genome.fa.s15.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  140  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42197746--42197930	101	1.8	101	90	3	300	31	28	16	22	1.96
42199059--42199190	66	2.0	66	98	0	255	33	22	11	32	1.90
42202028--42202066	6	6.5	6	100	0	78	33	51	0	15	1.44
42207558--42207914	27	13.3	27	84	3	371	45	18	17	18	1.86
42207577--42207915	81	4.2	81	85	1	412	45	17	18	19	1.86
42208089--42208165	27	2.9	26	78	3	91	15	24	23	36	1.94
42208283--42208352	30	2.4	30	88	4	99	25	21	24	28	1.99
42212339--42212433	45	2.1	45	86	1	129	33	26	5	34	1.79
42212414--42212465	16	3.2	16	91	0	77	36	34	0	28	1.58
42221128--42221158	16	2.0	15	93	6	53	32	0	29	38	1.57
42223619--42223743	46	2.7	46	87	1	171	16	22	15	45	1.85
42224810--42224908	49	2.0	49	98	0	189	37	12	5	45	1.63
42230775--42231045	40	6.8	40	79	5	189	25	28	21	24	1.99
42230790--42231045	80	3.2	78	80	7	250	25	28	21	24	1.99
42231359--42231430	29	2.5	29	86	4	92	27	31	13	26	1.94
42231412--42231514	43	2.4	43	100	0	206	26	35	15	22	1.94
42234298--42234367	27	2.6	27	95	2	113	31	28	12	27	1.93
42234298--42234395	28	3.5	28	90	2	135	31	28	13	26	1.94
42241301--42241330	15	1.9	16	93	6	53	40	26	0	33	1.57
42241496--42241604	42	2.6	41	79	4	128	27	22	16	33	1.95
42246640--42246695	11	5.5	11	71	16	57	37	10	19	32	1.86
42246639--42246695	20	2.8	20	97	0	105	36	10	19	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42246745--42246893	26	5.8	26	91	1	228	26	22	22	28	1.99
42246745--42246893	52	2.9	52	93	1	255	26	22	22	28	1.99
42262067--42262110	22	2.0	23	82	8	56	2	20	20	56	1.52
42263298--42263354	9	5.8	10	76	15	57	36	8	19	35	1.83
42263297--42263371	20	3.8	20	91	6	111	37	9	18	34	1.83
42263316--42263371	11	5.5	11	71	16	57	37	10	19	32	1.86
42263421--42263568	26	5.8	26	88	3	219	25	22	22	29	1.99
42263421--42263568	51	2.9	52	91	2	237	25	22	22	29	1.99
42279684--42279741	30	1.9	31	86	10	84	36	13	22	27	1.92
42280281--42280367	44	2.0	44	86	4	122	35	13	26	24	1.93
42280504--42280724	47	4.6	47	76	11	212	36	14	24	24	1.93
42280598--42280912	54	6.0	54	76	11	267	36	16	24	22	1.94
42280551--42280889	101	3.3	101	85	4	403	35	16	24	23	1.94
42280708--42280901	55	3.6	54	84	4	239	35	18	24	21	1.95
42292224--42292344	46	2.6	46	80	2	125	23	31	18	27	1.97
42294879--42295085	53	3.8	53	78	3	216	37	17	24	21	1.94
42308762--42308831	25	2.8	24	91	4	104	24	27	24	24	2.00
42308761--42308844	25	3.4	24	83	8	98	27	23	23	25	2.00
42308979--42309070	41	2.2	42	94	1	159	31	15	20	32	1.94
42309092--42309206	31	3.8	31	95	2	198	29	17	25	27	1.97
42313302--42313595	147	2.0	147	99	0	579	29	10	22	37	1.88
42317419--42317523	53	2.0	53	81	7	124	38	16	24	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42320595--42320626	14	2.4	13	90	10	55	62	12	6	18	1.50
42320864--42320895	14	2.4	13	90	10	55	62	12	6	18	1.50
42320486--42321023	269	2.0	268	98	0	1040	41	15	13	30	1.84
42323012--42323050	17	2.3	17	100	0	78	61	12	5	20	1.50
42325638--42325733	48	2.0	48	97	0	183	29	28	6	36	1.81
42336170--42336200	16	1.9	16	93	0	53	35	22	0	41	1.54
42336167--42336206	20	2.0	20	85	0	53	37	22	0	40	1.54
42336439--42336635	108	1.8	110	88	2	308	23	26	15	34	1.95
42336392--42336646	55	4.8	53	80	6	250	21	25	16	36	1.94
42358389--42358650	39	6.7	40	87	7	337	25	22	27	24	2.00
42369427--42369556	41	3.2	40	83	6	170	34	26	14	24	1.94
42369427--42369569	40	3.5	40	82	5	160	34	25	14	24	1.94
42374471--42374525	26	2.1	26	86	6	76	52	5	1	40	1.35
42378399--42378537	61	2.3	61	80	0	152	28	28	19	23	1.98
42379540--42379574	14	2.4	14	90	4	52	48	0	0	51	1.00
42381908--42381991	28	3.0	28	98	0	159	27	14	26	32	1.95
42394639--42394670	6	5.3	6	96	0	55	15	28	0	56	1.40
42399334--42399782	225	2.0	224	93	0	772	26	20	19	33	1.97
42400224--42400273	23	2.2	23	85	7	66	34	28	12	26	1.92
42414356--42414445	29	3.1	29	80	4	94	28	28	13	28	1.94
42414536--42414560	9	2.8	9	100	0	50	20	36	12	32	1.89
42414678--42414760	8	10.4	8	75	5	60	12	21	18	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42414678--42414729	24	2.2	24	89	0	77	13	25	13	48	1.79
42414678--42414760	32	2.6	32	84	0	103	12	21	18	48	1.80
42414717--42414761	24	1.9	23	90	4	72	8	17	24	48	1.75
42417818--42417851	17	1.9	17	88	5	50	50	8	5	35	1.58
42418828--42418942	29	4.0	29	79	2	108	29	27	14	27	1.95
42420292--42420323	16	2.0	16	100	0	64	12	6	31	50	1.65
42429344--42429526	61	3.0	61	98	0	357	34	21	10	32	1.88
42436968--42436997	9	3.2	9	95	4	51	13	0	23	63	1.29
42442189--42442372	40	4.6	41	81	12	208	25	22	27	25	2.00
42442189--42442372	79	2.3	81	82	11	222	25	22	27	25	2.00
42442241--42442405	79	2.1	79	82	8	194	26	21	27	24	1.99
42446365--42446582	109	2.0	109	92	1	366	26	25	22	24	2.00
42450184--42450327	39	3.6	41	81	13	160	25	22	27	24	2.00
42450264--42450346	40	2.1	39	82	6	96	24	24	30	21	1.99
42454647--42454745	51	1.9	51	97	0	189	42	6	21	30	1.77
42455418--42456297	28	31.5	28	99	0	1694	25	14	28	31	1.94
42456479--42456900	212	2.0	211	91	0	682	30	9	25	35	1.87
42461257--42461397	70	2.0	70	92	0	237	29	12	13	45	1.79
42461351--42461429	40	2.0	40	97	0	149	30	10	15	44	1.79
42463246--42463287	18	2.4	17	88	11	59	76	2	16	4	1.07
42465533--42465780	70	3.4	70	93	3	397	28	12	11	47	1.76
42465745--42465813	33	2.1	33	97	0	129	28	11	7	52	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42465808--42465892	40	2.1	40	91	0	134	30	9	11	48	1.71
42465628--42465892	110	2.4	109	74	18	328	28	11	11	48	1.74
42465975--42466030	11	5.7	9	89	10	67	19	0	21	58	1.39
42465988--42466030	11	4.1	11	94	5	72	18	0	18	62	1.32
42478403--42478441	18	2.2	18	90	9	62	71	2	20	5	1.17
42482382--42482445	33	1.9	34	87	9	96	12	29	6	51	1.64
42483564--42483588	10	2.5	10	100	0	50	32	0	8	60	1.26
42492806--42492909	39	2.7	38	83	4	127	44	15	8	31	1.77
42496886--42497089	92	2.2	91	86	3	275	30	17	19	32	1.95
42498575--42498616	16	2.6	16	92	0	66	28	30	11	28	1.92
42500153--42500244	44	2.1	44	97	0	175	28	10	14	46	1.78
42501543--42501584	22	1.9	22	95	0	75	57	4	11	26	1.54
42501548--42501595	22	2.2	22	88	7	71	56	4	12	27	1.54
42508226--42508251	10	2.6	10	100	0	52	76	0	7	15	0.99
42509429--42509535	39	2.7	39	82	2	126	66	0	18	14	1.31
42509489--42509564	33	2.3	33	80	13	86	59	5	22	13	1.54
42517948--42517991	12	3.5	13	84	9	56	25	4	6	63	1.38
42524044--42524086	12	3.8	11	82	14	52	9	23	2	65	1.34
42525132--42525165	15	2.5	13	86	13	50	8	8	5	76	1.15
42525148--42525181	11	3.0	11	91	4	50	17	8	2	70	1.25
42526483--42526525	22	2.0	21	86	4	59	55	9	0	34	1.32
42526514--42526560	19	2.5	20	83	16	64	46	12	6	34	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42527123--42527292	91	1.9	92	79	1	198	35	20	13	30	1.91
42529393--42529432	19	2.2	19	86	13	57	10	27	2	60	1.42
42529569--42529612	6	7.3	6	82	10	54	15	18	0	65	1.27
42529545--42529633	24	4.0	22	75	20	78	11	20	0	68	1.19
42531129--42531224	50	2.0	49	86	10	135	58	9	4	28	1.48
42531129--42531223	47	2.0	46	85	10	120	58	9	4	27	1.48
42551332--42551892	116	4.9	114	82	4	612	27	21	24	25	1.99
42551334--42551887	230	2.4	230	81	5	663	27	22	24	25	2.00
42552117--42552255	38	3.5	43	83	14	142	20	2	38	38	1.64
42552149--42552214	17	3.6	17	71	15	60	22	1	37	37	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187