679717--4679949	43	5.5	44	77	5	176	24	18	30	27	1.98
4687868--4687915	16	3.1	15	80	16	53	77	0	4	18	0.93
4690739--4690835	41	2.4	41	89	0	140	31	21	18	27	1.97
4690995--4691058	30	2.1	30	97	0	119	45	20	3	31	1.67
4691077--4691263	65	3.0	61	72	14	148	40	16	7	36	1.76
4699218--4699314	41	2.4	41	89	0	140	34	21	16	27	1.95
4706480--4706510	15	2.1	15	93	0	53	41	12	6	38	1.69
4706519--4706582	27	2.4	27	81	0	74	23	23	14	39	1.91
4706749--4706859	26	4.2	26	79	6	91	32	23	14	29	1.94
4706749--4706991	53	4.6	53	76	5	206	32	22	13	32	1.92
4712619--4712673	27	2.0	27	89	0	83	30	18	16	34	1.93
4722416--4722456	21	2.0	21	100	0	82	46	19	4	29	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4726815--4726876	24	2.7	22	74	13	63	67	1	6	24	1.23
4729789--4729930	43	3.3	43	86	1	187	30	23	18	27	1.97
4731463--4731521	30	2.0	30	86	0	82	55	6	13	23	1.62
4734405--4734920	257	2.0	257	99	0	1014	25	25	14	34	1.94
4736171--4736204	6	5.5	6	86	6	50	41	0	0	58	0.98
4736167--4736204	18	2.1	19	95	5	69	42	0	0	57	0.98
4736168--4736205	7	5.9	7	87	12	55	42	0	0	57	0.98
4739684--4739758	30	2.5	30	80	2	89	29	18	12	40	1.87
4743110--4743190	43	1.9	43	89	2	128	53	2	22	22	1.58
4747992--4748074	6	14.5	6	70	12	50	74	7	2	15	1.14
4747994--4748028	16	2.3	15	90	5	52	77	5	0	17	0.96
4747992--4748074	24	3.7	22	75	9	78	74	7	2	15	1.14
4748039--4748076	17	2.3	17	86	4	51	76	5	2	15	1.08
4755920--4756063	72	2.0	72	94	0	252	31	15	12	40	1.84
4756110--4756172	26	2.4	26	97	2	117	15	28	3	52	1.58
4762290--4762336	25	2.0	24	84	12	62	40	0	21	38	1.53
4762320--4762368	20	2.5	20	83	6	64	48	2	24	24	1.61
4763090--4763137	18	2.7	20	72	21	52	50	2	0	47	1.12
4763298--4763337	21	2.0	20	85	5	53	37	40	10	12	1.77
4763298--4763348	20	2.5	21	83	3	59	39	33	9	17	1.83
4763391--4763495	35	3.1	35	77	10	110	19	3	34	42	1.69
4771797--4771829	15	2.2	15	94	0	57	51	0	6	42	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4772596--4772661	16	4.4	16	67	27	54	54	0	25	19	1.44
4773838--4773933	49	2.0	48	91	2	156	43	5	26	25	1.75
4779198--4779261	15	3.9	16	77	18	69	43	1	7	46	1.42
4780024--4780109	43	2.0	43	93	0	145	48	2	24	24	1.62
4782191--4782229	20	2.0	20	94	0	69	43	15	12	28	1.83
4784202--4784256	23	2.3	23	84	3	74	30	12	29	27	1.93
4784246--4784297	24	2.2	24	85	0	68	26	21	25	26	1.99
4787239--4787271	14	2.2	16	89	10	52	30	3	0	66	1.06
4789609--4789652	21	2.1	21	83	8	54	11	0	34	54	1.36
4789871--4790287	126	3.3	126	89	1	622	33	18	20	27	1.96
4793289--4793499	116	1.8	116	84	0	287	45	4	7	42	1.51
4793678--4793718	21	2.0	21	85	0	55	4	21	41	31	1.74
4793975--4794017	18	2.4	18	88	0	59	44	9	27	18	1.80
4794629--4794653	7	3.6	7	100	0	50	56	16	0	28	1.41
4794649--4794674	7	3.7	7	100	0	52	57	15	0	26	1.38
4794629--4794674	14	3.3	14	88	11	60	56	15	0	28	1.39
4795880--4795916	11	3.4	11	84	0	56	43	0	35	21	1.53
4795882--4795938	22	2.5	24	83	13	77	45	0	31	22	1.53
4796949--4797025	30	2.6	30	91	0	118	29	1	12	55	1.45
4797159--4797192	12	2.8	12	90	0	50	67	0	0	32	0.91
4801312--4801369	29	2.0	29	86	10	82	10	39	12	37	1.77
4802713--4803008	50	5.9	50	80	5	332	24	17	27	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4802717--4803000	101	2.8	101	91	2	457	24	17	27	30	1.98
4810404--4810442	20	1.9	20	89	5	60	64	7	0	28	1.21
4810410--4810466	22	2.7	21	81	10	55	59	3	0	36	1.14
4810672--4810696	13	1.9	13	100	0	50	32	0	0	68	0.90
4811333--4811370	21	1.9	20	84	10	51	31	2	5	60	1.33
4811343--4811397	29	1.9	30	85	14	80	32	0	7	60	1.24
4814280--4814468	95	2.0	95	97	0	360	31	36	7	24	1.84
4816468--4816499	10	3.1	11	82	17	50	68	9	0	21	1.17
4817980--4818020	18	2.3	18	86	0	55	41	12	0	46	1.41
4819175--4819856	158	4.4	152	90	4	930	54	8	8	28	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187