genome.fa.s15.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  129  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38438419--38439042	261	2.4	262	86	2	847	25	21	25	26	2.00
38439008--38439394	44	8.8	44	83	2	436	30	15	25	28	1.96
38439007--38439424	89	4.7	88	78	6	400	30	15	25	28	1.96
38439009--38439424	133	3.1	133	85	1	451	30	15	25	28	1.96
38439008--38439394	177	2.2	175	90	0	594	30	15	25	28	1.96
38439729--38439800	19	3.7	19	90	7	117	34	11	16	37	1.84
38442496--38442520	9	2.8	9	100	0	50	0	20	0	80	0.72
38450811--38450850	19	2.1	19	90	0	62	32	2	5	60	1.32
38450858--38450921	28	2.2	29	86	2	94	28	3	3	65	1.23
38450889--38450937	20	2.5	20	82	0	53	32	2	4	61	1.26
38451299--38451333	15	2.3	15	95	0	61	22	0	11	65	1.24
38462304--38462352	26	1.9	26	88	12	75	16	12	8	63	1.51
38463015--38464206	44	27.0	44	77	6	972	28	16	25	28	1.97
38463017--38464180	88	13.2	89	87	3	1190	28	16	25	29	1.97
38463019--38464206	177	6.7	178	86	4	1247	28	16	25	28	1.97
38466264--38466322	30	2.0	30	86	6	84	28	3	3	64	1.26
38466646--38466698	27	2.0	27	81	7	63	24	5	3	66	1.31
38468242--38468352	58	2.0	54	82	7	132	52	3	13	30	1.58
38469749--38470360	40	14.7	40	76	11	400	23	20	23	32	1.98
38469749--38470369	82	7.5	82	72	13	418	23	20	23	32	1.98
38469788--38470388	127	4.8	127	87	2	847	23	20	23	33	1.97
38470136--38470317	43	4.3	43	66	17	112	24	16	23	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38470442--38470924	50	9.7	50	69	4	267	25	21	22	30	1.99
38470384--38470939	100	5.6	100	85	2	724	24	21	22	30	1.99
38470384--38470939	199	2.8	199	89	0	851	24	21	22	30	1.99
38470982--38471253	44	6.2	44	78	3	280	27	26	16	28	1.97
38470982--38471255	132	2.1	132	95	1	496	27	26	16	29	1.97
38471581--38471634	24	2.2	25	81	15	69	27	20	14	37	1.92
38472957--38473003	17	2.8	16	78	15	51	0	6	10	82	0.82
38476711--38476777	31	2.2	29	78	5	71	53	0	10	35	1.35
38479796--38479844	23	2.1	23	84	0	62	42	12	30	14	1.82
38480904--38480959	25	2.2	25	90	0	85	62	3	0	33	1.12
38480919--38480960	12	3.4	12	75	18	50	59	2	0	38	1.10
38484200--38484307	37	2.9	36	78	18	109	40	3	3	51	1.37
38488329--38488414	21	4.0	22	80	8	106	38	23	20	17	1.93
38490585--38490636	17	3.2	15	76	15	50	1	30	0	67	1.02
38491565--38491648	34	2.4	34	80	2	96	28	15	14	41	1.86
38491693--38491866	45	3.9	45	81	6	199	28	20	13	37	1.91
38492423--38492468	24	1.9	24	90	0	74	54	13	2	30	1.50
38494386--38494431	24	1.9	24	90	0	74	54	13	2	30	1.50
38495683--38495733	15	3.1	15	77	20	57	35	0	1	62	1.06
38495693--38495735	19	2.3	18	88	11	61	32	0	2	65	1.06
38495701--38495752	25	2.1	25	88	0	77	36	0	1	61	1.07
38497342--38497383	21	2.0	22	85	4	59	28	0	26	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38498756--38499096	113	3.0	115	84	3	449	25	21	26	26	1.99
38499695--38499727	14	2.3	15	89	5	50	33	0	30	36	1.58
38499914--38500181	97	2.9	89	80	11	308	28	1	27	41	1.66
38500376--38500538	83	2.0	84	82	3	204	30	17	20	31	1.96
38500816--38501071	84	3.0	84	80	6	254	32	15	19	32	1.93
38500851--38501072	84	2.6	83	83	5	261	32	15	20	31	1.93
38501361--38501640	84	3.3	84	83	5	257	29	16	21	32	1.96
38500313--38501788	545	2.7	544	91	0	2366	29	15	20	34	1.94
38503225--38503294	18	3.7	18	78	17	88	44	11	0	44	1.40
38503225--38503301	39	1.9	41	94	5	140	44	10	0	45	1.38
38503290--38503323	17	2.0	17	94	0	59	44	0	0	55	0.99
38503519--38503576	30	1.9	30	82	6	73	46	13	5	34	1.66
38503537--38503906	9	42.3	9	67	18	151	48	18	1	31	1.59
38503563--38503862	16	17.9	16	68	21	145	49	19	2	30	1.59
38503655--38503758	28	3.8	28	75	8	81	51	20	0	27	1.47
38503650--38503760	44	2.5	44	80	14	120	51	19	0	28	1.47
38503537--38503904	25	14.8	25	69	17	100	48	18	1	31	1.59
38505688--38505734	21	2.2	21	96	0	85	34	19	46	0	1.50
38506090--38506224	43	3.2	42	77	6	137	24	20	27	28	1.99
38506318--38506361	22	2.0	22	86	0	61	43	27	20	9	1.82
38509033--38509085	27	2.0	27	96	0	97	43	1	24	30	1.65
38512392--38512423	14	2.1	16	88	11	50	21	9	6	62	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38513827--38513953	43	3.0	43	87	2	175	18	18	29	33	1.95
38514903--38514973	30	2.4	30	90	0	106	29	18	4	47	1.67
38514969--38515038	30	2.4	29	85	7	88	30	21	10	38	1.86
38514969--38515046	29	2.7	29	86	6	95	28	24	10	37	1.88
38515186--38515230	23	1.9	24	90	4	74	64	2	17	15	1.39
38515743--38515790	25	1.9	25	82	0	60	75	2	18	4	1.07
38516466--38516522	17	3.3	17	78	4	60	38	14	8	38	1.77
38516576--38516993	17	23.8	17	67	17	101	30	12	11	46	1.76
38516576--38516626	20	2.7	19	82	11	70	35	13	11	39	1.82
38516706--38516994	17	16.3	19	70	13	138	32	12	10	44	1.76
38516574--38516994	18	23.9	18	69	15	190	30	12	10	46	1.76
38516972--38517016	21	2.2	20	96	4	81	48	8	8	33	1.65
38520751--38520775	9	2.8	9	100	0	50	60	0	32	8	1.26
38529557--38529615	25	2.4	25	85	5	75	84	5	8	1	0.82
38529557--38529615	17	3.2	17	76	11	55	84	5	8	1	0.82
38529557--38529615	9	6.4	9	75	16	50	84	5	8	1	0.82
38530493--38530804	80	4.0	79	81	6	348	30	15	19	34	1.92
38530493--38530804	78	4.0	79	82	7	368	30	15	19	34	1.92
38530718--38530896	96	1.9	94	83	4	234	35	13	18	31	1.90
38530815--38531002	75	2.5	75	93	3	317	30	15	22	31	1.95
38530817--38531057	75	3.2	74	87	5	315	28	17	20	34	1.95
38531392--38531567	30	5.9	29	73	15	130	30	22	7	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38531699--38531743	23	1.9	24	90	4	74	64	2	17	15	1.39
38532269--38532331	24	2.6	24	77	5	65	71	4	19	4	1.22
38532993--38533038	17	2.6	18	80	16	60	32	15	8	43	1.77
38533080--38533452	18	20.9	17	69	18	122	30	12	11	44	1.78
38533074--38533137	20	3.3	20	76	14	71	42	12	10	34	1.78
38533231--38533456	19	12.4	17	73	18	75	31	14	11	43	1.80
38533291--38533328	20	1.9	19	89	5	58	39	10	10	39	1.74
38533217--38533442	91	2.5	90	89	5	330	33	13	11	41	1.80
38533080--38533488	36	11.4	36	70	11	159	30	13	11	44	1.79
38533087--38533626	17	30.8	18	69	15	260	29	12	11	46	1.76
38533468--38533526	28	2.1	28	100	0	118	20	10	6	62	1.49
38533536--38533646	17	6.4	17	77	10	98	36	10	10	42	1.75
38537765--38537882	17	7.7	17	67	22	57	38	1	0	59	1.08
38537794--38537892	12	9.4	11	71	23	54	38	3	0	58	1.14
38537775--38537857	42	2.0	43	92	4	143	38	1	0	60	1.05
38537805--38537907	30	3.3	29	80	9	107	38	2	0	58	1.13
38537836--38537892	12	5.3	12	76	23	65	38	5	0	56	1.22
38537828--38537907	30	2.6	30	90	9	126	38	3	0	57	1.17
38537875--38537914	21	1.9	21	89	0	62	37	2	0	60	1.11
38537874--38537932	22	2.8	21	80	14	59	40	1	3	54	1.27
38538655--38538687	16	2.0	17	94	5	59	21	0	0	78	0.75
38540272--38540360	40	2.2	40	82	9	101	35	21	22	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38540399--38540972	113	5.1	113	95	0	896	27	24	21	26	1.99
38541065--38541174	41	2.7	41	81	5	107	16	27	31	24	1.96
38541658--38543450	796	2.3	785	94	2	3060	32	8	18	39	1.82
38543714--38543744	16	1.9	16	93	0	53	35	25	6	32	1.82
38544885--38544940	27	2.1	27	93	0	94	42	3	1	51	1.29
38544896--38544955	27	2.2	27	88	5	86	45	5	0	50	1.23
38545328--38545367	14	2.9	14	88	0	53	52	5	2	40	1.37
38551310--38551468	87	1.8	87	85	8	225	41	17	28	11	1.85
38551457--38551515	21	2.8	21	84	0	82	30	16	45	6	1.74
38551723--38551752	14	2.1	14	100	0	60	13	0	33	53	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187