genome.fa.s15.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  137  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41087938--41088063	64	2.0	64	95	0	225	30	14	16	38	1.88
41095155--41096124	483	2.0	483	96	0	1769	30	15	22	31	1.95
41104331--41104363	14	2.4	14	94	0	57	45	24	6	24	1.75
41129625--41129718	19	4.8	19	90	5	152	37	10	15	36	1.83
41129625--41129725	40	2.7	38	88	8	152	37	9	16	35	1.82
41129657--41129741	21	4.0	22	79	14	81	37	7	16	38	1.76
41129707--41129751	23	2.0	23	86	4	65	33	4	15	46	1.66
41130358--41130407	25	2.0	26	92	4	84	30	8	4	58	1.45
41130431--41130526	30	3.3	29	69	16	83	25	12	3	59	1.48
41130431--41130540	49	2.1	54	85	13	149	25	12	2	59	1.47
41131122--41131514	98	4.0	98	97	0	723	27	10	24	37	1.88
41132174--41132206	17	1.9	17	93	0	57	42	6	24	27	1.78
41134651--41134693	17	2.4	19	84	7	54	16	9	6	67	1.40
41134672--41134721	21	2.3	21	80	13	57	20	10	10	60	1.57
41137604--41137755	76	2.0	76	93	0	259	24	11	28	34	1.91
41138308--41138530	40	5.6	40	85	3	227	25	21	27	26	1.99
41138383--41138565	79	2.3	80	81	1	217	26	20	27	25	1.99
41151686--41151867	28	6.5	28	91	1	276	28	12	26	32	1.92
41153850--41153874	13	1.9	13	100	0	50	0	12	0	88	0.53
41163212--41163261	7	7.3	7	78	13	50	68	0	0	32	0.90
41163212--41163250	15	2.5	15	87	4	60	69	0	0	30	0.89
41163228--41163334	19	5.7	19	73	19	75	63	2	1	31	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41163266--41163385	47	2.4	50	73	14	115	60	2	1	35	1.20
41163313--41163426	15	7.4	15	66	15	63	58	1	1	37	1.19
41163345--41163382	19	2.0	19	94	0	67	65	0	0	34	0.93
41163265--41163409	78	1.8	79	82	10	190	60	2	1	35	1.20
41168108--41168157	26	1.9	26	95	0	91	38	14	2	46	1.56
41172335--41172388	25	2.2	25	93	0	90	51	12	3	31	1.57
41172344--41172421	25	3.0	26	88	1	113	43	12	2	41	1.56
41172714--41173221	255	2.0	255	99	0	1007	36	13	14	35	1.85
41174340--41174502	81	2.0	81	93	0	281	31	26	14	27	1.95
41174796--41174845	26	1.9	26	88	8	75	38	14	2	46	1.56
41178930--41178960	12	2.6	12	94	0	53	12	25	48	12	1.77
41183752--41183807	26	2.2	26	96	0	103	28	8	26	35	1.87
41186166--41186295	66	2.0	66	83	6	165	26	17	13	42	1.86
41187084--41187354	39	6.9	39	94	2	438	24	26	22	26	2.00
41187588--41187737	74	2.0	74	96	0	273	28	22	14	34	1.93
41195384--41195416	16	2.0	17	88	5	50	39	15	12	33	1.84
41197989--41198046	30	1.9	30	85	0	80	17	24	25	32	1.96
41198074--41198157	35	2.3	36	75	4	89	26	17	30	25	1.97
41204714--41204746	16	2.1	16	88	11	50	60	0	3	36	1.12
41210934--41210969	19	2.0	18	89	10	56	16	38	0	44	1.48
41221065--41221130	20	3.2	20	67	12	60	25	4	10	59	1.50
41221174--41221208	16	2.2	16	100	0	70	28	14	5	51	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41229325--41229367	22	2.0	22	90	9	70	62	2	0	34	1.08
41229809--41229839	16	1.9	16	93	0	53	48	0	0	51	1.00
41230171--41230208	3	12.7	3	100	0	76	34	31	0	34	1.58
41236189--41236242	24	2.2	24	90	0	81	31	20	29	18	1.96
41252505--41252801	50	5.8	50	81	3	292	28	20	28	23	1.99
41266172--41266239	13	5.8	12	73	23	56	7	19	1	72	1.16
41266197--41266262	20	3.4	19	78	12	64	4	18	1	75	1.04
41266153--41266244	22	4.2	20	77	18	78	7	17	2	72	1.17
41270481--41270541	29	2.1	30	90	3	97	31	4	11	52	1.58
41270605--41270651	16	3.0	15	77	20	51	44	2	0	53	1.12
41270603--41270651	10	4.6	11	73	16	50	44	2	0	53	1.12
41270603--41270651	22	2.3	23	83	16	70	44	2	0	53	1.12
41270802--41270831	12	2.5	12	94	0	51	16	43	10	30	1.81
41278127--41278159	16	2.1	16	100	0	66	39	24	6	30	1.79
41288445--41288480	7	5.3	7	96	3	65	38	0	0	61	0.96
41294200--41294236	18	2.0	19	89	5	58	37	0	8	54	1.30
41306115--41306192	21	3.7	21	76	8	77	50	10	6	33	1.62
41306115--41306173	22	2.7	22	81	7	84	52	8	3	35	1.49
41308341--41308379	20	2.0	20	84	0	51	46	12	7	33	1.71
41308825--41308879	27	2.0	27	100	0	110	32	32	14	20	1.92
41309699--41309834	64	2.1	64	95	0	245	44	5	15	35	1.69
41313820--41314366	283	1.9	283	100	0	1094	32	14	11	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41314403--41314444	11	3.3	13	75	18	52	47	0	0	52	1.00
41314389--41314444	25	2.3	25	93	6	98	46	0	0	53	1.00
41319748--41319805	28	2.1	28	83	6	73	43	10	13	32	1.78
41324092--41324375	141	2.0	141	96	0	523	43	13	13	29	1.81
41324384--41324443	28	2.1	28	81	6	68	45	8	13	33	1.73
41331189--41331241	25	2.1	25	93	6	90	30	18	11	39	1.86
41332157--41332199	20	2.2	20	83	8	52	20	2	23	53	1.57
41346588--41346685	38	2.5	40	85	6	130	51	10	2	36	1.48
41364464--41364511	23	2.0	24	92	4	80	29	16	12	41	1.85
41364471--41364517	12	4.0	12	75	5	51	31	14	10	42	1.80
41372002--41372056	27	2.0	27	85	0	74	27	25	3	43	1.71
41372012--41372069	27	2.1	27	93	0	98	24	24	6	44	1.77
41377656--41377716	7	8.6	7	81	3	77	14	0	36	49	1.44
41377646--41377704	14	4.1	14	78	6	55	15	0	35	49	1.45
41377645--41377708	29	2.2	30	88	2	94	14	0	34	51	1.42
41378330--41378373	6	7.3	6	89	0	70	18	0	43	38	1.50
41378330--41378385	18	3.1	18	86	0	76	16	0	41	42	1.48
41378187--41378765	230	2.4	229	85	8	730	33	2	20	43	1.66
41380599--41380641	18	2.4	18	88	0	59	44	9	27	18	1.80
41382472--41382499	11	2.5	11	100	0	56	42	7	28	21	1.79
41382451--41382550	51	2.0	51	90	4	157	46	2	28	24	1.64
41387999--41388063	32	2.1	32	97	2	123	47	12	9	30	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41388497--41388578	41	2.0	41	97	0	155	30	17	20	31	1.95
41389093--41389121	13	2.2	13	100	0	58	58	6	20	13	1.58
41391214--41391632	107	4.0	106	85	4	551	30	17	18	33	1.94
41392544--41392578	16	2.2	16	89	0	52	20	11	22	45	1.82
41402540--41402904	107	3.4	107	88	1	502	29	18	18	33	1.95
41413698--41413769	8	9.1	8	77	17	62	51	8	0	40	1.32
41413662--41413780	39	3.2	37	81	16	131	50	6	1	41	1.39
41413663--41413769	47	2.3	44	80	17	128	50	6	1	41	1.39
41418056--41418212	57	2.8	58	83	5	205	40	17	5	36	1.73
41419682--41419726	18	2.5	19	76	16	51	68	6	2	22	1.24
41420009--41420037	14	2.0	15	93	6	51	68	0	0	31	0.89
41430943--41431029	45	1.9	45	95	0	156	33	25	17	24	1.96
41431033--41431228	51	3.9	51	77	5	218	29	28	17	23	1.97
41431040--41431224	101	1.8	102	90	3	302	30	28	17	23	1.97
41436807--41436836	16	1.9	15	93	6	51	46	6	0	46	1.29
41441863--41441917	27	2.1	26	86	3	74	60	5	3	30	1.37
41452164--41452426	40	6.6	40	88	3	325	24	20	27	26	1.99
41452203--41452461	80	3.3	80	85	3	256	25	20	27	25	1.99
41460115--41460377	40	6.6	40	88	3	325	24	20	27	26	1.99
41460154--41460412	80	3.3	80	85	3	256	25	20	27	25	1.99
41465678--41465726	16	2.9	17	79	14	57	40	2	2	55	1.23
41469764--41469814	9	5.4	10	77	11	54	25	0	1	72	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41469764--41469814	19	2.7	19	81	6	59	25	0	1	72	0.95
41469748--41469805	11	5.5	11	73	8	50	29	0	3	67	1.07
41469764--41469842	28	2.9	27	82	3	77	27	2	3	65	1.22
41477849--41477896	17	2.7	18	74	9	53	72	4	8	14	1.23
41479657--41479721	31	2.1	31	91	0	103	49	0	6	44	1.27
41479657--41479746	31	2.9	31	83	5	92	50	2	4	43	1.34
41480335--41480412	39	2.0	39	97	0	147	41	14	12	32	1.83
41480762--41480794	17	1.9	17	93	0	57	36	6	0	57	1.23
41485088--41485166	40	1.9	41	84	5	106	22	26	26	24	2.00
41485195--41485237	15	2.8	15	80	16	52	20	0	25	53	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187