genome.fa.s15.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  111  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32737846--32737939	24	4.0	24	67	18	72	43	18	2	36	1.62
32744261--32744341	21	3.8	22	77	4	85	30	25	13	29	1.94
32744271--32744341	21	3.3	21	80	2	88	30	25	12	30	1.93
32744261--32744341	42	1.9	43	92	2	137	30	25	13	29	1.94
32746849--32747042	44	4.4	44	79	4	203	40	22	13	23	1.90
32762166--32762597	136	3.2	136	90	3	646	26	28	13	31	1.94
32766141--32766327	89	2.1	90	85	4	254	35	18	11	34	1.86
32766443--32766489	19	2.4	20	82	7	60	63	2	0	34	1.06
32766444--32766525	9	8.9	9	69	14	51	63	1	1	34	1.10
32766438--32766580	46	3.1	46	76	14	127	65	1	2	30	1.16
32766456--32766525	28	2.6	26	75	8	68	62	0	1	35	1.04
32766511--32766629	19	6.3	19	69	17	61	64	2	6	26	1.31
32778897--32778943	21	2.3	20	85	3	58	34	6	0	59	1.23
32781083--32781134	23	2.3	23	83	6	61	46	3	0	50	1.20
32781148--32781192	21	2.1	21	91	0	72	60	6	0	33	1.23
32781535--32781578	20	2.2	21	84	8	56	56	0	2	40	1.11
32782106--32782217	9	11.5	10	72	19	51	39	1	0	58	1.15
32782136--32782173	18	2.1	19	90	9	62	52	0	0	47	1.00
32782124--32782191	29	2.3	29	87	0	91	45	1	0	52	1.09
32782602--32782633	5	6.4	5	100	0	64	43	0	0	56	0.99
32785119--32785169	21	2.4	21	96	0	93	43	7	11	37	1.71
32789212--32789556	167	2.0	170	92	6	570	36	19	6	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32789621--32789733	38	2.9	39	88	1	156	36	32	18	12	1.88
32792486--32792586	51	2.0	51	84	3	132	31	6	20	40	1.79
32796173--32796215	6	7.3	6	86	2	61	41	0	0	58	0.98
32796193--32796274	27	2.8	29	81	7	87	34	0	1	64	1.01
32796333--32796718	194	2.0	194	87	3	562	34	7	12	45	1.69
32812776--32812833	29	1.9	31	89	6	93	43	0	39	17	1.49
32819878--32820173	131	2.3	131	82	2	360	30	15	15	38	1.89
32826110--32826161	21	2.4	22	81	15	63	59	0	1	38	1.08
32826113--32826161	22	2.3	21	86	10	64	61	0	2	36	1.08
32826991--32827016	2	13.0	2	100	0	52	50	0	0	50	1.00
32829762--32829836	34	2.2	33	84	9	98	25	29	1	44	1.63
32829762--32829838	22	3.5	22	81	18	97	25	28	1	44	1.62
32829762--32829838	11	6.9	11	74	21	72	25	28	1	44	1.62
32829800--32829897	51	1.9	51	85	8	137	26	24	4	44	1.71
32830952--32830993	14	3.0	14	86	6	50	35	0	14	50	1.43
32831594--32831633	18	2.2	18	86	0	53	17	30	7	45	1.76
32831907--32832060	77	2.0	77	90	0	245	29	37	20	12	1.90
32832335--32833459	22	51.9	21	81	9	1146	43	30	0	25	1.60
32832339--32832641	65	5.0	54	83	11	187	41	34	0	23	1.55
32832392--32833459	43	24.3	43	82	7	1251	43	30	0	25	1.60
32832841--32832897	28	2.0	29	82	3	71	40	29	1	28	1.67
32832933--32832998	28	2.4	28	82	7	73	42	27	1	28	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32836515--32837076	126	4.5	125	82	2	637	31	21	16	30	1.95
32836510--32837076	251	2.3	250	84	2	728	31	21	16	30	1.95
32837190--32837220	9	3.4	9	100	0	62	54	32	0	12	1.38
32840821--32841960	381	3.0	381	98	0	2172	29	8	18	43	1.79
32843929--32843967	21	1.9	21	89	5	62	38	5	12	43	1.65
32844746--32845000	112	2.3	112	91	2	417	32	14	20	32	1.93
32847825--32847872	23	2.1	23	100	0	96	31	35	8	25	1.85
32851575--32851634	21	3.0	21	78	4	70	13	23	20	43	1.86
32858687--32858716	15	1.9	16	93	6	53	56	3	0	40	1.16
32858760--32858816	15	3.5	15	71	17	51	47	0	3	49	1.18
32859771--32859823	21	2.7	19	85	11	63	39	16	5	37	1.73
32861760--32861798	16	2.4	16	91	0	60	38	0	28	33	1.57
32861994--32862032	7	5.6	7	100	0	78	69	0	0	30	0.89
32861983--32862037	21	2.7	21	78	15	71	63	0	0	36	0.95
32862112--32862159	20	2.5	20	82	3	53	43	0	2	54	1.12
32862133--32862202	30	2.2	32	85	5	90	41	0	2	55	1.14
32862177--32862257	15	4.9	17	73	22	66	43	0	1	55	1.07
32862113--32862270	47	3.3	47	70	21	121	40	0	1	57	1.10
32864249--32864471	79	2.8	78	82	9	265	24	27	22	25	2.00
32864249--32864471	39	5.7	40	86	8	266	24	27	22	25	2.00
32872241--32872463	79	2.8	78	83	7	272	24	27	22	25	2.00
32872241--32872463	39	5.7	40	87	6	280	24	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32877827--32877883	5	11.2	5	78	10	53	29	0	0	70	0.88
32877821--32877888	21	3.3	21	85	4	102	33	0	0	66	0.92
32877819--32877872	26	2.0	27	89	10	83	35	0	0	64	0.94
32878235--32878274	18	2.1	20	90	9	66	47	0	0	52	1.00
32882646--32882714	35	1.9	35	82	2	84	66	7	13	13	1.43
32883556--32883605	7	7.3	7	76	19	52	66	0	18	16	1.26
32883559--32883596	13	2.8	14	84	8	60	71	0	15	13	1.16
32892940--32893074	45	3.0	45	68	8	141	25	24	26	22	2.00
32892690--32893268	88	6.6	88	84	3	634	27	25	25	22	2.00
32893255--32894226	128	7.6	128	86	1	1209	31	19	23	24	1.98
32896116--32896155	18	2.1	20	90	9	66	47	0	0	52	1.00
32912855--32913117	40	6.6	39	86	4	278	25	27	21	25	1.99
32912855--32913117	120	2.2	119	82	4	307	25	27	21	25	1.99
32913049--32913126	40	1.9	41	82	10	97	26	28	20	24	1.99
32920805--32920985	40	4.6	40	81	6	190	26	27	21	24	1.99
32925556--32925590	18	1.9	18	88	11	54	28	2	8	60	1.41
32933493--32933542	3	17.3	3	79	8	50	28	0	4	68	1.08
32933786--32933831	22	2.1	21	84	4	56	30	0	10	58	1.32
32934185--32934216	16	1.9	17	93	6	57	50	0	18	31	1.48
32939266--32939291	12	2.2	12	100	0	52	15	0	15	69	1.20
32939668--32939708	17	2.4	17	80	19	50	51	4	7	36	1.51
32949376--32949478	23	4.5	22	73	7	80	20	15	21	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32949351--32949461	46	2.4	46	89	3	161	18	15	22	44	1.87
32949351--32949482	46	2.9	46	85	4	160	18	15	21	44	1.86
32952784--32952828	19	2.3	20	78	17	51	33	4	0	62	1.15
32954315--32954383	27	2.6	27	75	24	74	52	1	1	44	1.19
32954321--32954353	15	2.1	16	88	5	50	51	0	0	48	1.00
32955202--32955238	18	2.1	18	100	0	74	21	27	29	21	1.99
32958064--32958104	20	2.0	20	90	0	64	46	14	24	14	1.82
32964206--32964241	15	2.4	15	100	0	72	19	0	41	38	1.52
32964816--32964850	15	2.5	13	90	9	52	34	0	17	48	1.47
32970300--32970414	36	3.2	36	82	11	130	16	13	28	40	1.87
32976501--32976543	21	2.0	21	100	0	86	18	0	37	44	1.50
32982082--32982127	21	2.3	20	78	14	51	45	17	6	30	1.73
32988178--32988227	21	2.3	22	82	10	66	42	20	4	34	1.70
32991696--32991744	14	3.6	14	78	15	59	12	8	4	75	1.16
32992732--32992788	29	2.0	28	83	10	71	75	0	5	19	0.99
32992750--32992788	14	2.8	13	85	11	51	76	0	2	20	0.90
32992900--32992978	19	3.9	21	73	17	60	69	1	3	25	1.12
32992912--32992978	15	4.5	15	78	12	75	73	1	1	23	1.00
33001603--33001760	42	3.8	42	84	2	185	17	23	13	44	1.85
33001598--33001713	21	5.6	20	76	4	97	16	22	14	46	1.83
33001666--33001760	21	4.6	21	70	6	68	20	25	11	43	1.85
33001615--33001787	42	4.1	41	82	5	179	17	22	15	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33002571--33002633	29	2.2	29	100	0	126	19	25	33	22	1.97
33017972--33018118	21	7.1	21	66	3	91	16	20	16	46	1.83
33017955--33018124	41	4.1	42	85	2	218	14	21	16	47	1.82
33017955--33018124	83	2.0	83	84	2	216	14	21	16	47	1.82
33021462--33021529	25	2.7	25	75	4	66	25	33	19	22	1.97
33024549--33024592	18	2.4	19	81	14	56	75	2	2	20	1.03
33025963--33026017	26	2.2	25	84	12	69	74	3	0	21	0.97
33026249--33026301	18	2.9	18	74	2	52	24	5	0	69	1.09
33026331--33026367	19	1.9	19	94	0	65	32	5	0	62	1.18
33032609--33032656	25	1.9	25	87	8	71	54	18	4	22	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187