genome.fa.s15.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  91  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26604623--26604934	89	3.5	89	100	0	624	24	27	20	27	1.99
26605371--26606641	88	14.4	88	95	0	2121	21	24	26	27	1.99
26612812--26612930	58	2.1	58	93	1	204	58	5	5	30	1.43
26613218--26613260	6	6.7	7	94	5	58	74	0	0	25	0.82
26613714--26613802	19	4.7	19	91	0	151	38	14	8	38	1.78
26613714--26613802	38	2.3	38	98	0	169	38	14	8	38	1.78
26632697--26632743	24	1.9	24	86	4	67	40	0	34	25	1.56
26633844--26633903	20	3.0	20	90	0	84	36	30	13	20	1.90
26633917--26634315	27	15.1	27	80	5	386	43	21	15	18	1.87
26634037--26634316	155	1.8	156	87	5	424	43	21	15	19	1.88
26634118--26634259	74	1.9	74	79	0	158	43	23	13	19	1.86
26640134--26640535	27	14.6	27	82	4	390	43	19	17	19	1.88
26640169--26640248	36	2.2	36	90	0	124	48	23	13	13	1.79
26640142--26640261	63	1.9	63	84	3	161	47	21	15	15	1.82
26640769--26640823	26	2.1	26	93	0	92	20	20	23	36	1.95
26640933--26641041	28	3.9	28	89	4	166	24	25	22	26	2.00
26640928--26641042	56	2.1	56	93	0	194	24	24	22	28	1.99
26640944--26641058	28	4.1	28	86	3	81	27	24	20	26	1.99
26641486--26641535	22	2.3	22	83	10	59	40	4	14	42	1.64
26646068--26646104	7	5.3	7	100	0	74	0	29	29	40	1.57
26647646--26647685	18	2.2	18	95	0	71	17	10	27	45	1.80
26650612--26650911	165	1.8	166	84	5	410	42	12	13	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26676075--26676237	27	6.0	27	84	5	204	36	20	16	25	1.94
26682369--26682450	27	3.0	27	84	8	96	39	19	14	26	1.90
26682549--26682621	27	2.8	27	82	12	82	15	21	24	38	1.92
26685795--26685826	6	5.5	6	92	7	57	84	0	15	0	0.63
26696246--26696369	60	2.1	60	80	1	133	24	14	24	37	1.93
26708910--26708986	40	1.9	40	94	0	136	33	16	3	45	1.66
26711326--26711437	50	2.3	50	83	7	131	33	19	27	18	1.96
26712426--26712468	21	2.0	21	90	0	68	34	32	9	23	1.87
26713545--26713585	15	2.6	16	84	3	57	26	7	2	63	1.33
26716295--26716638	27	12.7	27	87	4	421	40	19	17	22	1.91
26718358--26718428	24	2.9	25	75	10	76	33	36	12	16	1.87
26721009--26721066	28	2.1	27	85	14	91	27	20	27	24	1.99
26720977--26721066	30	3.0	30	88	4	121	27	21	25	25	1.99
26721174--26721234	26	2.3	26	85	0	77	39	21	22	16	1.92
26721174--26721266	26	3.5	26	79	1	69	38	20	22	18	1.93
26721390--26721584	27	7.3	26	77	8	158	18	15	19	45	1.85
26721407--26721584	53	3.3	53	83	3	196	18	15	19	46	1.85
26721420--26721584	54	3.1	53	83	4	197	18	16	18	46	1.85
26724067--26724339	136	2.0	136	83	4	345	31	13	11	43	1.79
26724208--26724521	164	1.9	165	82	4	393	34	12	12	41	1.80
26731505--26731681	42	4.2	43	81	3	198	27	31	18	22	1.97
26731686--26731728	13	2.9	14	83	16	52	55	4	0	39	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26735212--26736309	149	7.4	149	97	0	1948	31	16	16	35	1.91
26736610--26736643	18	1.9	18	88	5	52	44	8	0	47	1.34
26736745--26736815	14	4.9	14	77	14	65	35	42	0	22	1.54
26736760--26736808	7	6.9	7	76	4	53	32	46	0	20	1.51
26736771--26736832	22	2.9	22	80	2	63	38	43	0	17	1.49
26736846--26736875	15	2.0	15	93	0	51	36	43	0	20	1.52
26737074--26737128	15	3.7	15	76	11	60	34	47	0	18	1.49
26737074--26737107	8	4.6	7	86	13	50	32	50	0	17	1.47
26737123--26737171	14	3.4	14	83	5	62	34	38	0	26	1.57
26737325--26737477	73	2.1	73	87	0	216	26	25	20	27	1.99
26737377--26737817	114	3.9	114	86	2	593	28	25	19	25	1.99
26737721--26737888	72	2.3	71	87	2	228	26	23	22	27	1.99
26739938--26740007	20	3.5	20	80	0	86	7	25	25	41	1.81
26740770--26740833	30	2.1	30	88	0	92	29	35	18	15	1.92
26741918--26742044	27	4.7	27	85	6	179	35	13	17	33	1.89
26741918--26742044	54	2.4	54	88	9	197	35	13	17	33	1.89
26751147--26751432	50	5.6	50	83	3	223	24	30	19	25	1.98
26751147--26751442	100	2.9	99	82	7	299	24	29	19	26	1.98
26757971--26758211	50	4.9	49	81	1	239	23	27	20	27	1.99
26761557--26761605	25	2.0	25	83	0	62	34	12	18	34	1.88
26769402--26769498	43	2.2	44	96	1	178	31	14	16	37	1.89
26775308--26775377	25	2.8	25	88	0	113	30	21	24	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26786498--26786571	25	3.0	25	74	7	69	25	17	20	36	1.94
26792145--26792230	21	4.0	21	80	8	86	38	20	22	18	1.94
26792432--26792520	36	2.4	37	81	5	101	31	23	1	43	1.61
26799754--26799862	23	5.0	23	83	8	147	37	22	22	17	1.94
26800079--26800115	16	2.3	17	81	13	51	48	0	0	51	1.00
26800285--26800346	16	4.2	16	76	19	80	29	17	6	46	1.73
26800295--26800349	27	2.0	27	96	0	101	32	14	7	45	1.72
26801355--26801392	18	2.1	19	85	14	53	0	21	0	78	0.74
26801354--26801394	13	3.2	13	90	10	66	0	24	0	75	0.80
26806405--26806574	83	2.0	83	93	4	290	35	12	10	42	1.76
26809095--26809365	100	2.7	100	90	2	411	25	18	22	33	1.96
26809095--26809365	50	5.4	50	74	3	249	25	18	22	33	1.96
26813897--26813939	20	2.2	20	100	0	86	34	9	4	51	1.55
26815896--26815963	31	2.2	31	81	2	84	36	8	10	44	1.70
26817184--26817225	17	2.6	16	78	14	50	64	2	0	33	1.07
26817796--26817856	11	5.6	10	87	12	77	21	29	0	49	1.50
26822482--26822772	126	2.3	126	91	0	483	26	21	19	31	1.98
26822847--26823090	95	2.5	95	79	7	278	42	17	2	37	1.64
26824189--26824255	9	6.9	9	71	15	53	56	1	2	38	1.24
26824189--26824255	30	2.3	30	87	7	93	56	1	2	38	1.24
26824192--26824271	30	2.6	31	81	11	87	57	1	3	37	1.25
26824980--26825022	21	2.0	21	82	8	52	46	2	2	48	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26825048--26825093	20	2.3	21	82	14	62	36	0	2	60	1.09
26825419--26825463	18	2.3	18	85	11	54	35	2	2	60	1.22
26826436--26826482	16	3.0	16	78	12	53	51	2	0	46	1.13
26827525--26827753	76	3.0	76	100	0	458	19	22	10	47	1.79
26834072--26834190	62	1.9	62	82	3	150	25	25	26	23	2.00
26834092--26834234	62	2.3	62	79	2	144	27	24	23	25	2.00
26834157--26834280	62	2.0	63	82	1	151	29	23	23	23	1.99
26835298--26835373	38	2.0	38	100	0	152	42	0	15	42	1.47
26838067--26838101	16	2.1	17	89	5	54	37	0	51	11	1.38
26841669--26841693	13	1.9	13	100	0	50	20	8	40	32	1.81
26842371--26842403	15	2.3	15	89	5	50	54	0	18	27	1.44
26843830--26843901	22	3.2	22	66	11	65	43	4	8	44	1.53
26843828--26843963	45	3.1	45	83	8	181	46	5	5	43	1.48
26843830--26843976	42	3.4	42	86	4	179	47	5	4	42	1.47
26843964--26844009	16	3.1	15	82	14	51	52	10	6	30	1.62
26843973--26844009	16	2.3	16	90	0	56	48	10	8	32	1.67
26847729--26847792	16	3.8	18	86	12	91	54	9	0	35	1.33
26847723--26847792	25	2.8	25	91	4	106	54	8	1	35	1.40
26847729--26847792	9	7.6	9	87	8	91	54	9	0	35	1.33
26847854--26847894	16	2.6	16	88	0	55	41	9	2	46	1.50
26849769--26849963	62	3.1	62	78	5	164	25	21	27	25	1.99
26852117--26852150	17	2.0	17	88	11	52	26	0	2	70	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26859975--26860045	36	2.0	36	97	2	135	54	2	16	25	1.56
26860034--26860105	34	2.1	34	89	2	110	45	6	16	30	1.74
26860175--26860246	29	2.4	29	81	4	81	48	15	12	23	1.79
26863964--26864009	18	2.5	19	82	10	60	28	15	30	26	1.96
26863977--26864015	18	2.2	18	85	0	51	28	15	33	23	1.95
26864155--26864201	15	3.2	15	77	17	62	34	0	4	61	1.15
26864417--26864473	22	2.7	21	81	7	62	71	5	5	17	1.23
26866016--26866068	28	1.9	28	84	3	72	41	13	11	33	1.80
26872195--26872249	24	2.3	24	81	9	60	34	1	1	61	1.17
26874905--26874939	14	2.5	14	90	0	52	34	17	5	42	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187