genome.fa.s15.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  161  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48824417--48824460	16	2.9	15	83	6	52	79	2	2	15	0.93
48826368--48826465	34	2.9	34	76	8	92	30	25	16	27	1.96
48826706--48826756	21	2.7	19	76	11	52	33	11	15	39	1.84
48830034--48830067	18	1.9	17	88	5	50	35	0	2	61	1.11
48831961--48832025	32	2.1	31	94	2	112	18	3	20	58	1.52
48851709--48851758	20	2.5	19	80	6	55	52	8	2	38	1.43
48853926--48854526	297	2.0	297	87	3	861	35	16	12	35	1.87
48858104--48858147	23	1.9	23	85	0	61	54	11	6	27	1.61
48860414--48860463	8	5.6	8	80	19	55	32	0	0	68	0.90
48860414--48860468	28	1.9	29	96	3	103	36	0	0	63	0.95
48860460--48860536	11	7.4	11	75	20	76	40	3	0	55	1.18
48860416--48860477	28	2.3	27	88	5	99	37	0	0	62	0.95
48860472--48860526	27	2.0	27	89	7	83	41	3	0	54	1.18
48860431--48860529	39	2.6	38	84	12	130	41	2	0	56	1.11
48863371--48863426	25	2.2	25	90	6	87	19	26	10	42	1.84
48868789--48868828	21	1.9	21	85	10	55	37	2	20	40	1.66
48880119--48880178	30	2.0	30	83	3	75	41	0	38	20	1.52
48880392--48880428	9	4.1	9	92	0	65	29	10	13	45	1.77
48880411--48880487	32	2.6	30	71	17	70	42	15	14	27	1.85
48880483--48880513	9	3.4	9	90	0	53	38	22	12	25	1.90
48881835--48881872	18	2.1	18	85	9	51	28	18	18	34	1.95
48882085--48882127	17	2.5	17	85	10	61	34	2	0	62	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48882085--48882129	18	2.7	16	80	12	54	33	4	0	62	1.15
48884126--48884230	50	2.1	49	91	3	167	32	9	10	47	1.70
48896510--48896543	8	4.2	8	85	14	52	55	8	0	35	1.31
48899728--48899807	25	3.2	25	80	7	99	26	27	21	25	1.99
48899728--48899819	25	3.7	25	78	8	89	27	27	20	25	1.99
48908145--48908197	23	2.3	23	100	0	106	24	39	3	32	1.73
48916670--48916724	25	2.2	25	93	0	92	16	29	20	34	1.94
48916765--48916822	25	2.3	25	82	5	73	20	27	22	29	1.99
48928172--48928230	25	2.4	25	88	0	82	16	28	16	37	1.92
48928245--48928316	25	2.8	25	85	8	85	16	26	23	33	1.96
48928096--48928316	103	2.2	103	83	4	286	18	26	20	34	1.95
48928271--48928325	25	2.2	25	87	6	76	21	23	23	30	1.99
48936335--48936380	6	7.2	6	83	13	56	76	0	2	21	0.90
48936340--48936386	20	2.2	22	88	7	71	72	0	6	21	1.07
48936335--48936380	13	3.5	13	82	8	58	76	0	2	21	0.90
48942164--48942467	152	2.0	152	99	0	599	36	13	23	25	1.92
48943734--48943780	22	2.1	22	100	0	94	42	4	8	44	1.54
48945995--48946032	20	1.9	20	88	0	58	39	10	7	42	1.69
48951053--48951086	17	1.9	18	88	5	52	26	2	0	70	1.01
48951059--48951101	19	2.3	19	84	8	52	32	2	0	65	1.06
48954152--48954219	18	3.8	18	77	14	68	2	25	0	72	0.99
48955820--48955923	37	2.8	38	86	2	147	15	20	28	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48957203--48957270	19	3.6	19	87	0	91	29	4	32	33	1.77
48961900--48961937	19	2.0	19	94	0	67	28	26	13	31	1.93
48964635--48964675	22	1.9	21	85	5	55	39	2	0	58	1.11
48965254--48965304	19	2.6	19	70	14	50	47	21	1	29	1.62
48966746--48966791	17	2.8	18	84	15	64	28	41	30	0	1.56
48971828--48971869	15	2.5	17	82	14	52	35	2	4	57	1.33
48979635--48979676	21	2.0	21	100	0	84	28	9	14	47	1.75
48987144--48987185	21	2.0	21	100	0	84	28	9	14	47	1.75
48987669--48987760	41	2.2	41	84	3	114	27	20	25	27	1.99
48991682--48991820	46	3.0	46	90	0	224	29	25	9	35	1.87
48993029--48993076	17	2.9	17	90	3	71	54	18	0	27	1.44
49007281--49007330	18	2.7	18	77	20	50	20	6	2	72	1.16
49007367--49007420	19	2.4	23	74	25	62	25	3	1	68	1.16
49007367--49007421	23	2.5	22	77	22	62	27	3	1	67	1.17
49007739--49007874	43	3.2	42	86	5	168	23	21	22	32	1.98
49007762--49007885	43	2.9	43	91	0	194	24	22	19	33	1.97
49013697--49013901	9	22.6	9	74	13	152	35	0	20	43	1.58
49013648--49013757	43	2.7	38	74	15	103	38	3	16	41	1.66
49013704--49013892	56	3.3	56	83	10	254	35	0	20	43	1.56
49013716--49013909	61	3.3	60	84	9	263	36	0	19	43	1.55
49015702--49015745	22	2.0	22	90	0	70	11	20	25	43	1.85
49015808--49015951	43	3.3	43	76	9	150	30	29	19	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49015958--49016101	71	2.0	72	91	2	236	43	18	9	29	1.80
49017408--49017524	57	2.1	57	98	0	225	53	14	11	19	1.71
49020671--49020828	14	11.2	14	75	8	106	44	31	1	22	1.61
49020671--49020814	7	20.4	7	80	4	92	44	31	1	22	1.61
49020862--49020900	7	5.6	7	81	0	51	43	35	0	20	1.52
49021155--49021284	41	3.2	40	81	3	143	33	31	15	19	1.93
49021316--49021429	41	2.8	39	82	4	120	29	30	18	21	1.97
49021185--49022114	145	6.4	145	99	0	1851	31	27	18	23	1.97
49021461--49021574	41	2.8	39	82	4	120	29	30	18	21	1.97
49021606--49021719	41	2.8	39	82	4	120	29	30	18	21	1.97
49021751--49021864	41	2.8	39	82	4	120	29	30	18	21	1.97
49021896--49022009	41	2.8	39	82	4	120	29	30	18	21	1.97
49021937--49022131	104	1.9	105	82	3	250	32	27	18	21	1.97
49022172--49022282	40	2.8	38	76	10	98	18	22	20	37	1.94
49022521--49022561	20	2.0	20	95	0	73	31	0	43	24	1.54
49022660--49022939	126	2.2	126	80	4	318	31	19	16	33	1.93
49022999--49023076	41	2.0	39	90	7	122	37	3	5	53	1.41
49023270--49023338	15	4.5	15	74	13	59	47	37	1	13	1.51
49023640--49023731	14	6.5	14	74	2	58	45	31	1	21	1.59
49030753--49031593	44	18.6	44	71	13	415	33	17	19	29	1.94
49030752--49031606	89	9.5	89	73	12	428	34	16	19	29	1.94
49030753--49031082	134	2.5	134	81	7	327	35	17	19	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49031171--49031499	133	2.5	130	80	5	340	32	16	18	31	1.94
49031472--49031667	51	4.0	51	71	10	129	37	18	15	28	1.92
49031526--49031698	94	1.8	95	83	3	233	36	17	16	29	1.92
49030762--49031702	454	2.1	449	78	6	968	34	16	19	29	1.94
49033267--49033311	8	6.0	8	82	10	51	26	6	2	64	1.30
49033273--49033316	21	2.2	20	87	4	61	27	4	2	65	1.23
49036347--49036385	6	6.5	6	82	11	53	43	5	0	51	1.24
49036347--49036390	18	2.4	18	85	7	54	40	4	0	54	1.21
49036550--49036718	59	2.8	60	87	0	232	41	4	10	43	1.60
49036557--49036718	60	2.7	59	87	0	225	40	4	10	43	1.60
49040075--49040162	44	2.0	44	84	2	113	48	6	4	39	1.50
49041271--49042192	459	2.0	459	97	0	1736	28	26	17	27	1.97
49050355--49050437	25	3.2	25	66	22	62	53	3	4	38	1.40
49052087--49052157	21	3.3	21	64	21	56	28	4	15	52	1.61
49052065--49052243	44	4.1	44	92	0	286	29	9	11	49	1.70
49060360--49060397	5	7.6	5	100	0	76	60	0	0	39	0.97
49069538--49069577	18	2.2	18	100	0	80	0	50	50	0	1.00
49071176--49071314	45	3.1	44	81	10	156	30	15	20	33	1.94
49075907--49076020	52	2.1	55	80	12	128	34	6	15	43	1.72
49081323--49081376	3	18.7	3	79	7	58	68	3	1	25	1.16
49081324--49081384	31	2.0	31	87	6	88	68	3	1	26	1.14
49082550--49082606	30	1.9	30	92	0	96	47	0	8	43	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49083855--49083910	27	2.1	27	93	0	94	35	14	8	41	1.77
49084002--49084088	41	2.1	41	89	0	129	42	5	8	43	1.58
49087473--49087516	20	2.1	21	88	12	65	59	15	9	15	1.61
49090058--49090093	17	2.1	17	100	0	72	41	0	16	41	1.48
49090988--49091039	15	3.6	15	80	12	56	44	0	1	53	1.11
49091052--49091267	107	2.0	109	97	1	409	43	1	5	49	1.36
49091224--49091265	15	2.7	16	82	14	52	45	0	2	52	1.13
49091215--49091256	15	2.9	15	82	10	52	47	0	0	52	1.00
49095690--49095715	2	13.0	2	100	0	52	50	0	50	0	1.00
49097769--49097799	16	2.0	15	93	6	53	6	16	0	77	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187