genome.fa.s15.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  154  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46377422--46377455	5	7.0	5	86	6	52	0	17	2	79	0.86
46377412--46377455	14	3.1	14	83	3	52	0	22	2	75	0.92
46380200--46380265	35	1.9	33	82	11	80	34	3	13	48	1.58
46381226--46381295	17	4.1	17	81	7	70	25	5	22	45	1.74
46381283--46381341	17	3.5	17	79	4	66	33	10	15	40	1.81
46381239--46381339	34	3.0	34	81	8	91	30	6	18	43	1.77
46387372--46387404	16	2.1	16	94	0	57	39	0	0	60	0.97
46399341--46399440	49	2.0	49	90	3	157	38	32	8	22	1.83
46401067--46401152	36	2.4	36	88	0	127	34	2	16	46	1.60
46401173--46401239	35	1.9	35	93	0	116	37	5	11	44	1.66
46401241--46401265	13	1.9	13	100	0	50	40	0	4	56	1.18
46405556--46405592	18	2.1	18	94	0	65	45	5	40	8	1.56
46405575--46405678	44	2.3	46	86	5	140	44	7	35	12	1.71
46409053--46409364	50	6.2	50	73	4	243	23	18	22	34	1.96
46409088--46409393	100	3.1	100	90	0	470	23	19	23	33	1.97
46409239--46409393	50	3.1	50	66	14	138	25	18	21	33	1.97
46409632--46409725	44	2.1	44	92	0	152	26	24	18	30	1.97
46409440--46409822	142	2.7	142	93	0	633	28	21	16	33	1.95
46409837--46410325	131	3.8	130	88	4	740	26	24	18	29	1.98
46411575--46411618	7	6.0	7	83	5	52	13	13	0	72	1.12
46411575--46411620	15	3.0	15	79	20	51	13	13	0	73	1.09
46411584--46411624	14	2.9	14	89	10	57	9	9	0	80	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46418429--46418484	3	18.7	3	96	0	103	33	0	0	66	0.92
46420236--46420286	26	1.9	26	84	11	68	33	19	21	25	1.97
46420455--46420618	41	4.0	41	74	12	156	19	17	26	36	1.94
46420413--46420612	83	2.4	83	81	6	210	18	18	27	36	1.94
46420455--46420612	82	1.9	83	87	3	230	18	17	26	36	1.94
46420372--46420611	124	1.9	124	79	6	263	18	18	26	36	1.94
46420370--46420625	41	6.2	40	69	9	131	18	18	27	35	1.94
46421548--46421581	7	4.9	7	96	0	59	17	0	52	29	1.45
46423871--46423927	26	2.2	26	93	0	96	38	14	3	43	1.62
46424515--46424658	69	2.1	69	90	0	225	43	6	6	43	1.56
46424899--46424957	16	3.7	16	88	0	91	49	18	1	30	1.58
46424910--46424959	9	6.0	9	77	17	54	48	20	0	32	1.50
46428101--46428248	66	2.2	66	87	2	208	40	17	25	16	1.90
46428126--46428270	66	2.2	66	86	2	193	41	16	26	15	1.88
46428627--46428992	43	8.5	43	85	1	446	23	18	30	27	1.98
46436500--46436545	23	2.1	23	88	8	69	41	0	0	58	0.98
46436543--46436595	22	2.6	22	85	11	69	47	9	1	41	1.47
46437526--46437570	24	1.9	23	81	4	54	44	0	2	53	1.13
46441097--46442349	21	58.9	21	84	4	1627	23	0	31	44	1.60
46441097--46442349	64	19.6	63	86	3	1627	23	0	31	44	1.60
46443024--46443090	29	2.3	30	77	12	75	11	17	40	29	1.86
46443769--46443812	20	2.1	21	88	12	65	50	4	0	45	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46449506--46449603	51	1.9	51	89	4	153	45	2	25	26	1.64
46449565--46449630	11	5.9	11	73	22	50	45	1	28	24	1.62
46449565--46449620	22	2.6	22	76	18	64	44	1	28	25	1.64
46457671--46457731	31	2.0	31	90	6	97	60	0	1	37	1.07
46457671--46457764	11	8.9	11	75	14	65	60	0	2	37	1.09
46457671--46457797	42	3.0	41	94	3	218	62	0	2	35	1.08
46457688--46457753	31	2.1	31	86	5	89	65	0	3	31	1.08
46457730--46457794	30	2.1	31	83	8	80	64	0	3	32	1.09
46459359--46459414	27	2.1	27	86	0	76	17	28	35	17	1.93
46459369--46459422	27	2.0	27	85	0	72	16	27	33	22	1.95
46459581--46459659	9	8.3	10	81	18	55	64	0	35	0	0.94
46459616--46459657	3	14.3	3	95	5	77	69	0	30	0	0.89
46459665--46459689	13	1.9	13	100	0	50	40	4	16	40	1.67
46459813--46459904	27	3.2	27	67	16	76	32	0	14	53	1.41
46459781--46459903	60	2.1	59	93	1	210	34	0	11	52	1.43
46459983--46460424	103	4.3	102	82	9	481	30	0	14	53	1.48
46464145--46464197	23	2.4	22	76	20	56	9	18	1	69	1.25
46467052--46467121	33	2.1	33	84	5	88	14	47	12	25	1.80
46467408--46467536	43	3.1	43	67	17	110	27	7	7	56	1.55
46467374--46467569	80	2.5	78	85	4	259	25	7	9	57	1.56
46468879--46468925	19	2.5	19	92	0	76	31	10	4	53	1.55
46472240--46472283	22	2.0	23	81	4	54	27	0	45	27	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46472311--46472368	29	2.0	30	86	6	84	39	0	43	17	1.49
46472515--46472562	16	3.0	16	90	0	69	50	33	2	14	1.55
46472516--46472563	4	12.0	4	84	0	60	50	31	2	16	1.57
46474060--46474161	52	2.0	52	94	1	179	32	17	20	29	1.96
46475492--46475518	5	5.4	5	100	0	54	0	59	40	0	0.98
46475664--46475710	22	2.1	22	84	7	60	36	2	4	57	1.30
46475745--46475925	53	3.7	53	73	21	194	48	7	3	40	1.49
46475759--46475942	93	2.0	93	96	0	341	48	7	4	39	1.52
46475987--46476043	16	3.6	16	92	0	96	45	5	3	45	1.43
46476017--46476077	22	2.7	23	87	10	81	45	1	3	49	1.28
46478133--46478187	6	9.5	6	78	11	53	47	5	14	32	1.67
46478150--46478187	12	3.2	12	85	7	60	52	5	10	31	1.58
46478153--46478192	11	3.5	11	86	3	53	55	5	10	30	1.54
46480322--46480480	79	2.0	78	85	3	212	27	13	17	42	1.86
46483503--46483552	19	2.5	20	75	21	50	38	6	0	56	1.24
46483572--46483625	16	3.2	17	79	7	58	59	9	5	25	1.50
46483588--46483832	89	2.7	88	88	4	323	57	12	5	24	1.57
46489939--46490031	19	4.8	19	75	6	80	30	2	19	48	1.61
46490000--46490100	32	2.8	36	76	17	102	27	8	19	43	1.81
46490012--46490081	32	2.2	32	89	0	104	25	11	21	41	1.86
46490044--46490127	39	2.2	39	82	4	98	27	8	19	45	1.78
46490120--46490166	23	2.0	23	95	0	85	31	4	14	48	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46490657--46490686	6	5.0	6	100	0	60	33	16	0	50	1.46
46493758--46494971	607	2.0	607	99	0	2419	22	30	16	29	1.96
46502522--46502554	17	1.9	17	100	0	66	48	0	6	45	1.27
46513603--46513676	38	1.9	38	97	0	139	45	20	1	32	1.59
46513844--46513877	16	2.1	17	88	5	52	44	11	0	44	1.40
46515374--46515424	21	2.4	21	80	0	57	29	25	9	35	1.88
46516419--46516510	23	3.7	23	69	23	60	30	21	11	35	1.90
46521963--46521994	16	1.9	17	93	6	57	37	21	0	40	1.54
46522155--46522311	43	3.7	43	77	13	173	29	28	19	23	1.98
46522155--46522309	84	1.8	84	84	10	210	29	28	18	23	1.98
46531242--46531274	12	2.8	12	90	4	50	75	0	24	0	0.80
46530666--46533105	772	3.2	760	88	3	3444	40	21	14	24	1.90
46530676--46533105	759	3.2	754	87	3	3383	40	21	14	24	1.90
46541818--46541912	41	2.3	41	96	0	172	30	27	24	17	1.97
46543232--46543265	12	2.9	12	91	4	52	76	0	23	0	0.79
46543661--46548666	756	6.6	764	83	5	5736	41	20	14	23	1.89
46548004--46549336	667	2.0	670	85	3	1783	44	21	12	21	1.85
46549151--46549180	12	2.5	12	94	0	51	73	0	26	0	0.84
46548673--46550829	769	2.8	763	86	2	2856	41	21	14	22	1.89
46558472--46558503	12	2.7	12	95	0	55	21	37	18	21	1.94
46560289--46560553	40	6.7	40	85	5	286	26	27	21	24	1.99
46560256--46560553	80	3.7	80	79	9	263	25	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46560485--46560562	40	1.9	41	82	10	97	26	28	20	24	1.99
46576923--46576967	18	2.5	18	82	7	56	37	4	17	40	1.70
46580862--46581164	151	2.0	151	97	0	570	39	18	16	25	1.91
46581177--46581218	11	4.0	11	75	12	52	16	7	23	52	1.68
46592121--46592161	16	2.5	17	92	4	66	36	34	4	24	1.77
46592262--46592300	15	2.5	16	91	4	62	33	35	5	25	1.78
46596510--46596607	17	5.4	17	65	21	56	32	4	13	50	1.60
46596489--46596646	37	4.3	37	88	4	223	33	5	13	47	1.65
46596651--46596711	9	6.6	9	85	7	86	21	8	31	39	1.82
46596654--46596713	29	2.1	29	93	0	102	18	8	31	41	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187