genome.fa.s15.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  51  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15192403--15192682	146	1.9	145	86	6	397	53	1	1	43	1.18
15192725--15192771	18	2.8	16	84	12	58	78	2	4	14	0.99
15192723--15192833	22	5.3	20	66	20	57	76	2	5	15	1.08
15192775--15192842	22	3.1	21	74	14	57	77	1	7	13	1.03
15194384--15194426	22	2.0	22	90	0	68	9	18	27	44	1.80
15194585--15194729	43	3.4	43	81	5	159	19	19	25	35	1.95
15194722--15194923	43	4.6	43	76	10	187	30	31	17	20	1.96
15195224--15195265	21	2.2	18	84	16	50	4	47	16	30	1.67
15195229--15195319	21	4.3	21	78	0	92	6	42	15	35	1.73
15195297--15195437	66	2.1	66	87	5	196	14	27	18	39	1.89
15195330--15195460	66	2.0	66	84	3	174	16	23	18	41	1.89
15200864--15200897	16	2.1	16	94	0	59	32	0	14	52	1.42
15200878--15200933	25	2.2	25	83	0	67	35	5	14	44	1.68
15200935--15201132	9	22.7	9	65	16	60	38	3	14	43	1.61
15200977--15201055	34	2.3	34	80	0	86	41	1	13	43	1.53
15201055--15202103	34	28.7	34	66	19	342	39	2	10	48	1.50
15201150--15202140	56	17.7	56	99	0	1964	39	2	10	47	1.50
15202232--15202284	24	2.2	24	96	0	97	49	3	3	43	1.38
15203755--15203792	17	2.2	17	95	0	67	39	13	36	10	1.79
15204033--15204100	33	2.1	33	94	0	118	35	29	2	32	1.73
15204321--15204359	16	2.6	15	84	11	53	35	5	35	23	1.77
15205600--15205671	37	1.9	38	88	2	110	36	40	1	22	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15206473--15206998	41	12.8	41	82	3	590	32	27	23	16	1.96
15206515--15206998	83	5.9	83	93	1	742	32	27	23	16	1.96
15207049--15207175	40	3.2	39	76	5	112	18	25	21	35	1.95
15209896--15210031	40	3.4	38	74	8	103	42	19	18	19	1.89
15210063--15210224	40	4.0	40	81	4	175	20	18	27	32	1.96
15210069--15210253	81	2.3	80	86	5	248	22	18	25	34	1.96
15210069--15210253	40	4.6	40	80	7	171	22	18	25	34	1.96
15210695--15210942	73	3.4	73	81	6	279	25	22	26	26	2.00
15211215--15211261	19	2.6	17	84	12	67	21	0	46	31	1.51
15212089--15212150	32	2.0	32	87	3	90	51	8	1	38	1.41
15212366--15212579	7	28.4	7	68	13	86	19	1	42	35	1.62
15212365--15212495	38	3.5	38	89	2	192	18	2	41	37	1.63
15212424--15212580	62	2.6	62	94	4	275	20	1	42	35	1.60
15212473--15212519	24	2.0	24	95	0	85	17	0	51	31	1.46
15214281--15214373	16	6.0	16	73	16	81	31	13	19	35	1.91
15214289--15214368	14	5.4	14	69	19	63	32	13	18	35	1.90
15215755--15215928	47	3.8	47	79	11	227	37	15	3	43	1.64
15216022--15216127	17	6.4	17	70	20	82	47	12	0	40	1.41
15216021--15216127	9	11.9	9	70	19	64	46	13	0	40	1.43
15217734--15217781	21	2.3	21	88	0	69	35	18	43	2	1.62
15217745--15217814	33	2.1	33	83	0	86	32	18	45	2	1.64
15218978--15219081	7	14.6	7	75	7	57	20	0	36	43	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15218984--15219012	15	1.9	15	100	0	58	20	0	34	44	1.52
15218978--15219083	22	4.9	22	73	12	76	19	0	36	43	1.52
15223605--15223665	25	2.4	25	86	5	79	29	24	18	27	1.98
15223623--15223689	25	2.7	26	81	11	77	32	22	19	25	1.97
15226262--15226294	7	4.7	7	100	0	66	42	15	27	15	1.86
15233688--15233736	24	2.0	24	100	0	98	44	12	16	26	1.82
15243888--15243931	21	2.1	21	91	0	70	20	29	20	29	1.98
15248675--15248715	21	2.0	21	90	0	64	19	29	21	29	1.98
15254403--15254453	24	2.1	24	85	0	66	37	1	3	56	1.29
15256469--15256503	17	2.1	17	100	0	70	40	11	11	37	1.77
15258677--15258784	44	2.4	44	76	4	110	33	16	24	25	1.96
15258725--15259024	137	2.2	137	83	4	381	32	16	23	28	1.96
15259164--15259230	34	2.0	34	85	5	91	44	17	10	26	1.81
15259830--15259860	16	1.9	16	93	0	53	51	3	0	45	1.17
15267417--15267532	34	3.4	34	78	5	117	43	13	10	32	1.78
15267620--15267672	5	10.6	5	100	0	106	60	18	0	20	1.36
15268315--15268390	37	2.1	36	83	11	93	53	2	2	40	1.28
15268854--15269181	164	2.0	164	100	0	656	39	19	5	35	1.75
15272178--15272355	28	6.4	28	81	4	198	53	6	17	23	1.66
15272190--15272356	55	3.0	55	81	5	210	53	5	16	23	1.65
15273363--15273461	9	11.1	9	75	16	64	60	1	2	36	1.15
15273366--15273451	29	3.1	28	76	20	90	58	1	2	38	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15276572--15276601	13	2.3	13	94	0	51	20	0	0	80	0.72
15276608--15276670	26	2.3	27	86	10	85	36	0	1	61	1.05
15283264--15283308	18	2.5	18	82	7	56	26	42	13	17	1.86
15283533--15283578	18	2.6	17	86	10	65	36	21	8	32	1.84
15283561--15283615	21	2.6	21	82	0	74	36	16	5	41	1.71
15283646--15283691	18	2.6	17	86	10	65	36	21	8	32	1.84
15283503--15283728	113	2.0	113	99	0	443	34	21	9	34	1.85
15283674--15283732	21	2.8	21	84	0	82	37	18	5	38	1.73
15290379--15290408	13	2.3	13	94	0	51	43	0	56	0	0.99
15291237--15291625	108	3.6	107	88	3	552	29	17	19	33	1.95
15302850--15302905	24	2.3	24	90	6	87	33	12	21	32	1.91
15303226--15303603	44	8.6	44	78	3	368	30	21	23	23	1.99
15303219--15303603	131	2.9	131	94	0	664	30	22	23	23	1.99
15303219--15303600	87	4.4	88	76	3	279	30	22	23	23	1.99
15305554--15305878	108	3.1	104	85	7	422	29	18	19	32	1.96
15312951--15312993	22	1.9	23	81	13	54	48	0	13	37	1.43
15314477--15314517	18	2.3	18	91	4	66	46	2	0	51	1.14
15316252--15316337	39	2.2	39	82	10	104	40	15	2	41	1.59
15316405--15316474	25	2.8	25	82	0	86	32	18	22	25	1.97
15325572--15325615	21	2.1	21	95	0	79	11	15	29	43	1.82
15325757--15325942	43	4.4	41	69	14	108	30	29	18	20	1.97
15325822--15325967	43	3.4	43	77	2	150	26	32	15	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15326338--15326414	21	3.7	21	87	0	118	9	45	12	32	1.74
15326339--15326426	21	4.2	21	85	0	95	9	43	14	32	1.77
15326420--15326553	66	2.0	66	88	5	200	14	23	20	41	1.90
15328248--15329596	450	3.0	450	93	0	2290	34	19	15	31	1.92
15329929--15329969	21	2.0	20	90	4	64	39	39	0	21	1.54
15330048--15330077	7	4.3	7	95	0	51	43	40	0	16	1.48
15330913--15331069	41	3.8	42	82	8	155	32	27	19	21	1.97
15330913--15331069	83	1.9	83	83	10	205	32	27	19	21	1.97
15336255--15336366	42	2.7	42	85	2	154	16	22	17	42	1.88
15340221--15340375	84	1.8	84	86	5	224	21	26	34	17	1.96
15341034--15341071	20	1.9	20	84	10	51	34	0	13	52	1.40
15346196--15346240	21	2.1	21	100	0	90	42	20	15	22	1.89
15349297--15349342	19	2.4	19	88	3	74	60	2	0	36	1.09
15349616--15349648	3	10.7	3	93	6	57	63	0	0	36	0.95
15361357--15361394	20	1.9	20	88	0	58	50	5	10	34	1.59
15361401--15361456	23	2.5	22	85	5	67	55	5	3	35	1.40
15361397--15361457	21	2.8	24	72	23	62	54	4	4	36	1.44
15362098--15362143	17	2.6	18	80	13	51	76	2	6	15	1.09
15366910--15366942	11	3.0	11	91	8	50	0	12	0	87	0.53
15370864--15370971	23	5.0	22	80	7	123	37	23	22	17	1.94
15382557--15382584	5	5.6	5	100	0	56	64	17	0	17	1.30
15387813--15387945	61	2.2	59	78	12	139	44	2	4	48	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15388121--15388153	16	2.1	16	94	0	57	36	21	0	42	1.53
15401838--15402032	91	2.2	88	81	8	216	36	18	9	35	1.83
15402232--15402262	13	2.4	13	94	0	53	64	0	0	35	0.94
15402779--15402996	89	2.5	85	82	10	242	38	20	7	33	1.81
15408479--15408546	31	2.1	33	89	5	104	39	19	11	29	1.87
15410732--15410790	5	11.8	5	81	0	73	54	18	23	3	1.59
15418663--15418724	18	3.4	18	80	4	61	30	19	3	46	1.65
15421447--15421482	15	2.5	14	86	8	54	75	0	0	25	0.81
15422807--15422856	24	2.0	25	84	3	66	58	20	18	4	1.55
15422796--15422863	20	3.5	20	78	11	77	58	20	16	4	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187