genome.fa.s15.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  131  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38953491--38953588	28	3.5	28	74	9	92	29	24	20	25	1.99
38953491--38953626	29	4.8	27	72	14	78	29	23	19	27	1.98
38971939--38972161	26	8.5	26	81	3	259	28	26	10	34	1.89
38972520--38972788	26	10.3	25	81	6	252	28	26	11	34	1.90
38971630--38972736	575	1.9	576	86	2	1591	29	23	12	34	1.92
38972537--38972788	78	3.2	77	83	4	301	28	26	11	34	1.90
38979060--38979099	20	1.9	21	85	10	55	25	2	12	60	1.45
38982224--38982401	27	6.6	27	84	3	205	29	28	15	26	1.96
38982245--38982400	82	1.9	81	88	3	233	29	28	15	26	1.96
38985380--38985731	47	7.4	47	86	2	445	30	9	31	28	1.88
38985436--38985511	22	3.3	22	66	16	64	30	9	30	30	1.88
38985380--38985731	141	2.5	140	91	1	524	30	9	31	28	1.88
38985850--38985928	37	2.1	37	90	0	122	24	18	31	25	1.98
38995403--38995457	22	2.5	22	84	0	83	32	23	29	14	1.94
38995441--38995694	127	2.0	127	89	1	384	35	22	22	20	1.96
38999932--38999972	21	1.9	22	85	5	57	41	0	9	48	1.36
39000686--39000723	20	2.1	19	85	14	53	44	0	10	44	1.38
39004085--39004269	40	4.6	41	80	7	204	24	22	27	24	2.00
39009811--39009846	16	2.2	17	95	5	65	16	19	22	41	1.90
39011378--39011418	21	1.9	22	85	5	57	41	0	9	48	1.36
39014507--39014609	43	2.4	43	86	4	145	33	15	21	29	1.94
39017503--39017605	51	2.0	51	92	0	170	20	32	23	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39022225--39022413	43	4.4	43	87	2	254	33	16	20	29	1.95
39024307--39024491	79	2.3	82	84	7	238	25	27	22	24	2.00
39024288--39024491	40	5.1	40	82	8	238	25	27	22	25	2.00
39032325--39032507	79	2.3	81	83	7	223	24	27	22	24	2.00
39032304--39032507	40	5.1	40	81	8	229	24	27	22	25	2.00
39041387--39041488	34	3.0	34	80	7	100	24	21	27	26	1.99
39045846--39045990	72	2.0	72	98	0	281	32	11	25	31	1.90
39046415--39046510	24	3.8	24	73	15	95	40	14	19	25	1.90
39046411--39046524	52	2.2	52	92	3	185	36	14	21	27	1.92
39046554--39046704	52	3.0	52	80	3	200	31	14	27	27	1.95
39046557--39046736	51	3.5	50	78	5	200	29	14	28	27	1.95
39046735--39047297	280	2.0	280	100	0	1126	34	11	23	30	1.89
39050327--39050380	28	1.9	28	88	0	81	42	5	12	38	1.67
39051954--39052322	27	13.7	27	79	4	323	40	19	8	31	1.82
39055315--39055416	28	3.6	28	87	0	150	21	12	34	31	1.91
39055758--39056085	27	12.3	27	76	7	201	37	22	10	30	1.87
39055758--39056085	53	6.2	53	74	7	152	37	22	10	30	1.87
39055758--39056085	54	6.1	54	77	6	310	37	22	10	30	1.87
39056066--39056127	27	2.3	27	94	0	106	41	11	12	33	1.79
39055773--39056116	81	4.3	81	77	5	225	37	20	9	31	1.86
39056615--39056640	11	2.4	11	100	0	52	26	0	19	53	1.45
39059940--39059983	15	3.0	14	80	9	52	27	0	4	68	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39060864--39060909	23	2.0	24	83	12	60	17	10	2	69	1.27
39060875--39060914	19	2.1	19	95	0	71	15	12	0	72	1.12
39065123--39065166	15	3.0	14	80	9	52	27	0	4	68	1.09
39066046--39066091	23	2.0	24	83	12	60	17	10	2	69	1.27
39066057--39066096	19	2.1	19	95	0	71	15	12	0	72	1.12
39066724--39066824	43	2.4	42	80	11	107	31	26	16	24	1.97
39072445--39072565	39	3.1	39	95	0	206	20	24	31	23	1.98
39075833--39076024	52	3.8	51	81	10	200	29	14	28	28	1.95
39075833--39076024	51	3.8	50	80	6	208	29	14	28	28	1.95
39079825--39079994	40	4.3	40	83	4	200	24	21	29	24	1.99
39079847--39080029	79	2.3	79	80	5	199	25	21	28	24	1.99
39081998--39082132	37	3.6	37	81	3	119	25	27	25	22	2.00
39082027--39082135	37	2.9	37	86	0	137	26	26	23	22	2.00
39089157--39089332	88	2.0	88	98	0	343	32	21	5	40	1.76
39090708--39090754	21	2.2	21	84	0	58	25	36	25	12	1.92
39090991--39091111	64	1.9	64	94	1	217	34	28	15	21	1.94
39108688--39108945	100	2.6	100	98	0	489	20	15	30	32	1.94
39113409--39113451	20	2.2	19	87	4	59	11	16	20	51	1.75
39113457--39113481	13	1.9	13	100	0	50	40	8	8	44	1.63
39117803--39117874	25	2.8	26	83	6	103	27	23	19	29	1.98
39121757--39121996	120	2.0	120	98	0	462	41	22	6	30	1.78
39128189--39128457	30	9.1	30	75	9	153	40	11	24	23	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39128189--39128457	116	2.3	116	82	5	328	40	11	24	23	1.87
39130090--39130403	156	2.0	156	100	0	628	35	8	14	42	1.76
39131173--39131230	20	2.9	20	77	10	64	12	29	20	37	1.89
39132938--39133001	30	2.1	30	91	0	101	20	28	32	18	1.96
39144929--39144957	15	1.9	15	100	0	58	51	27	0	20	1.47
39145092--39145220	65	2.0	65	100	0	258	39	15	12	32	1.85
39147891--39147955	27	2.4	27	89	0	94	38	21	15	24	1.92
39148178--39148258	26	3.1	26	87	0	108	30	19	12	37	1.89
39148366--39148454	28	3.2	28	90	1	135	25	22	22	29	1.99
39149311--39149345	18	1.9	18	88	0	52	48	8	25	17	1.75
39153557--39153581	7	3.6	7	100	0	50	60	0	12	28	1.32
39159350--39159612	40	6.6	40	87	3	300	26	28	20	24	1.99
39167268--39167445	27	6.6	27	84	3	205	29	28	15	26	1.96
39167289--39167444	82	1.9	81	88	3	233	29	28	15	26	1.96
39172851--39172875	11	2.3	11	100	0	50	56	20	8	16	1.65
39175769--39175844	24	3.2	24	81	7	91	27	9	22	40	1.84
39175777--39175866	24	3.8	24	87	0	108	26	7	22	43	1.80
39176082--39176220	63	2.2	64	85	1	190	23	18	18	39	1.92
39176048--39176226	95	1.9	95	84	2	243	22	18	18	40	1.92
39176041--39176239	32	6.3	33	75	7	153	22	17	20	40	1.92
39176231--39176277	22	2.1	22	88	0	67	25	17	10	46	1.79
39179181--39179228	22	2.2	23	82	14	57	56	6	0	37	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39181922--39181954	14	2.3	15	89	5	50	24	3	3	69	1.16
39181921--39181964	12	3.5	12	79	11	52	25	9	2	63	1.35
39181998--39182064	6	11.5	6	87	10	86	13	13	0	73	1.11
39182031--39182094	23	2.6	25	76	18	62	14	9	3	73	1.20
39188546--39189568	341	3.0	341	97	0	1913	38	13	15	32	1.86
39190281--39190327	23	2.0	23	88	8	69	14	14	14	55	1.70
39191559--39191587	7	4.1	7	100	0	58	41	0	0	58	0.98
39192484--39192526	12	3.5	12	81	6	50	27	9	2	60	1.40
39192484--39192516	13	2.6	13	85	4	50	24	6	3	66	1.28
39192561--39192621	6	9.7	6	79	10	68	13	3	6	77	1.09
39203738--39203858	43	2.8	43	80	8	131	29	24	18	27	1.98
39208813--39208996	51	3.6	51	81	5	221	29	28	17	24	1.97
39208808--39208992	101	1.8	101	89	3	291	30	27	17	24	1.97
39208803--39209026	101	2.2	100	78	10	249	29	28	16	26	1.96
39211522--39211776	29	8.8	29	79	10	270	36	13	25	24	1.92
39211522--39211886	29	12.6	29	76	6	193	36	12	26	24	1.91
39211811--39211894	30	2.9	29	85	3	114	36	10	26	26	1.89
39215386--39215429	22	1.9	23	86	9	63	65	13	2	18	1.36
39217141--39217190	27	1.9	25	84	8	64	8	32	2	58	1.39
39218199--39218232	12	2.9	12	91	4	52	14	5	8	70	1.31
39228116--39228224	54	2.0	54	94	0	191	33	12	21	33	1.91
39229093--39229143	20	2.5	20	90	6	77	27	13	17	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39240709--39240747	19	2.1	19	95	0	69	17	35	35	10	1.84
39242993--39243143	40	3.8	40	85	1	169	25	29	21	23	1.99
39252440--39252478	21	1.9	19	85	10	51	23	5	15	56	1.59
39257668--39257791	61	2.0	62	90	4	198	28	13	12	45	1.79
39259603--39259628	7	3.7	7	100	0	52	26	30	0	42	1.56
39259600--39259635	14	2.6	14	86	0	54	25	33	2	38	1.70
39259551--39259683	64	2.1	65	86	1	187	27	24	13	34	1.93
39262144--39262203	29	2.0	31	93	6	106	40	30	3	26	1.72
39263012--39263094	36	2.3	36	83	6	96	40	20	4	33	1.74
39266952--39267062	27	4.1	27	77	10	95	19	13	19	46	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187