genome.fa.s15.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  147  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44351931--44352073	20	7.0	20	62	12	58	20	27	16	34	1.94
44351863--44352092	82	2.8	83	85	5	306	20	28	17	33	1.95
44360177--44360232	25	2.2	26	84	9	80	10	7	16	66	1.44
44360185--44360232	24	2.0	25	91	4	80	10	8	12	68	1.39
44360190--44360242	25	2.2	24	82	3	61	13	7	11	67	1.40
44364826--44364881	29	1.9	30	85	3	78	58	7	3	30	1.42
44370644--44370690	21	2.2	22	92	3	78	21	38	19	21	1.94
44378137--44378215	37	2.1	37	88	4	115	25	30	18	25	1.98
44378325--44378426	47	2.2	47	98	0	195	30	28	7	33	1.85
44380968--44381038	29	2.4	32	75	17	82	28	1	4	66	1.19
44381339--44381416	26	3.0	26	96	0	147	42	26	2	28	1.69
44381391--44381480	46	2.0	46	100	0	180	35	23	2	38	1.67
44381571--44381739	83	2.0	83	98	0	329	39	15	13	30	1.87
44381768--44381999	114	2.0	114	98	0	446	37	9	15	37	1.79
44393756--44393911	84	1.8	85	82	11	205	28	20	23	26	1.99
44393894--44394649	44	17.4	45	72	13	235	30	20	22	26	1.98
44393744--44394644	216	4.2	217	93	0	1520	29	20	22	26	1.99
44394272--44394516	133	1.9	127	80	10	289	29	20	23	26	1.99
44393744--44394646	433	2.1	433	92	1	1522	29	20	22	26	1.99
44395918--44395988	29	2.4	32	75	17	82	28	1	4	66	1.19
44399724--44399785	24	2.7	21	71	14	52	30	9	1	58	1.40
44401782--44401980	110	1.8	110	85	4	285	23	21	29	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44401878--44402090	62	3.5	62	87	0	302	23	22	29	25	1.99
44408560--44408738	38	4.7	38	81	1	216	36	27	20	15	1.93
44414159--44414202	22	2.0	22	82	8	54	25	50	9	15	1.74
44414618--44414643	3	8.7	3	100	0	52	30	0	0	69	0.89
44415285--44415363	13	6.0	13	88	2	113	32	1	8	56	1.38
44415399--44415432	15	2.3	15	89	0	50	38	14	5	41	1.70
44416589--44416630	9	4.7	9	79	8	50	45	23	9	21	1.81
44416633--44416698	17	3.7	17	73	11	69	48	15	3	33	1.60
44416630--44416701	37	1.9	37	94	0	126	47	15	2	34	1.60
44416829--44416906	38	2.0	39	90	7	124	21	2	24	51	1.60
44417036--44417094	18	3.6	18	70	25	67	27	20	23	28	1.99
44417039--44417108	30	2.3	30	95	0	131	22	22	25	28	1.99
44422395--44422516	23	5.3	23	83	6	158	32	27	18	21	1.97
44422395--44422516	46	2.7	46	89	2	183	32	27	18	21	1.97
44422742--44422780	18	2.2	17	86	13	53	46	20	0	33	1.51
44424708--44424750	11	3.8	11	82	17	61	32	2	2	62	1.20
44424711--44424754	23	1.9	23	95	0	79	34	2	4	59	1.30
44426546--44426604	25	2.4	25	94	0	109	38	3	0	57	1.15
44430099--44430123	2	12.5	2	100	0	50	0	52	0	48	1.00
44436389--44436447	12	5.3	11	73	17	50	64	3	1	30	1.20
44436382--44436459	21	3.8	21	71	22	67	58	2	1	37	1.20
44439286--44439315	16	1.9	15	93	6	51	26	3	0	70	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44439849--44439919	22	3.2	21	75	18	56	0	32	0	67	0.91
44439842--44439971	36	3.6	36	75	14	110	0	30	0	69	0.89
44439881--44439948	31	2.2	32	89	5	104	0	32	0	67	0.91
44439901--44439968	22	3.2	20	75	16	66	0	29	0	70	0.87
44440015--44440084	25	2.7	26	86	6	97	50	0	8	41	1.33
44444797--44444822	5	5.2	5	100	0	52	42	19	19	19	1.90
44445837--44445873	9	4.1	9	92	0	65	29	10	13	45	1.77
44445927--44445957	9	3.4	9	90	0	53	38	22	12	25	1.90
44450674--44450728	29	2.0	27	85	7	74	34	21	1	41	1.64
44451979--44452187	50	4.2	50	73	8	183	22	20	20	37	1.95
44456183--44456310	45	3.1	42	85	10	158	49	19	19	11	1.79
44456668--44456699	16	2.0	16	100	0	64	31	0	12	56	1.37
44468785--44468818	12	2.9	12	86	4	52	32	0	0	67	0.91
44469615--44469690	33	2.3	33	86	0	107	38	2	3	55	1.33
44471823--44471861	18	2.0	20	85	9	55	48	10	12	28	1.74
44478292--44478338	23	1.9	26	87	12	73	38	21	0	40	1.53
44480758--44480992	29	8.2	29	72	7	160	38	22	16	22	1.93
44486652--44486695	22	2.0	23	86	4	63	38	0	6	54	1.27
44490638--44490677	20	2.0	20	95	0	71	20	17	10	52	1.72
44500332--44500658	27	12.1	27	83	3	374	41	24	14	18	1.88
44502516--44502596	11	7.3	11	69	8	56	13	4	43	38	1.66
44509764--44509827	13	4.9	13	92	0	101	39	25	9	26	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44511279--44511785	251	2.0	251	98	0	969	31	17	12	37	1.87
44517582--44517646	34	1.9	34	90	0	103	23	24	20	32	1.98
44517586--44517664	34	2.3	34	80	10	90	24	26	21	27	1.99
44517969--44518011	21	2.0	21	81	9	50	46	23	2	27	1.64
44525120--44525201	34	2.4	34	84	10	105	25	26	20	26	1.99
44529593--44529641	24	2.0	24	96	0	89	40	8	10	40	1.69
44534099--44534171	26	2.8	25	79	6	76	32	19	8	39	1.81
44553690--44553734	21	2.1	22	84	12	58	40	0	13	46	1.43
44554154--44554229	39	1.9	39	86	0	107	17	31	15	35	1.91
44555166--44555199	18	1.9	18	88	5	52	35	14	0	50	1.44
44557366--44557429	23	2.8	24	83	9	80	39	18	12	29	1.88
44557388--44557429	12	3.6	12	77	6	50	40	21	14	23	1.90
44557636--44557683	24	2.0	24	87	0	69	50	18	12	18	1.78
44557635--44557677	12	3.6	12	80	0	50	55	18	9	16	1.67
44563989--44564141	81	1.9	80	91	1	252	49	5	19	26	1.69
44564736--44564767	14	2.4	14	94	5	57	12	9	18	59	1.59
44567616--44567649	17	2.0	17	100	0	68	29	5	11	52	1.61
44568525--44568568	6	7.2	6	86	2	61	2	59	0	38	1.10
44572895--44572947	21	2.5	21	84	0	61	28	33	11	26	1.91
44573207--44573247	20	2.0	20	95	0	73	24	7	9	58	1.55
44575666--44575858	97	2.1	94	82	11	231	55	6	6	31	1.50
44584225--44584273	24	2.0	24	88	0	71	59	12	14	14	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44584437--44584500	22	3.0	22	93	2	103	42	0	48	9	1.35
44584445--44584504	26	2.3	26	97	0	111	41	0	50	8	1.33
44584445--44584507	4	15.8	4	93	0	81	42	0	49	7	1.32
44584542--44584578	2	18.5	2	100	0	74	48	0	51	0	1.00
44595263--44595311	20	2.5	19	86	3	62	26	22	0	51	1.49
44606279--44606423	27	5.4	27	78	4	141	33	17	15	34	1.91
44606279--44606423	54	2.7	54	85	2	184	33	17	15	34	1.91
44611280--44611389	47	2.3	47	88	0	157	36	20	13	29	1.91
44623527--44623595	29	2.4	29	83	7	79	46	10	7	36	1.65
44628740--44628795	9	6.5	8	76	19	51	32	1	1	64	1.14
44628738--44628796	27	2.2	26	80	14	68	32	1	1	64	1.13
44628738--44628796	17	3.4	17	76	19	59	32	1	1	64	1.13
44631415--44631481	17	3.7	17	70	25	57	46	23	1	28	1.61
44631375--44631510	39	3.5	39	89	2	186	44	22	3	29	1.70
44636373--44636482	41	2.8	40	73	9	100	33	22	16	27	1.95
44637443--44637558	5	23.6	5	84	8	150	56	0	0	42	1.11
44637761--44637786	13	2.0	13	100	0	52	46	0	0	53	1.00
44639738--44639854	25	5.0	22	78	11	83	40	20	22	17	1.92
44639784--44639868	25	3.4	25	90	0	125	37	22	22	17	1.94
44640545--44640606	5	12.4	5	100	0	124	59	0	0	40	0.97
44640554--44640653	35	2.9	33	81	11	87	52	3	0	45	1.16
44644231--44644287	22	2.6	23	78	13	66	42	21	22	14	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44644277--44644336	25	2.4	25	88	0	84	38	23	23	15	1.92
44645298--44645339	5	8.4	5	100	0	84	59	0	0	40	0.97
44645322--44645386	35	1.9	33	84	6	85	47	4	0	47	1.22
44648097--44648218	39	3.1	38	74	11	122	32	21	16	29	1.95
44656849--44656873	10	2.5	10	100	0	50	88	0	12	0	0.53
44659053--44660827	427	4.0	428	77	12	1505	32	13	13	40	1.83
44659480--44661064	471	3.4	468	86	6	2294	32	13	13	40	1.84
44663578--44663800	51	4.4	51	75	7	175	25	15	28	30	1.96
44663612--44663796	101	1.8	102	89	5	295	24	17	27	31	1.97
44663715--44663794	28	3.0	28	66	23	73	26	15	27	31	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187