genome.fa.s15.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  109  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32099794--32099822	6	4.8	6	100	0	58	86	13	0	0	0.58
32099745--32099839	6	14.5	6	79	11	55	78	5	12	3	1.03
32101009--32101051	21	2.0	21	81	0	50	25	0	6	67	1.15
32115113--32115182	20	3.5	19	77	11	61	44	10	10	35	1.72
32115138--32115182	21	2.2	20	84	7	56	46	11	6	35	1.66
32116762--32116843	41	2.0	41	85	4	112	17	24	35	23	1.95
32120969--32121076	47	2.3	47	88	0	153	20	20	22	37	1.95
32134663--32134706	22	2.0	21	83	12	54	40	0	0	59	0.98
32140377--32140423	22	2.1	23	84	11	62	76	4	19	0	0.95
32140392--32140440	16	2.9	17	84	9	73	81	4	14	0	0.83
32143611--32143666	29	1.9	29	88	0	85	17	17	35	28	1.93
32143682--32143737	29	1.9	29	82	7	69	17	19	33	28	1.95
32148636--32148708	23	3.2	23	81	11	87	24	31	15	28	1.95
32154286--32154357	36	2.0	36	94	0	126	19	20	12	47	1.82
32154675--32154720	16	2.6	17	80	19	51	45	0	32	21	1.52
32155958--32156137	94	1.9	94	83	2	236	21	27	16	34	1.95
32156376--32156768	149	2.6	148	82	2	457	26	29	11	32	1.92
32157872--32157919	21	2.3	21	89	3	71	41	8	10	39	1.69
32157885--32157925	20	2.0	21	85	4	57	48	4	7	39	1.52
32168299--32168360	30	2.1	28	82	8	70	53	1	6	38	1.37
32170280--32170319	18	2.2	18	86	0	53	22	10	62	5	1.46
32175062--32175094	16	2.1	16	94	5	59	30	42	0	27	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32175402--32175472	29	2.4	31	83	4	83	30	14	8	46	1.74
32187234--32187296	28	2.2	28	100	0	126	47	20	19	12	1.81
32189175--32189253	36	2.2	37	81	4	97	55	1	32	10	1.41
32189329--32189427	49	2.1	47	82	3	117	65	5	15	14	1.43
32191021--32191046	10	2.6	10	100	0	52	61	0	0	38	0.96
32196300--32196344	21	2.0	23	83	8	58	31	2	2	64	1.18
32197510--32197565	27	2.1	27	82	0	67	60	5	1	32	1.29
32197595--32197645	19	2.6	21	76	17	56	58	1	0	39	1.09
32197608--32197645	16	2.3	17	86	4	51	60	2	0	36	1.11
32198512--32198567	27	2.1	27	82	0	67	60	5	1	32	1.29
32198597--32198647	19	2.6	21	76	17	56	58	1	0	39	1.09
32198610--32198647	16	2.3	17	86	4	51	60	2	0	36	1.11
32207402--32207484	32	2.6	32	80	3	105	16	22	42	18	1.89
32210320--32210516	49	3.9	49	81	10	186	32	12	11	44	1.77
32210380--32210510	52	2.6	51	90	5	205	32	13	9	43	1.77
32214288--32214330	22	2.0	22	86	4	61	34	0	11	53	1.37
32217832--32217866	3	11.7	3	93	0	61	34	0	34	31	1.58
32219139--32220899	880	2.0	880	98	0	3371	36	13	20	29	1.90
32228741--32228775	18	1.9	18	88	0	52	42	0	0	57	0.99
32228731--32228774	22	2.0	22	82	8	54	43	2	0	54	1.12
32229407--32229505	47	2.1	48	88	1	146	59	4	18	18	1.53
32229407--32229484	23	3.4	23	75	18	81	60	3	16	19	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32234328--32234384	29	2.0	29	82	0	69	28	10	28	33	1.90
32237797--32237842	22	2.1	22	87	0	65	21	2	8	67	1.29
32240874--32240969	35	2.7	35	93	0	156	26	19	17	36	1.94
32241767--32241817	21	2.5	20	76	17	50	41	23	5	29	1.78
32243139--32243200	30	2.0	31	90	3	99	22	20	30	25	1.98
32243305--32243360	26	2.2	26	83	0	67	37	26	19	16	1.92
32243548--32243743	27	7.3	26	76	13	148	20	17	17	44	1.87
32243545--32243743	80	2.5	80	86	4	267	21	17	17	43	1.88
32243548--32243732	54	3.5	53	80	7	196	21	17	17	43	1.88
32247288--32247329	20	2.1	20	95	0	75	42	4	19	33	1.72
32250391--32250492	51	2.0	51	94	0	177	19	26	23	30	1.98
32255392--32255522	39	3.3	40	91	5	205	24	22	28	25	1.99
32256999--32257049	26	2.0	26	88	0	75	43	17	0	39	1.49
32258134--32258176	20	2.2	20	95	0	77	51	4	9	34	1.55
32258827--32258879	20	2.6	20	78	3	61	37	22	26	13	1.91
32260321--32260544	79	2.8	78	84	6	281	25	27	22	24	2.00
32260321--32260544	40	5.7	40	87	6	280	25	27	22	24	2.00
32268198--32268321	40	3.1	40	100	0	248	25	21	20	32	1.98
32273321--32273397	4	19.2	4	91	0	127	54	20	0	24	1.45
32273554--32273587	17	2.0	17	88	11	52	20	29	26	23	1.99
32287226--32287260	19	1.9	18	88	11	54	17	28	0	54	1.43
32297227--32297275	21	2.3	21	82	0	53	26	38	16	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32300870--32300917	21	2.3	21	78	7	53	22	29	20	27	1.99
32306632--32306748	35	3.3	35	81	1	126	42	30	11	14	1.82
32307560--32307774	45	4.8	45	83	1	279	20	18	16	44	1.86
32311525--32311555	9	3.4	9	90	0	53	25	12	22	38	1.90
32311609--32311645	9	4.1	9	92	0	65	45	13	10	29	1.77
32311855--32311914	30	2.0	31	86	3	86	20	40	0	40	1.52
32313330--32313429	50	2.0	50	100	0	200	38	12	16	34	1.85
32319865--32319925	29	2.1	30	84	9	81	45	0	32	21	1.52
32320589--32320647	30	1.9	31	83	16	79	42	8	22	27	1.82
32335390--32335457	16	4.2	16	92	0	118	27	0	36	35	1.58
32335685--32335824	17	8.6	17	65	23	61	52	0	1	45	1.14
32335722--32335770	24	2.1	22	85	14	64	55	0	2	42	1.11
32335741--32335796	15	4.0	15	73	17	57	55	0	0	44	0.99
32335701--32335888	41	4.7	39	67	23	115	52	3	2	42	1.29
32335751--32335813	26	2.5	25	82	10	83	58	1	0	39	1.07
32343869--32343907	20	2.0	20	94	0	69	43	12	33	10	1.77
32348355--32348382	3	9.3	3	100	0	56	67	0	32	0	0.91
32349420--32349479	20	3.2	18	72	11	50	5	26	0	68	1.10
32349399--32349451	25	2.0	27	85	7	74	1	32	0	66	1.03
32349406--32349463	25	2.3	25	81	0	71	3	31	0	65	1.09
32358354--32358398	23	2.0	23	100	0	90	35	40	4	20	1.72
32359544--32359582	12	3.4	11	89	7	51	33	10	0	56	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32364458--32364718	45	5.8	45	80	4	258	27	21	13	38	1.90
32364467--32364713	89	2.8	90	82	3	291	28	21	12	36	1.91
32368997--32369081	41	2.1	41	100	0	170	34	14	22	29	1.93
32370515--32370570	20	2.8	21	73	10	55	64	1	3	30	1.21
32370822--32370868	19	2.5	19	73	10	51	36	4	0	59	1.17
32370823--32370921	10	10.2	10	69	13	55	31	4	0	64	1.12
32370861--32370917	19	2.9	19	75	10	53	29	3	0	66	1.08
32391706--32391846	70	2.0	70	97	0	264	23	26	16	34	1.95
32392942--32393000	21	2.8	21	84	0	73	28	28	8	33	1.87
32394853--32394898	23	2.0	23	100	0	92	43	8	21	26	1.81
32398891--32398972	31	2.7	30	84	5	103	30	9	13	46	1.75
32398893--32398972	29	2.7	29	86	5	97	31	10	13	45	1.77
32398893--32398983	29	3.0	29	82	7	85	30	12	13	43	1.80
32401017--32401114	41	2.4	40	81	8	126	45	7	25	21	1.77
32413251--32413350	41	2.4	41	100	0	200	25	11	30	34	1.90
32420937--32421043	40	2.7	40	82	0	133	30	19	21	28	1.98
32421089--32421279	40	4.8	40	85	1	247	28	23	22	25	1.99
32421337--32421437	40	2.5	40	87	3	132	34	20	21	22	1.97
32420937--32421437	229	2.2	233	84	4	638	31	20	20	26	1.98
32421460--32421513	14	3.8	14	70	4	54	20	0	33	46	1.51
32421652--32421767	14	8.1	14	75	13	85	22	0	29	47	1.57
32421720--32421767	15	3.3	15	88	5	71	18	0	35	45	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32421756--32421818	14	4.4	15	74	9	51	19	0	39	41	1.51
32421652--32421787	7	19.3	7	71	9	71	20	0	30	47	1.55
32422228--32422272	19	2.3	20	92	3	74	75	6	4	13	1.15
32422579--32422607	14	2.1	14	93	6	51	17	24	0	58	1.38
32423173--32423277	53	2.0	54	92	1	176	40	16	13	30	1.86
32426094--32426151	28	2.1	28	100	0	116	31	3	13	51	1.58
32426426--32426513	44	2.0	43	84	6	115	28	14	19	37	1.91
32427028--32427286	130	2.0	130	98	0	500	23	38	14	23	1.91
32431776--32431807	11	2.8	11	95	4	55	53	0	0	46	1.00
32435462--32435487	12	2.2	12	100	0	52	30	30	0	38	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187