genome.fa.s15.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  44  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12945525--12945568	21	2.0	22	91	4	72	31	27	11	29	1.91
12946394--12946487	31	3.0	31	96	3	179	31	9	15	42	1.80
12946791--12946817	4	6.8	4	100	0	54	22	0	0	77	0.76
12951313--12951408	31	3.1	31	95	3	174	31	9	13	45	1.75
12951712--12951746	4	9.0	4	93	6	63	25	0	0	74	0.82
12952975--12953008	17	2.0	17	88	0	50	20	2	20	55	1.56
12963200--12963249	26	1.9	26	95	0	91	56	2	8	34	1.40
12973672--12973711	16	2.4	17	87	8	64	72	12	0	15	1.12
12974989--12975131	25	5.7	25	82	0	124	36	18	12	32	1.89
12974989--12975107	50	2.4	50	85	2	159	34	18	13	33	1.90
12975020--12975131	50	2.2	50	83	0	143	37	18	11	32	1.87
12977610--12977752	39	3.8	37	78	5	133	33	13	18	34	1.90
12977679--12978095	36	11.4	37	83	3	497	29	15	21	34	1.94
12977679--12978095	73	5.7	74	83	3	488	29	15	21	34	1.94
12977688--12978095	109	3.7	109	88	1	584	29	15	21	33	1.94
12980926--12981025	34	2.9	34	73	11	87	21	19	24	36	1.95
12980983--12981148	75	2.2	75	86	2	226	24	18	20	36	1.95
12980980--12981109	35	3.6	35	68	17	93	24	17	20	36	1.94
12981003--12981188	75	2.5	75	78	4	178	25	18	19	35	1.95
12982293--12982340	25	1.9	25	95	0	87	20	29	37	12	1.90
12985442--12985525	41	2.0	41	88	4	125	22	19	15	42	1.88
12987032--12987104	30	2.2	35	83	13	93	65	13	10	9	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12996466--12996518	5	9.8	5	82	10	52	71	1	24	1	1.06
12996473--12996518	16	2.8	16	83	9	58	71	2	26	0	0.97
12996471--12996518	11	4.5	10	87	10	60	70	2	27	0	0.98
13002433--13002569	67	2.0	67	100	0	274	22	17	29	30	1.97
13004431--13004472	22	1.9	22	85	9	59	33	26	0	40	1.56
13009108--13009149	20	2.1	20	90	0	66	30	16	11	40	1.85
13023194--13023278	37	2.3	37	80	8	102	24	25	7	42	1.80
13025946--13025990	22	2.0	22	100	0	90	60	17	4	17	1.53
13027936--13027984	24	2.0	24	100	0	98	40	16	22	20	1.91
13030757--13030801	21	2.1	22	84	12	58	66	8	11	13	1.44
13031817--13031847	5	6.2	5	100	0	62	19	0	0	80	0.71
13032087--13032141	9	6.1	9	79	12	51	21	30	0	47	1.51
13037014--13037057	22	1.9	24	86	9	65	40	13	4	40	1.65
13037912--13037944	17	1.9	17	88	11	50	30	21	0	48	1.50
13040234--13040277	21	2.1	21	83	8	54	2	31	0	65	1.05
13045769--13045794	13	2.0	13	100	0	52	53	0	0	46	1.00
13055056--13055110	15	3.7	15	74	16	51	74	3	20	1	1.06
13057042--13057187	72	2.0	72	93	1	249	24	25	15	34	1.95
13066232--13066274	21	2.2	20	83	8	52	20	34	0	44	1.52
13069088--13069124	2	18.5	2	88	0	56	0	43	2	54	1.14
13069085--13069126	10	4.4	10	79	11	52	0	40	2	57	1.12
13069573--13069601	14	2.1	14	100	0	58	13	27	13	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13076796--13076842	11	4.5	11	89	5	71	74	2	10	12	1.16
13076796--13076842	21	2.2	21	88	7	69	74	2	10	12	1.16
13081836--13081873	10	3.6	10	92	7	58	68	0	2	28	1.03
13081835--13081896	20	3.1	19	75	13	52	66	0	3	30	1.08
13081886--13081918	16	2.0	17	88	5	50	66	0	0	33	0.92
13082946--13083006	10	5.8	10	76	7	59	72	1	26	0	0.94
13082944--13083029	20	4.4	20	75	5	79	65	1	33	0	1.01
13083376--13084294	156	5.9	156	85	7	1175	51	7	9	31	1.62
13083376--13084294	467	2.0	459	89	4	1407	51	7	9	31	1.62
13089479--13089525	23	2.0	23	84	8	60	59	14	2	23	1.46
13089622--13089654	7	4.7	7	100	0	66	45	39	0	15	1.46
13093147--13093181	15	2.4	14	86	9	52	40	5	20	34	1.76
13093907--13093967	32	1.9	32	83	6	79	31	16	14	37	1.89
13093904--13094033	34	3.9	34	76	9	108	39	16	11	33	1.84
13093958--13094033	36	2.2	34	88	4	107	40	17	7	34	1.78
13101070--13101097	5	5.6	5	100	0	56	82	17	0	0	0.68
13103375--13103438	29	2.2	29	88	0	101	28	18	20	32	1.96
13106644--13106844	92	2.1	95	81	6	232	37	16	13	32	1.88
13112835--13112913	37	2.1	37	90	0	122	24	8	30	36	1.86
13118998--13119042	23	2.0	23	100	0	90	33	26	22	17	1.96
13136796--13136839	7	6.7	7	87	10	58	75	6	0	18	1.02
13136796--13136833	18	2.1	19	90	5	60	76	5	0	18	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13137161--13137263	44	2.3	44	80	5	109	25	25	25	24	2.00
13137342--13137655	157	2.0	156	89	0	484	26	27	18	27	1.98
13137608--13137895	129	2.2	129	91	0	459	29	26	16	27	1.97
13137735--13138506	218	3.5	217	95	0	1339	28	27	18	26	1.98
13137502--13138375	44	20.0	44	71	9	456	28	27	17	27	1.98
13139741--13139796	7	8.0	7	83	16	64	16	16	0	67	1.23
13139741--13139788	14	3.5	14	82	5	71	14	16	0	68	1.21
13140618--13140667	20	2.5	20	77	3	57	12	8	4	76	1.15
13145001--13145041	13	2.9	15	89	10	61	56	0	2	41	1.13
13146461--13146504	7	6.7	7	87	10	58	75	6	0	18	1.02
13146461--13146498	18	2.1	19	90	5	60	76	5	0	18	0.97
13148416--13148471	24	2.3	24	81	9	69	35	5	14	44	1.68
13148926--13148992	27	2.5	28	87	7	102	29	29	23	16	1.96
13149034--13149183	4	36.0	4	76	16	112	70	0	29	0	0.93
13149033--13149211	52	3.5	51	73	20	133	68	0	30	0	0.94
13149038--13149190	22	7.2	22	72	20	114	69	0	30	0	0.94
13149046--13149200	38	3.8	43	75	17	154	68	0	30	0	0.95
13149035--13149209	82	2.1	86	84	9	227	69	0	29	0	0.93
13155610--13155639	12	2.5	12	94	0	51	60	20	0	20	1.37
13155622--13155732	26	3.4	35	68	25	91	52	12	0	34	1.46
13155888--13155928	3	13.7	3	100	0	82	68	31	0	0	0.90
13155927--13155970	3	14.3	3	90	4	70	63	4	0	31	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13156016--13156054	20	2.0	21	85	10	55	66	10	0	23	1.22
13156208--13156292	27	3.1	27	87	0	125	15	30	28	25	1.96
13156347--13156417	25	2.7	26	82	8	90	49	0	7	43	1.29
13161881--13161940	30	2.0	30	96	0	111	20	13	11	55	1.69
13161931--13161967	2	19.0	2	94	5	67	48	0	0	51	1.00
13163968--13164018	23	2.4	22	78	18	54	37	0	5	56	1.23
13171856--13172153	50	5.9	50	84	4	339	26	20	28	23	1.99
13189259--13189340	10	8.7	9	71	17	51	32	2	0	64	1.07
13189297--13189323	13	2.1	13	100	0	54	29	0	0	70	0.88
13189490--13189523	17	2.0	17	88	0	50	17	0	8	73	1.08
13192438--13192497	16	3.7	15	75	18	57	30	0	1	68	0.99
13192433--13192497	34	1.9	33	84	9	87	30	0	1	67	1.00
13197958--13198002	17	2.8	17	87	12	60	48	0	8	42	1.34
13199452--13199523	34	2.1	34	97	0	135	27	8	11	52	1.65
13201123--13201200	3	27.3	3	74	10	74	71	0	0	28	0.86
13201123--13201191	26	2.7	25	86	10	95	72	0	0	27	0.85
13204176--13204236	30	2.1	28	82	11	70	47	0	0	52	1.00
13207940--13207984	21	2.1	21	91	0	72	31	22	28	17	1.97
13237709--13237735	13	2.1	13	100	0	54	48	14	7	29	1.71
13252292--13252321	6	5.0	6	100	0	60	83	0	0	16	0.65
13252395--13252427	14	2.3	15	89	5	50	75	0	6	18	1.00
13252388--13252436	17	3.1	16	80	17	57	73	2	6	18	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13253242--13253289	23	2.1	23	92	3	80	52	8	0	39	1.32
13257930--13257992	25	2.6	25	80	10	76	31	7	3	57	1.43
13258239--13258273	11	3.0	12	91	8	63	40	0	0	60	0.97
13258248--13258290	14	3.1	15	87	9	56	30	0	6	62	1.21
13258234--13258287	26	2.1	25	86	3	72	33	1	3	61	1.25
13260013--13260047	16	2.2	16	89	0	52	17	17	22	42	1.88
13260509--13260555	19	2.5	19	86	6	60	25	17	8	48	1.74
13262551--13262620	34	2.1	34	100	0	140	28	11	2	57	1.48
13266546--13267028	50	9.7	50	76	2	380	32	21	18	26	1.97
13266524--13267007	100	4.8	100	81	3	519	33	21	18	26	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187