genome.fa.s15.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  175  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53551360--53551429	19	3.8	18	73	5	68	47	17	0	35	1.48
53551485--53551682	9	21.4	9	82	7	209	44	22	1	31	1.60
53553414--53553543	8	16.1	8	65	12	52	58	4	1	35	1.28
53553481--53553550	33	2.2	32	84	2	86	62	2	0	34	1.10
53555063--53555361	44	6.9	44	74	11	231	28	24	19	28	1.98
53555420--53555576	50	3.1	50	64	7	129	28	22	18	30	1.97
53555368--53555857	100	4.9	100	90	0	694	27	22	20	29	1.98
53555451--53555812	50	7.2	50	66	5	192	26	21	21	30	1.98
53555615--53555884	50	5.4	51	66	11	155	25	25	20	29	1.99
53555957--53556071	50	2.3	50	80	0	131	28	24	21	25	1.99
53557231--53557286	3	18.7	3	100	0	112	0	32	0	67	0.91
53558238--53558302	25	2.6	25	82	7	69	56	7	15	20	1.63
53564223--53564294	31	2.3	32	86	9	96	61	2	0	36	1.11
53567065--53567300	129	1.8	129	86	3	341	26	17	23	31	1.97
53567064--53567304	86	2.8	86	82	1	304	26	18	24	31	1.98
53567064--53567304	43	5.6	43	83	2	270	26	18	24	31	1.98
53570999--53571050	24	2.2	24	92	0	86	34	1	7	55	1.39
53571383--53571433	15	3.5	15	74	15	52	64	5	0	29	1.17
53571639--53571746	11	10.4	11	72	21	65	60	0	3	36	1.15
53571649--53571682	17	2.0	17	94	0	59	61	0	0	38	0.96
53571621--53571756	40	3.3	40	84	3	182	62	0	2	33	1.15
53576771--53576801	14	2.1	15	94	5	55	6	12	3	77	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53577504--53577558	20	2.5	24	77	22	66	30	5	5	58	1.44
53580016--53580183	56	3.0	56	99	0	327	19	33	17	29	1.95
53582698--53582760	9	6.8	9	82	7	81	23	41	1	33	1.64
53582698--53582760	19	3.4	19	86	2	92	23	41	1	33	1.64
53587679--53587766	44	2.0	44	95	0	158	14	23	17	44	1.86
53587863--53587892	11	2.6	12	94	5	53	60	0	0	40	0.97
53589933--53590097	80	2.1	80	87	3	235	40	9	12	36	1.76
53591018--53591046	15	1.9	15	100	0	58	41	10	6	41	1.66
53591773--53592086	43	7.3	43	82	5	327	30	19	23	26	1.98
53591790--53592086	85	3.5	83	81	5	310	31	19	23	25	1.98
53592523--53592586	21	3.0	21	93	0	110	9	46	12	31	1.73
53598060--53598344	9	33.4	9	73	13	185	28	2	19	49	1.63
53598049--53598231	25	7.2	25	85	4	217	29	1	21	47	1.60
53598096--53598176	41	2.0	41	87	0	117	29	2	19	48	1.62
53598049--53598329	16	16.7	17	73	12	158	28	2	19	49	1.61
53598289--53598337	24	2.0	24	88	0	71	32	2	16	48	1.57
53598397--53598463	17	4.2	17	79	14	88	50	8	5	34	1.58
53598448--53598509	21	3.0	21	70	23	51	48	4	4	41	1.46
53598571--53598682	45	2.6	43	86	2	152	50	7	4	37	1.50
53598631--53598663	15	2.2	15	100	0	66	54	6	0	39	1.25
53600184--53600250	23	2.9	24	78	14	77	40	1	38	19	1.61
53600998--53601085	29	3.0	30	72	20	78	38	31	2	27	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53601056--53601094	21	1.9	21	94	5	71	41	35	2	20	1.66
53601189--53601256	21	3.2	21	67	17	50	45	41	2	10	1.53
53601634--53602274	115	5.6	116	79	6	625	27	21	18	32	1.97
53601621--53602275	230	2.9	223	80	6	735	27	21	18	31	1.97
53604921--53605034	42	2.7	42	84	5	140	22	19	28	29	1.98
53604926--53605061	42	3.2	42	81	5	103	25	18	25	30	1.98
53605855--53606272	22	19.0	22	81	0	494	29	11	18	40	1.86
53605860--53606272	110	3.7	110	92	0	637	29	11	18	40	1.86
53606699--53606764	29	2.3	29	78	17	75	39	6	21	33	1.78
53615858--53615883	12	2.2	12	100	0	52	7	15	30	46	1.74
53615951--53616119	73	2.3	72	85	4	223	26	23	23	26	2.00
53616906--53616938	14	2.3	15	94	5	59	30	0	33	36	1.58
53616961--53617027	14	4.9	14	78	7	66	23	0	41	34	1.55
53616973--53617026	26	2.1	26	85	0	72	24	0	44	31	1.54
53616972--53617010	19	2.0	20	90	10	62	20	0	48	30	1.50
53617288--53617366	21	3.7	21	78	8	88	24	1	41	32	1.63
53617304--53617358	7	7.7	7	75	4	56	21	0	45	32	1.52
53617675--53617728	19	2.8	18	78	10	54	70	5	3	20	1.23
53617713--53617811	47	2.1	48	96	1	182	46	7	0	46	1.30
53618131--53618170	16	2.7	15	88	7	55	20	35	0	45	1.51
53622547--53622712	43	3.9	43	92	0	260	23	17	26	32	1.97
53622979--53623017	16	2.4	16	91	4	60	25	0	15	58	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53624166--53624206	21	2.0	21	85	0	55	26	9	7	56	1.58
53624547--53624584	20	1.9	20	88	0	58	42	0	10	47	1.38
53628592--53628636	22	2.0	22	100	0	90	33	13	17	35	1.89
53640745--53640798	23	2.6	20	83	13	65	27	25	0	46	1.53
53641847--53641877	10	3.0	10	90	9	53	38	0	3	58	1.15
53642326--53642382	19	3.1	19	87	7	73	66	1	0	31	1.02
53642340--53642384	3	14.7	3	86	4	63	66	0	0	33	0.92
53669611--53669647	19	1.9	19	88	0	56	40	18	8	32	1.80
53673091--53673147	29	1.9	30	86	10	82	28	15	21	35	1.94
53674577--53674650	37	2.0	37	100	0	148	54	18	8	18	1.68
53674579--53674640	21	3.2	21	62	29	55	53	22	8	16	1.69
53679887--53679934	15	3.4	14	77	13	53	27	0	0	72	0.84
53680628--53680671	21	2.1	21	91	4	72	52	0	2	45	1.13
53684580--53684621	17	2.5	17	80	7	50	54	4	0	40	1.21
53687345--53687374	15	2.0	15	100	0	60	26	20	40	13	1.89
53692052--53692091	20	2.0	20	95	0	71	25	2	25	47	1.64
53694466--53694649	79	2.3	81	81	11	213	25	27	22	25	2.00
53694466--53694649	40	4.6	41	81	12	190	25	27	22	25	2.00
53700136--53700199	28	2.3	30	82	12	75	37	4	0	57	1.19
53700171--53700218	19	2.5	20	86	6	71	35	2	2	60	1.20
53701085--53701167	42	2.0	42	100	0	166	46	21	2	28	1.64
53709526--53709732	62	3.4	62	84	2	249	31	8	16	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53709538--53709726	31	6.1	31	82	4	204	32	7	17	42	1.77
53709538--53709726	92	2.0	93	84	3	229	32	7	17	42	1.77
53709850--53709997	43	3.4	43	89	0	224	26	17	25	31	1.97
53716067--53716267	31	6.5	31	85	1	251	29	7	17	45	1.76
53716067--53716255	92	2.0	92	88	3	245	30	7	17	44	1.76
53716391--53716538	43	3.4	43	86	2	199	24	16	26	33	1.96
53717035--53717109	37	2.0	37	97	0	141	41	10	17	30	1.83
53725522--53725583	31	2.0	31	100	0	124	41	16	9	32	1.80
53728989--53729018	16	1.9	16	93	6	53	30	23	6	40	1.80
53751083--53751269	27	6.9	27	95	0	293	39	24	17	19	1.92
53751635--53751699	28	2.3	28	89	0	94	23	18	24	33	1.96
53751654--53751723	28	2.5	28	83	2	79	22	24	20	32	1.97
53751792--53751841	25	2.0	25	88	7	75	24	26	12	38	1.90
53757612--53757673	27	2.3	27	88	5	90	19	19	19	41	1.90
53758160--53758202	8	5.4	8	85	0	50	16	20	16	46	1.84
53764504--53764755	137	1.8	137	84	3	346	19	19	27	32	1.97
53764716--53764810	42	2.3	41	79	1	109	24	24	22	29	1.99
53766912--53767035	36	3.4	36	75	10	103	44	16	7	31	1.75
53767203--53767324	41	3.0	41	90	1	190	22	28	21	27	1.99
53767205--53767339	41	3.3	40	82	11	175	22	28	21	28	1.99
53767207--53767365	82	1.9	81	82	9	198	23	27	21	28	1.99
53767459--53767578	60	2.0	60	98	0	231	39	18	10	31	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53767763--53767889	41	3.1	41	85	8	154	23	25	22	28	1.99
53774754--53774899	41	3.6	41	88	5	208	22	28	21	26	1.99
53775232--53775281	24	2.2	23	82	7	57	46	14	2	38	1.56
53784772--53784813	20	2.2	19	87	8	66	30	14	21	30	1.92
53787341--53787435	25	3.8	24	87	2	118	21	25	23	30	1.99
53788077--53788118	20	2.2	19	83	12	50	59	4	19	16	1.54
53792357--53792412	20	2.8	20	84	10	87	21	28	0	50	1.49
53802001--53802027	10	2.7	10	100	0	54	44	18	0	37	1.50
53817013--53817049	18	2.1	18	100	0	74	37	5	16	40	1.71
53819189--53819336	59	2.6	59	87	5	223	31	8	20	40	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187