genome.fa.s15.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  152  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45698969--45699005	9	4.1	9	85	0	56	29	8	13	48	1.71
45701248--45701359	27	4.2	27	80	5	120	31	12	22	33	1.91
45703375--45703404	2	15.0	2	92	0	51	53	0	46	0	1.00
45708771--45708828	18	3.2	18	78	11	73	41	3	0	55	1.17
45708778--45708833	18	3.0	19	81	5	78	33	3	0	62	1.12
45720397--45720449	12	4.5	12	90	4	90	15	15	16	52	1.74
45720528--45720579	12	4.2	12	76	11	52	30	15	11	42	1.82
45720539--45720602	24	2.7	23	88	7	85	32	12	15	39	1.85
45720568--45720614	23	2.0	23	84	8	60	40	10	17	31	1.83
45722271--45722334	27	2.4	28	80	15	73	62	0	6	31	1.20
45723601--45723658	23	2.5	23	86	8	73	37	0	24	37	1.56
45725558--45725621	33	1.9	34	84	9	87	34	21	9	34	1.86
45734474--45734534	25	2.6	23	78	5	59	59	9	3	27	1.45
45734717--45734763	21	2.2	21	85	7	60	59	2	12	25	1.45
45739431--45739601	86	2.0	86	93	2	290	39	15	12	31	1.86
45743857--45743908	22	2.4	22	80	0	59	44	15	19	21	1.87
45743898--45744041	32	4.5	33	77	10	138	40	19	18	22	1.92
45743898--45744038	64	2.2	64	84	5	187	40	19	17	22	1.91
45744235--45744264	15	2.0	15	93	0	51	46	30	13	10	1.75
45744211--45744289	24	3.3	24	85	0	122	45	31	10	12	1.75
45744270--45744318	24	2.0	24	88	0	71	42	26	8	22	1.81
45744355--45744546	53	3.6	54	82	3	165	25	21	18	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45744352--45744558	27	7.8	26	77	4	171	25	21	18	34	1.96
45744335--45744546	80	2.7	80	85	2	248	25	22	18	33	1.96
45744519--45744665	54	2.7	55	83	6	176	25	19	18	37	1.94
45744553--45744665	27	4.2	26	87	6	145	24	18	17	38	1.92
45746548--45746600	21	2.5	21	93	0	88	33	20	16	28	1.95
45746935--45746986	24	2.2	24	89	0	77	55	9	1	32	1.43
45748906--45748957	24	2.2	24	89	0	77	55	9	1	32	1.43
45749185--45749218	15	2.3	15	100	0	68	35	17	17	29	1.93
45749212--45749278	34	1.9	34	87	6	98	38	16	13	31	1.87
45752205--45753006	150	5.3	151	91	3	1226	30	9	7	52	1.61
45753010--45755843	151	18.8	149	81	8	3060	50	7	9	31	1.64
45756633--45756684	11	4.7	11	75	17	54	25	28	1	44	1.65
45756633--45756682	22	2.3	22	86	6	66	24	30	2	44	1.65
45756644--45756743	51	2.0	51	89	0	155	26	26	2	46	1.64
45757462--45758479	509	2.0	509	100	0	2036	30	16	21	31	1.96
45759516--45759636	49	2.5	49	98	0	233	44	2	9	42	1.51
45764007--45764187	42	4.3	42	70	14	138	29	20	19	30	1.97
45764621--45764759	45	3.1	45	70	8	131	26	28	19	25	1.99
45764637--45764771	44	3.1	44	71	12	141	25	27	20	25	1.99
45764607--45764779	88	2.0	88	91	0	283	24	27	21	26	1.99
45766015--45766067	8	6.5	8	81	18	65	13	11	0	75	1.05
45766022--45766048	14	1.9	14	100	0	54	11	7	0	81	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45766529--45766557	13	2.3	13	94	5	51	0	10	6	82	0.83
45772820--45772882	33	1.9	33	86	0	90	61	3	1	33	1.21
45772817--45772865	3	16.3	3	87	8	73	63	0	0	36	0.95
45773457--45773491	14	2.4	14	90	4	52	0	2	8	88	0.61
45774961--45775002	23	1.9	22	90	9	68	50	0	2	47	1.14
45774965--45775012	23	2.2	22	85	14	64	50	0	2	47	1.12
45778162--45780357	69	31.9	69	99	0	4333	47	5	5	40	1.51
45782981--45783021	21	2.0	21	85	0	55	46	0	34	19	1.50
45787309--45787561	46	5.6	46	94	1	424	33	15	22	28	1.94
45799993--45800029	9	4.1	9	92	0	65	29	10	13	45	1.77
45801552--45801590	19	2.1	19	100	0	78	23	20	10	46	1.81
45804087--45804123	15	2.5	15	95	0	65	35	18	13	32	1.90
45804826--45804871	8	5.1	9	82	12	51	56	0	0	43	0.99
45806639--45806668	16	1.9	15	93	6	51	46	20	0	33	1.51
45810754--45810780	5	5.4	5	100	0	54	18	0	0	81	0.69
45812609--45812650	21	2.1	19	83	16	50	42	0	14	42	1.45
45813656--45813690	15	2.3	15	95	0	61	65	11	0	22	1.24
45813707--45813749	23	1.9	22	85	4	59	67	6	2	23	1.27
45814110--45814153	23	2.0	22	90	4	70	61	4	0	34	1.16
45815944--45815969	2	13.0	2	100	0	52	50	0	0	50	1.00
45815985--45816037	16	3.4	15	75	17	54	33	0	0	66	0.92
45816122--45816154	18	1.9	17	88	11	50	57	9	3	30	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45816587--45816667	31	2.7	29	79	12	74	46	0	3	49	1.19
45827118--45827146	13	2.1	14	93	6	51	27	6	6	58	1.50
45834913--45834943	16	1.9	16	100	0	62	58	6	0	35	1.24
45834929--45835016	37	2.3	38	82	9	106	53	6	2	37	1.40
45839822--45839860	17	2.3	17	86	8	53	48	0	2	48	1.15
45840200--45840236	12	2.8	14	80	16	51	51	0	13	35	1.41
45850057--45850088	16	1.9	17	93	6	57	37	21	0	40	1.54
45850250--45850362	41	2.7	42	84	5	140	30	29	17	23	1.97
45850250--45850406	43	3.7	42	74	16	146	30	28	17	22	1.97
45850250--45850405	84	1.9	83	81	12	194	30	28	17	23	1.97
45857676--45857831	84	1.9	84	84	10	212	30	29	17	22	1.97
45857676--45857832	43	3.7	42	77	14	171	29	29	18	22	1.97
45859874--45859909	15	2.5	15	95	4	65	27	5	13	52	1.63
45870618--45870653	15	2.4	15	95	0	63	30	8	25	36	1.85
45875318--45875366	22	2.3	22	89	3	82	38	8	26	26	1.84
45875700--45875724	13	1.9	13	100	0	50	16	0	24	60	1.36
45881666--45881698	11	3.1	11	91	8	59	27	0	39	33	1.57
45882123--45882203	26	3.1	26	80	7	67	18	18	20	41	1.90
45888880--45889033	26	6.1	25	76	8	136	16	22	22	37	1.94
45888914--45889041	24	5.2	24	75	12	91	19	24	21	34	1.96
45888892--45889032	49	2.8	50	76	7	142	17	24	21	36	1.95
45888950--45889097	73	2.0	72	81	8	167	19	23	20	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45889875--45889915	13	3.2	13	100	0	82	39	7	7	46	1.60
45906217--45906289	32	2.3	32	92	0	128	23	30	2	43	1.67
45908172--45908316	28	5.2	28	85	2	168	33	23	20	22	1.97
45908425--45908472	26	1.9	24	90	0	60	37	27	20	14	1.92
45908626--45909357	27	27.2	26	79	5	319	19	19	18	42	1.89
45908642--45909357	161	4.4	161	81	6	693	19	18	18	42	1.89
45913748--45913802	16	3.4	16	69	18	51	23	29	0	47	1.52
45913729--45913803	32	2.3	32	93	0	123	24	28	1	46	1.60
45916282--45916312	7	4.6	7	96	4	55	0	0	58	41	0.98
45941001--45941102	30	3.4	30	76	0	87	21	24	12	41	1.88
45945003--45945027	11	2.3	11	100	0	50	8	16	0	76	1.02
45949720--45949761	17	2.5	17	96	0	75	33	0	2	64	1.07
45949923--45950063	59	2.4	58	79	10	171	24	19	7	48	1.75
45950160--45950203	7	6.3	7	89	10	72	29	11	29	29	1.92
45950482--45950633	59	2.6	59	80	7	166	52	9	13	23	1.70
45952655--45952697	16	2.6	17	82	7	54	53	4	0	41	1.21
45956368--45956542	23	7.6	23	80	0	143	45	21	13	18	1.84
45956369--45956542	69	2.5	69	79	3	181	45	21	13	18	1.84
45958898--45958950	22	2.4	21	81	12	61	71	0	24	3	1.02
45973683--45973727	21	2.1	21	95	0	81	26	24	13	35	1.92
45973895--45973929	17	2.1	17	100	0	70	28	17	31	22	1.96
45974483--45974517	12	2.9	12	100	0	70	8	17	0	74	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45976276--45976315	19	2.0	20	85	4	55	37	15	0	47	1.45
45977030--45977097	33	2.1	33	97	0	127	32	17	16	33	1.92
45978541--45978598	25	2.3	25	87	3	89	22	43	12	22	1.86
45982962--45983001	18	2.2	18	86	0	53	27	2	5	65	1.27
45996079--45996117	19	2.1	19	100	0	78	25	25	10	38	1.87
45996645--45996677	14	2.4	14	94	0	57	51	6	27	15	1.66
46001199--46001354	25	6.2	24	72	8	107	31	20	27	20	1.97
46001263--46001377	50	2.3	50	85	5	160	35	20	25	19	1.95
46009147--46009268	36	3.4	36	81	1	120	41	31	11	15	1.83
46009164--46009268	36	2.9	36	82	1	122	40	30	12	16	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187